| mature miRNA: TGTACTCCCTCCGTTCCTTAA species: Hordeum vulgare subsp. spontaneum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|21158426|gb|BJ479954.1|BJ479954 BJ479954 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): AGGGGAGCTCTCGTTGCCTGATCGCTGACCCATCGTCCAATTGACCGCAGCGGCAGTTCCACACCGTCAAGGTGCTGCCAGCCACCGCCGTTTTATTGCCTTTGATTCGGCTGTGCGCGTGGGCTGGGAACCGTGCTCTGTTGTCTGATGCGTCGTTGGAGCGGGAGGTTTGGTCGGTCGAGGCCAGGTATGAGCAGCTCCTGAGCTGGCTGGATGGATGGATGCAGGTCATGTGTCGTGAACCAACACCAGGACACCTCTTTTGGAACGGAGGGAGTATATTTTGGAACGGAGGGAGTATGTATGTACGTATGGATATCATGGTCATGTTGCTTGGGGGTTCAACCTCTTTTTTGGATAAAGAAGAGGGGCGATGCCCATAATTATGACTGGCTGAAATAATCATGTCTTTGAGACATCAAGACAGCCGTGGCAAGGTGGGACTAAATAGTGTCTGAAAGTGGGTATCTGCGTTGGAGTTG | |||||||||
gi|21160752|gb|BJ482291.1|BJ482291 BJ482291 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): CCCTCCGTTCCTAAATATAAGTCTTTTTAGGAGGTTCCACTAGNATATATATATAGACATACTTTACAGTGTAGATTCATTCATTTTGCTTCGTATGTACTCCCTCTGTTCCTAAATATAAGTCCTTTAAAGATTCCACCAGGGNACTACATACGGAGCAAAATGAGTCAATCTACACTCTAAAGTATATCTTTGTACATCCGTATGTAGTTTGTAGTGTAATGTCTAAAAAGACATATATTTAGGAACGGAGGGAGTAGTATTTAGGAACGGAGGGAGTAGTTGCTAAAGGTCGTTTGCTATTTATAAGAGTTTTGCAGGTGGGCGCCTGTCAGACCGCTGTTAAAATCTAAAATGTGGAATTTTGTGATACCTTGCCTCCCTGAATGTGGAATTTTGTGAAACTATGTCTTAGTGTGGAGTTATGTGATAACTTATACAACAAATGTAGAGTTTTGTGAAATTGTACACCTTATAGTGTGGTACAAATTCAAAATTAGCAGCATTCTTTATTTGATTGTGCCAGCATCTCATCTCCGTACTGCCTAAAACATGTTTGTTTTGTCTTGATGCTTTAAGGGTCATGCTTGCAACCTCCATATTCTGCACATGCACTT | |||||||||
gi|21157806|gb|BJ479328.1|BJ479328 BJ479328 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): TTCGGCACGAGGCTCTTCGGNGGCGCCGCTTTCCTGGCCCTTGATGCTGCTCTGTTCTGGCTTGTTTGCCAGATGCTGGCCCTCAATGCAAGGGCTGACTATCTGGATGAGGATGAGGATGACAAGGGCGAATATGGCCAGGTTTATGCTGCTGATGCCGATGGCACAAAGGTGTGAGTCAGTTACCTGCCAGAAAGTTAGCACCGTTTAGTTATATATATATTCCCTCCGATCACAAATATTAGATGTTTTGGATATTTTAATATGAACTACATACGGACTGAAATGAGTGAACAAACACACTAAAATGCGTCTATATACATTCAAATCAGAAAGCTGGAACATCTTATAATAGTGAACGGAGGGAGTATATTTTAGATACATCATGTCTTTGAGAAGGTCTGTGTTTAGTTCTCCAAAAATTGTAGATATGTCGTGTCATTCGCATAGTCGTTCATAAGGTCATTTGGTCATTCCAGTTTCAGACTTGAGATTGAACAATAAACATATTCTGGTTTGGTTCTTCCCTTGGTGAAATTATCATGTTATCTGTGAATGTTTAAAAAAAAAA | |||||||||
