| mature miRNA: TGTACTCCCGCCGTTCCTAAA species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|60275828|gb|DN180571.1|DN180571 HO26L23S HO Hordeum vulgare cDNA clone HO26L23 5-PRIME, mRNA sequence TGTACTCCCGCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): GCACGAGGCGACGTCGAGCTCGGCTGCCGGTGCGCCACCGCGGGGATCGACGAGGCCGTCCTGACCGCGTACCCGACGATGCTATACTCCTCGCCGGCACGTGCAGACGACGACGATGTTCTTCAGCCTGCCGCCGCGCCTTCGACCGGCGACAGCGATCCAGCGCTGGACGACACGACGTGCGTGGTGTGCCTAGCGGAGTACGCGGACGGCGACGAGCTCCGGCGGCTGCCGGGGTGCCGGCACGCGTTCCACCGACAGTGCGTCGACGAGTGGCTGCGCCAGCGGCCCAGCTGCCCGCTCTGCCGCACATCGCCGCAGTCCACCGCGGCGAAGAATTCCTGTACCGCCGGCCATGGCGTCAGTGTGCAGCCAAGGGATGAAGAGAGCTAGCAGAGTAGTACTCCTACATACCTTTTTTTTTTAATTTAGTAGGAGTACTACATAGGTACCTACTACTCCCTCCGTTCCTAAATACAAGTCTTTAAAGAGATTTCATTAGTAGACTACATACGGATGTATATAGACATTTTTTAGAGTGTAGGTTCACTCATTTTACTTCGTATGTAGACTCTTAGTGAAATATTTTAAAAGACTTATATTTAGGAACGGCGGGAGTACATCGTTGTGGCCATGTTACCGTTCATGTCTCACTGTTGTAATCTCCCCTTTGTTT | |||||||||
gi|13087466|gb|BG299737.1|BG299737 HVSMEa0021J19f Hordeum vulgare seedling shoot EST library HVcDNA0001 (Cold stress) Hordeum vu TGTACTCCCGCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): TCAAGAAGCACAAATGGCAGTTCTTGGTCTATCTACTGCCTTCTCTCCCCCAAGAGGTTCTTGGATAGCTGTGAGGCTCACGAATGGCGCCGCCGGGCGGAGTATCGGGGGCCTGTCCCTTAGGAGGTCCGCCGCCGCCGCCGTCGTCGTCCGCGCGGAGGTGAGCTTCGTGGACGGCGACGAATCGAAGCGGCTGGTGGCGGAGGAGGGGTACACGGCGCTGGACGTTCGGGACCGGCGGCAGTACAAGAGGGCGCACGTCAGGGCCTCCGCCCACGTCCCGCTCTACATCGAGAACGAGGACAACGACATTGGAACGATCATCTAGCGGCAAGCGCACAACAACTTCGTCGGACTGTTGTACAGCCTGTGCTTCACCAAGCTGAACCGGGACTTCACCAAGACGGTGAGGAGCAAGTTCTCGCCGGAGAGCAAGCTGCTGGTCGTCTGCCACGAAGGCCTCAGGTCCACAGCGGCTGCAGATGCATTGGAGCGAGAGGGCTTTCAGAACCTGGCCTGCATCACCTCCGGTCTTCACACATTGAAACCAGGAACGTTCGAGACCGTCG | |||||||||
gi|16290329|gb|BI949239.1|BI949239 HVSMEl0012P01f Hordeum vulgare spike EST library HVcDNA0012 (Fusarium infected) Hordeum vulga TGTACTCCCGCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): GCCACAGGGCGGAGGAGAGCCGGACCAAGCTAGAAAGAATAATATGGCGTCCAAGTCCAGCATCACCCCCCTCCTCTTGGCCGCAGTCCTGGCCTCCGTCTTTGCCGCCGCCGCAGCCACAGGTCAATATTGCTACGCGGGGATGGGTCTTCCGAGCAATCCGCTTGAGGGGTGGCGGGAGTATGTCGCACAACAGACCTGCGGCGTCAGCATCGCCGGGTCGCCGGTATCCACTGAGCCAGGTGACACCCCAAAGGATCGGTGCTGCCAGGAGCTTGACGAGGCTCCGCAGCACTGCCGCTGCGAGGCGGTGCGCTACTTCATAGGGCGGAGGTCTCACCCCGATTGGAGCGTGCTCAAGGACCTTCCCGGATGCCCCAAGGAGCCCCATAGGGACTTCGACAAGGTGCTTGGTACTCCGGGGCAATGCAACCTTCTGACCCGTGACCACGCCCCATACTGGCTCGGGGGGGACAGATGGAGATAGATCCGTCGTGTAGGAATGAATGACGCGCCTGGGCGGGACCCGGAGGAGTGGGTGCCCACAGTTAGTTGCCTATGCGAGCGTCGGTTGGCTCCCGTTCGCGTAACGTGGTGCGAAGGCTGTCGCGGCGGGGCCGGCGCGTTGAGCCGTCGGAAGGAGTCATAGAACGTCTCGCGGGGGCGTTATCTACTGGTGGCGAGGTTTTGCGCGTGTTGGAAGTCGTGCTGGCGGAGAGGACGCGAGGCGTCGGAGGCGGGGGCGCGGTGCGGTCAGGGGGAGGGCAGCAGTAGGATTCGGAGGGGAGTGGGGGGTCGTGGCGGTTGAAGGAGGTGTGAGCGGGGCGGACGATGCGGGGGAGAGAGGGCTG | |||||||||
gi|16320767|gb|BE194289.3|BE194289 HVSMEh0085A10f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vu TGTACTCCCGCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): ATGACCGGCGGGAACAGCGCGCTGAAGCAGCTGGACGAGGCGGCCAAGGCGCTGGCGTTCCCCCAGCAGTGAGGGAGCTGGCGGACAAAGTCATCCGCGCGCAGACGGAGGCCGTGTTCCACGACGGCCCGCAGCAGCAGCGCCGCGCCTTCTTCGACATGTGAGCGGCGACGATCTCGACTCGAATGTGGGCATGCATGCAATTCGTGGAGCTGCTTGCATGCATGCATGAGTGATGAGTGTAGATGTGTGGCGGGAATAAAAAGCTAGTAGTACGTACGCGCGGCACGGTGCTGCCTGGCTACAGGAGTACGTGCGTGTAGCAAAAGAGAGGTTTGTATGTCTCATGTATGTGCATGCTTGTGTTTAAACGTGCGCGGTTGTGTACGTACACGTGCATGTACGGGAGTTTTCTATGTATGCAAGTTTTCTATGTATGTAAATGTACCGGAGGTTTTTCGGGAATTATAAACGTGATTTTGGCCCCTCTGCTTGGTTTGGAGAAAAAGAAGATTAAAAACCTCGAGGGGGGGGCCCCGGGACCCCAATTTTGCCCTTTAAGAGAGGCGGGATTACAAATTTACTGGGGCGCTATTTTTTAAACGTACTAGAATGGGGAAAAACCTGTGGAGAACCCAAACTAAATTGCCTTTGAAGTACAACTACCATTTTGTACACTGAGCGTGTATGTCCAATAAGAGCTGGAACGATATTGCTTTTCAAATAAATAGGATCTCCCTTGATTGGGGGAAGGCGGTACATAGTAGCGGGTAGTAATATTGTTTAAACTACGATGTAGAGTTTTTCGTGGTAAGTAGGTCCCTAGTTTGTTACACAGTGAGCAGGTGAAGTTGGTACGATCGTTTTTATGTATAGAATGAAGGACG | |||||||||
gi|11891850|gb|BF627692.1|BF627692 HVSMEb0005I18f Hordeum vulgare seedling shoot EST library HVcDNA0002 (Dehydration stress) Hor TGTACTCCCGCCGTTCCTAAA EST sequence (targeted fragment marked with yellow): CACCAGCTGAGGCGCCTGGCTCTCGCTTCCACCTCCCCTCTTGCCGCCACCGTTGCTCGGCCTAAGGCTCCCGCTTCCCTCACGCGCTGTCGTTCACGCCGCTTCCAGCGCATCTCCTGCCAGGCGACCACCAACCGCTCCGGCGGCGGCAATGCGTCGAATACGTCGCCGGCGCCACCGAGGTGGCGCGTAACGGACTCTGCAGCCCTCGCGGCTGCCGTAAGCAAAACAATACCTGCCGACGCATATCTAAACAAGTTCGAGGCGTATCACAGTGGCTAGCACAGCATGACCTTTTCCATTCCTAGTTGCAGTGCGGACCTAGGGGACGCTGTCGTGGCGGACGAGACTGTCAGCCGGGTGTAGCGGCGGGCCATCTCGGCGTTGTTCGGTTGCAGGGAATGGGATCGGGGGAAGGGCCGTCGGGGGGGAGCGCGTGTGGAACTTCGGCCGGGGATGGGGTTCGACGGGTTGCGTGAAATAAGGAGCGGTGACTTTTATTCTACACTTAGTACGACAGAACCGTCGCGCGGCGGTTAGGGAGAGAGGGGGGGTAAGAAGTGTTTCCGCGCGACGCGTGGTGTAGCGCGTTGTGCGTAAATGCTCCGGTTACGCGCCCCACAGAAGATATTTGAGATACGGGTTGTGGGGGCCGGATAGTGCGGGCGCGAGGGGTTGAGGAGTCTTAGTAACGGCGGGAGTTCGCCGTATTTTCGGAATACAATATNTTTTCACGGGAGGTTGTAACGGGGGTTTTCACAAGTAGCGAG | |||||||||