| mature miRNA: TGGCTTGCAGCAGCAACGGGC species: Zingiber officinale database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|87095725|gb|DY362509.1|DY362509 ZO__Ed0009A12.f ZO__Ed Zingiber officinale cDNA clone ZO__Ed0009A12 5', mRNA sequence TGGCTTGCAGCAGCAACGGGC EST sequence (targeted fragment marked with yellow): GGATGGCACAGGCGGTGGTGTTGCTAGATGTGTGGGTGAGTCCGTTCGGGCAGCGGTGCCGAATCGCGCTTGCGGAGAAGGGGGTGGCGTACGAGTACAAGGAGGAGGACTGGGCCAACAAGAGCCCGCTGCTGCTGCAATCCAACCCCGTCCACAAGAAGGTCCCCATCCTCATCCACGACGGCAAGCCGGTGTGCGAGTCCCTCATCATTGTGCAGTACATCTACGAGGTGTGGTCCGACGGCGCACCGCTTCTACCGGCGGACCCATACGCCCGCGCCCAGGCGCGCTTCTGGGGCGATTTCGTTGACAAAAAGATCTACGAGTGCGGAACCAGACTGTGGAAGCTGAAGGGAGAGGCCCAACAGGAGGCCAAGAAAGAGTTCATCGAGATCCTGAAGCTCCTGGAGGCTGAGCTGGGCGACAAGAAGTACTTCGGTGGCGACGCCTTCGGCTACGTCGACATTGCGCTGGTCCCCTTCTGCGCCTGGTTCTACGCCTACGAGACCTGCGCTGGTTTCAGCGTCGAGGCGGAGGTGCCGAAGTTGGTGGCGTGGGGCAGGCGGTGCATGGAGAGGGAGAGCGTCGCCNAGACGCTCTACGACCCGCTCAAGGTCTACGAGTTCGTATGCCAGTTGAAGAAGAAGTTCGGAGTCGAGTAGTCTTCCATGGAATCCATCTGGAGTCAGCGTTTC | |||||||||
gi|87112260|gb|DY379044.1|DY379044 ZO__Eg0005N07.r ZO__Eg Zingiber officinale cDNA clone ZO__Eg0005N07 3', mRNA sequence TGGCTTGCAGCAGCAACGGGC EST sequence (targeted fragment marked with yellow): TACTGGATGTGTGGGTGAGTCCTTTCGGGCAGCGTTGCCGGATCGCGCTGGCGGAGAAGGGGGTGGCGTACGAGTACAAGGAGGAGGACTTGAGCAACAAGAGCCCGATGCTGCTGCAAGCCAACCCCGTACACAAGAAGATCCCCGTCCTCATCCACGACGGCAAGCCGGTGTGCGAGTCCCTCGTCATCGTGCAGTACATCGACGAGGTGTGGTCCGATGGCGCACCGATTCTGCCGGCGGACCCCTACGCCCGCGCCCAGGCGCGCTTCTGGGGCGACTTCGTTGACAAAAAGATCTACGAGTGCGGAACCAGACTGTGGAAGCTGAAGGGAGAGGCCCTTCAGGAGGCCAAGAAAGAGTTCATCGAGATCCTGAAGGTCCTAGAGGCTGAGCTGGGCGACAGGAAGTACTTCGGCGGCGACGCTTTCGGCTACGTCGACATTGCGCTGGTCCCCTTCTTCGCCTGGTTCTACACCTACGAGACTTGCGGTGGTTTCAGCGTCGAGGCGGAGGCGCCGAAGTTGGTGGCGTGGGGCAAGCGGTGCATGGAGAGGGAGAGTGTTTCCCAGACGCTCTACGACCCGCTGAAGGTCTACGAGTTCGTAGGCTTCTTGAAGAAGAAGTACGGAGTCGAGTAGACGACTCAATGGAATCCATCTGGAGTCAGTGTTTCTGGACGCGTGTCCTTTATCTTAGTCGTAATGGTCAACGTACGCCATGGTTTGTGTCGCGTGTTGTGTGGCTACTTCGTTGTAGTCGCACTGGCTGTGTTTGTGGTCCGAGGAATAAAATCGACGTTCGCTCAGAGGGCAAAAAAA | |||||||||