gi|14527897|gb|AV835808.1|AV835808 AV835808 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): TTCAATAGCAGNNTCAAATTAGNATGGTCATGTACATATTACATGGTACTCCCTCCGTCTTAAAATAATTGTCTCAACTTTGTACTAGCTTTAGTATAAAATTGTACTAAGGTTAAGACACTTATTTTGGGACGGAGGGAGTACATATAAGGCTCAACCAGNATTAATTTAGGGGAGGGGGGAGAGGACTGTACAATTTCTGACAAAATTGGAGATGAACATATCTCCTGATCACAAACTCACCCTGACGTCCGTCAGAAAGATGAAAACCTCAATGCTGGTAAGGCCTCAAAGTTTCTCTAGTTCACGTTCCATCGAAGCGAAGTCAAAACCTTCCCAATCAAGTCCTACATCCAACTCAAACATTGGCAACGGTAGATGGCTGATGTCTGCCAGCCCGATGTAGTCGTCGCCAGGCGGTTTGCCTGTTGTGTCAACGAAGTCATTGACATGAAACATATCTGCCAGCCTTGAAATATCATCCAGTGAGAGTTTGTCAGTTGTGCAAACATAGTCACTGATAGGAAGCTCATTTATCTGGCTGTGGAATGCATCCACTGGAATTTCTTCATCGCTAGGTGTCGATGAGCAGTGCACTAAGCTTTCATCAACATTCATCCGGCCAAGGAATGCATCTACCTCAATTTCTTTACCTGGCAGTTCTGGTGAGCAATGCAGTAAGCTCTCATCAGCAGTGTCAGGGTCTATCTCCATTGGCGCTACCTTG | |||||||||
gi|21158426|gb|BJ479954.1|BJ479954 BJ479954 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): AGGGGAGCTCTCGTTGCCTGATCGCTGACCCATCGTCCAATTGACCGCAGCGGCAGTTCCACACCGTCAAGGTGCTGCCAGCCACCGCCGTTTTATTGCCTTTGATTCGGCTGTGCGCGTGGGCTGGGAACCGTGCTCTGTTGTCTGATGCGTCGTTGGAGCGGGAGGTTTGGTCGGTCGAGGCCAGGTATGAGCAGCTCCTGAGCTGGCTGGATGGATGGATGCAGGTCATGTGTCGTGAACCAACACCAGGACACCTCTTTTGGAACGGAGGGAGTATATTTTGGAACGGAGGGAGTATGTATGTACGTATGGATATCATGGTCATGTTGCTTGGGGGTTCAACCTCTTTTTTGGATAAAGAAGAGGGGCGATGCCCATAATTATGACTGGCTGAAATAATCATGTCTTTGAGACATCAAGACAGCCGTGGCAAGGTGGGACTAAATAGTGTCTGAAAGTGGGTATCTGCGTTGGAGTTG | |||||||||
gi|21164539|gb|BJ486097.1|BJ486097 BJ486097 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): GAGAATATTGGTTCAGAGATTAAGAACATCAAAGAATTGGTCTGGGGACTGGATGAGAAGATGGATTCAATGGAAGCCAAACAGAATTTTTCATGCGCTGGTGTGATGTACCTCTGCCAATTCATAGAGCAAAGTGGTGGGAAGCTCCCTGAACGCCTGGAAGGCATCAAACCATCAGCGAAGCGATTTTCAACAATTGGCATACAGGGGTTGCAACTAGCCATAGAAACAGGGGATTATCGTGAATTCAGCAATGCTGATTCCACTGACAAGATAAGCAGGTCGAACTCGTTGAAGTCTGCCAACTAATTTTCTTTGGGGTTGGCGAGACGAATATCCAGATTTGTTGCTCAGTGGAACATTGTAAAGGGAGATCCTTGCTGGTTAAAATGTGAAGTGTCCCAGCCTTTTTGTTATTTGCTTGCAGGAAGTGCTGTTTTTTAAACTTGAAAACGTGTGCCAAGTGCTCCCCCCGTCCTGTAATATAAGAGAGCTTCTGACACTAACGCTCTTATTTTATGGGACTTTTATGGGACGGAGGGAGTAGTATCTACTAGGGAATCTAGACCAGAGAGTATTCTGGCATCACTTGTGCCTTGCATTTTTAGGCAATACCTAGCTATAAATAAATGTAACACTTGAGATTCGTTGAACCATTTCATTTATGGGTCTGTAAATCTTGCTGTTTGTGCATTCTGTTTTGAGGATTGCTTCATACAATAAAATGCTGTCGTGTCCCACNT | |||||||||
gi|18241224|gb|AV945427.1|AV945427 AV945427 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): AAGCTGCAGTTCAGGTGGGCGCTTNTGCTCTCCCTCCACACGCCCTACATCCACGTACACTCTTCTATCGGTACCTACACATACATGCGCCAGGTGGCTGGATCTCGCAGGGGCGATGTTTTTACTCACATCTCATGATGCATGTCAAGCTATTTGGAGCTTGCTTGCATCATTAAATGAGCATGCACTAATTGGACACAAATAAAGGAGATGAGTACTAAATGAACTTGTACTAAACAGAAACAATTTATTTATGGTGTACTCCCTCCGTCCCAAAATAATTGTCTCAAGCTAAGTACAACTTTATACTAGAGGTAATACAAAGTTGAGACATTTATTTTGGGACGGAGGGAGTACATAATTATCAAGTTGAAAGCTGATCTATAAATAGCAAGTATTGTCGTGTGTAAACCTTTTACTTGGTTCGTCTTTTACAGGAGCTCCATGGCTAAGAAAGTTAAAAGTGCGAAAGTGTGAACCCGTGAAACCCTACTCAGCAAAGAGTTGTTTGTTCTATTTGAGTGTAACGGATAGTAAATATTGTAAGTTGGCATATCTGGGGTTGGGGTTGTAATAGACATCAACAATGAATAGACNATTTAGT | |||||||||
gi|21161408|gb|BJ482953.1|BJ482953 BJ482953 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): TATGTTAAGGAACGGAGGGAGTACATAGCAATGCATATACTCTTAATGTGTTGACGAAGTCAATTTTTAGTACTGTATCTTAGGGTTTTGTATGGTTTATAGAGGTCAGCATGTTTGGCAGTTGATGTTCTGAGTTTACAGTAATCATGTGGTAGCATCTTAGCTTGTAACCAGTTTGTAGGACTTCTTCATATTTGGACTCTTATGCATTTTTTTTTTAACTTTACAACTCTTAACATCCTTGTGCAATAGAAGGTGTGGTAGGTGTTTTCAATTGCAGACTGAATTATGCCAGCTCCAAGGCCTGCTGCCCTGTAGATGCAATCATGCGAATGCTGCCCTGTAGATGTGATCATGTGAATGCTCGACTTATGATCATGTGGTGATGGCGGCCCTATGAAAAATCCTACGTTCCATGATTTATGTTTTCATCAGAAGTGTAATGTATGATAGCTTTGTAGTAGTAATACTCGTTTCGTACACAATTGAAAACTCGGGAAAGAATTTGCACCACCCAATTAGTTATTGCTTGCCAAGTCAGCGACTCTTGATTGTACTATGGGCTACTTTGCTCATTGACGAGTATTGTTGCTCGTTTGTATGTAGGACCT | |||||||||
gi|14528005|gb|AV835916.1|AV835916 AV835916 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): ATTTAGGAACGGAGGGAGTACATCCGTATGTGGTTCATAGTACAATCTCTTAAAAGACATATATTTAGAAACGGAGGAAGTAAGAAATAAGAACTCTGAAAGGTAAAGCTTGCTTCTGGTTGTAAGTTCATCTACAAACAATGGGCGGAAGTAAAATCACAGTTCATCATAGATGGGAGGAGCATTTGTTGGGGCAGGCCCCTATTGCACTTTACCCAAGATATCTNCAGCTGATACTGAGCCTGATCCTGATAGCAT | |||||||||
gi|18242751|gb|AV946954.1|AV946954 AV946954 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): GGAGGAACTCAGATCCAAGTGTTGAGAACCAGGACGAGGTATATCTCCCGGAGTGGATCTACGAGAAAGTAATCAGCGGGCATGATTGGGAGCTTACTTTGGAAATGACAGCAGAAGACAAGGAAAAGATGAGGCAGCTGACTATTGTGGGGCTGTGGTCCATCCAGTGGAACCCAAAGAACCGGCCATCAATGACAAAGGTGGTAAACATGTTAACTGGGAGGTTGCAGAACCTGCAGATTCCCCCCAAGCCCTTTGTGTCGTCTGACAATCGCCCAATGCCCCAAAACACGACCAACACATGAATATGCACAGTTTTTTCGTGTATTATTATTACATACACGTATGAGGGAACTTAACCCACATGTGAAATGCCCTGTCACCTGATCTGTACCTTTACTATATTGTAAAATTCTCCCCAACTATAAGTATTTAGGTACAGAGGGAGTACATGGGTCGCCGGATCTGTACCTTATCATGTTTGTAATACTATNATTACTAGAAGCATA | |||||||||
gi|14526867|gb|AV834778.1|AV834778 AV834778 K. Sato unpublished cDNA library: Hordeum vulgare subsp. spontaneum top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): GCGACAAGTAATTCCAGACGGAGGGAGTATTTAGGAACGGAGGGAGTAGATTGTACGAATATTTCATATCGCTCATTGATTTGAAATCTTCGTACTTCTAATGCTGGAAATATCATGGGAGAGTATCACGGCTTCACACTAGTTATCAGTTNCACTATCTAAATCAACATGGAAAGGCCCATCAATATTCCTTGTCATACCATGATTGCTAGATNGTNTCATGGAAAAGGATTTCATATTAGCATATCGCTCATTGATTTGAAATCTTCGNACTTCTAATGCTGGAAATTTCATG | |||||||||