gi|87091099|gb|DY357886.1|DY357886 ZO__Ed0002E24.r ZO__Ed Zingiber officinale cDNA clone ZO__Ed0002E24 3', mRNA sequence TGGCTTGCAGCAGCAACGGGC EST sequence (targeted fragment marked with yellow): GGAGGAGGAGTGGGCCAACAAGAGCCCGGTGCTGCTGCAATCCAACTCCGTCCACAAGAAGGTCCCCATCCTCATCCACGACGGCAAGCCGGTGTGCGAGTCCCTCCTCATTGTGCAGTACATCTACGAGGTGTGGTCCGACGGCGCACCGCTTCTACCGGCGGACCCATACGCCCGCGCCCAGGCGCGCTTCTGGGGCGATTTCGTTGACAAAAAGATCTACGAGTGCGGAACCAGCCTGTGGAAGCTGAAGGGAGAGGCCCAACAGGAGGCCAAGAAAGAGTTCATCGAGATCCTGAAGCTCCTGGAGGCTGAGCTGGGCGACAAGAAGTACTTCGGTGGCGACGCCTTCGGCTACGTCGACATTGCGCTGGTCCCCTTCTGCGCCTGGTTGTACGCCTACGAGACCTGCGCTGGTTTCAGCGTCGAGGCGGAGGTGCCGAAGTTGGTGGCGTGGGGCAGGCGGTGCATGGAGAGGGAGAGCGTCGCCAAGACGCTCTACGACCCGCTCAAGGTCTACGAGTTCGTATGCCAGTTGAAGAAGAAGTTCGGAGTCGAGTAGTCTTCCATGGAATCCATCTGGAGTCAGCGTTTCTGGACTTGTTTTTTGGTTGTGGACAACCTCGTCAGTGGTTACTTGGTACGTGTCTTGTGTTGTGTGGCTACTCCGTTGTCGGCGCACTGGCGTCAAAATTTATTTTAATGATTGTGGTTTACCTCGTCAGTAGTTACTTAGCTAGGTGCGTGTCTTGTGTTGTGTGGCTGCTTCGTGTAGCCGAACTTTTCAAAA | |||||||||
gi|87079798|gb|DY350115.1|DY350115 ZO__Ea0009P21.r ZO__Ea Zingiber officinale cDNA clone ZO__Ea0009P21 3', mRNA sequence TGGCTTGCAGCAGCAACGGGC EST sequence (targeted fragment marked with yellow): GAGAGGAGCGACCAAGGCAGAGGCGGTGGTGTTACTGGATCTGTGGGTGAGTCCTTTCGGGCAGCGGTGCCGGATCGCGCTGGCGGAGAAAGGGGTGGCGTACGAGTACAAGGAGCAGGACTTGGACAACAAGAGCCCGTTGCTGCTGCAAGCCAACCCCGTCCACAAGAAGATCCCCGTCCTCATCCACGACGGCAAGCCGGTGTGCGAGTCGCTCATCATCGTGCAGTACATCGACGAGGTGTGGTCCGATGGCGCACCGCTTCTGCCGGCGGACCCCTACGCCCGCGCCCAGGCGCGCTTCTGGGGCGACTTCATTGACAAAAAGATTTACGAGTACGGAACCAGGCTGTGGAAGCTGAAGGGAGAGGCCCATCAGGAGGCCAAGAAAGAGTTCATCGAGATCCTGAAGGTCCTGGAGGCTGAGCTGGGCGACAAGAAGTACTTCGGCGGCGACGCTTTCGGCTACGTCGACATTGCGCTGGTTCCCTTCTGCGCCTGGTTCTACACCTTCGAGACCTGCGGTGGTTTCAGCGTCGAGGCGGAGGCACCGAAGTTGGTGGCGTGGGGCAAACGGTGCTTGGAGAGGGAGAGTGTCTCCAAGGCGTTCTACGACCCGGTCAAGGTTTACGAGACCTTGAAGCAGGCGTACGGATTCGAGTAGTCTCAATGGAATCCTTCTTGAGTCAACGTTTCTGGACTCTTTTCCGTTATTTTTTTTCGATATTGTCAGCGTAGTCAATAGTTTGTTGGTACGTGTCGTATGCTGTGTGGCTACTTCGTTGGAGTCGCACTGGCTGTGTTCGTGGTTGGAGGAGTCAATAAAAAGACTTAT | |||||||||