gi|21163029|gb|BJ484583.1|BJ484583 BJ484583 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): TACACCAAAGCCGGCTCAGTGGCATCGCATAGCTGTTCATAGCGAGCATCTAGGTGCTTATGCTGTTCAGAAGTTGGTGAAAAACTCTGCGGTATATATTGAGGGTGATATCGAAACCAGGATCTACAATGATGGAATTGATGGTCAAGTCAGGAATATACCGGAGATCTGTATTCGGGGTGATGGTAAGATTCGTCTGGTTAAATCTGGGGAGAGTGCTGCTAACATATCACTAGATGAGCTGAGAGACGGATTGTTCTAGTTAAAGCTATCGATGTCAGCACAAGCAGGTCATAACTCGTAACTAGCGGCGGGTTAAGTCGAGAATAAGGCGCTGCTTTGTTGAAGCCTTGAAGCATGACATGGATATTTGTTGCTCCTTCCGTCCCATAATAAACACTCTTATATTATGGGGCGGAGGGAATACATCTCAATCTTGGCAGAAGCAGTTAAATTTACCAGTGGATGCATGTAAGCCTTCCTGGAACCCGCTCGTGTGTTTTACCATGTTGCGGATGCTGATGGACGAACTGTTTTACGACGGTTGACGATGACATGATGTGCTGAAGATTGTTCAAGATAAGGCAGGTAGAACAGCGTAGGCGGCACAGAAGGCC | |||||||||
gi|21161007|gb|BJ482549.1|BJ482549 BJ482549 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): ATCTAGGCATGTGATCTGCAGGTACTCCCTCCGTCCCATAATATAAGGCGTTATTACATCCAATATACTCACATATTATGGGACGGAGGGAGTATCTAGTTGCTTCCTTTTGAATTAAAACTTTTTAACAACTAGAGCCGCTCTCTTCATCTCCTGAATACTCTTATGGGTGCATCATACCTGAAACCTCTCGTCTTTCAGGTTTTCCAGTTGCAAGTCGATAATGGTATCCCGATAAAGAGCTGGTTTGATGACCCCGCGGACCAGGAATTGGTTGAGTTACTCCCGTTCCTCGAGACCCTTGTTGATGCAGAGGACGTAAGGCCACTAATCTCAAAGACTTTTCACGGCACAATCCAGCAGGATTAGACTTAAGATGCATCCTTATCATGCACTGAGCCTGAGCTTGCCAGTTCCAGCGAGCTCCATCTTGGGAAATTAGGTATTAGGATCAGCATTCACCATTTATGTTATGTTGGCTGTTACAAATAGCAAGCATAAACTGCATGTCGCCATGGCTTGTATATGTAGTATTGTTCGGTTTTCTGTGTCGCAGGTCTTTGTACATAAACTATAGTAT | |||||||||
gi|21163811|gb|BJ485369.1|BJ485369 BJ485369 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TGTACTCCCTCCGTTCCTTAA EST sequence (targeted fragment marked with yellow): TATTATGTACAAACTGCTCCCTCCGTTCCTAAATATACGAGTATATGCATATACATATATGAAAGAACCCAGGTATCTTTCGAATATATAAGAGTATATGCATACGATCGATCCCAGATATGTTAAGGAACCCAGATATGAACCCAGGTATGTTAAGGAACGGAGGGAGTACATAGCAATGCATATACTCTTAATGTGTTGACGAAGTCAATTTTTAGTACTGTATCTTAGGGTTTTGTATGGTTTATANAGGTCAGCATGTTTGGCAGTTGATGTTCTGAGTTTACAGTAATCATGTGGTAGCATCTTAGCTTGTAACCAGTTTGTAGGACTTCTTCATATTTGGACTCTTATGCATTTTTTTTTTAACTTTACAACTCTTAACATCCTTGTGCAATAGAAGGTGTGGTAGGTGTTTTCAATTGCAGACTGAATTATGCCAGCTCCAAGGCCTGCTGCCCTGTAGATGCAATCATGCGAATGCTGCCCTGTAGATGTGATCATGTGAATGCTCGACTTATGATCATGTGGTGATGGCGGCCCTATGAAAAATCCTACGTTCCATGATTTATGTTTTCATCAGAAGTGTAATGTATGATAGCCTTGTAGTAGTAATACNCGTTCGTACACAATGAAAACNCGGGAAAGANTTGCACCACCC | |||||||||