| mature miRNA: TGTGGGAGAGTTGGGCAAGAAT species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109852501|gb|DW481480.1|DW481480 GH_RMIRS_031_A11_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TGTGGGAGAGTTGGGCAAGAAT EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAACCGACAAATATATTTACAAGTATCCCCAACCTTAAACCCAATGTCATTAACACAAATAATTAAAAGGAAGAACAATTAAAAACATTATACCATCTACATTAAATTCCTAAAATGCCACCACCACCAACCGCCATTACAGCACAGCTTCAGCTTTACCTTCTTCACCACCTCCTGCATGATTCATCCCATAACCTAACAACGTTGCCGTTTAACGCCGTCAAATCCTGATAACGGTACCACCCTGCTTCCCCTTTCCTCAACCTCAACACTCTTTCCCAACTCTCCCACCACTCCCCGCAGCACCTCCCTTCACCACCGTCACTCCATTCCGTTACCGTCATCCCACCGTCGACGTCTACGTCATCATCCACGTAATAAACAGTCAACTTGATTTTTCCTCCTTTGGTCACCAACTGCGAACCGCTTGTTTCTGAGACGGAAGCTGGAGGGGCCGGGGGAGTTGAAACTGAAGCTGAAGGGGTCGGCTTTTCATCGGCGCCGAGAATCGGTCGAGACTCATCATGGGCACGATCAGAAATAGACACCGAGAGCTTCTGGTCATTACTTTGAACGGAGGCGCCGACGACGGCTCTTATCCTCCAAAAACTAACCGCAGCAGTGAGAACAGCAATCCACGTCCACAGATTATGAATAACCGTGAAAATCCCAAAACTCACATAGTTAAATGCCAAAGCTTCGAGTGGAGATTCCAACACCTGATTCATTTTTGTTTGGTCCGCCAACTCTAAAATTCGGCTGTCTGA | |||||||||
gi|164289498|gb|EV497230.1|EV497230 sg111D10 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TGTGGGAGAGTTGGGCAAGAAT EST sequence (targeted fragment marked with yellow): ATCCCTTTCCACAAGTAAAAGAGAAGCTGAGGCTTGCAAAACTCAGTTATGATGGCTTTGATTAGCTCACTTGTTAGGGTCCCTTTGCTCCTTCTTCCCCTGCTGCTGCTGCTACTCTTCAAGCAGAAGACCCATCAAGTTAAGAAAGAACAAAATTACAAGCTTCCTCCGAGTCCTCCCAGGCTACCAATTATAGGTAACCTGCACCAGCTTGGTGAATTGCCACACAGTACTCTTTCCCAACTTTCTCACAAATATGGTCCAGTCATGCTCCTTCATCTGGGTCGTATACCGGTGCTTATTGTCTCATCAGTCCGATGTCGGCGAAGGAAGTCTTAAAGGTCAATGATCTTCGCTTGTATGCAGACAGGTCCTCGGACTGGTCTGACTGCTTGGTGAAGACTCTTCGTTAACAGATATATGTTACGCACGATAGCCGATTTGACGACCCATGACCAGGTGCATATTATCTGGGAGCAGAAACCTGGCGGGAAAGAATCATGC | |||||||||
gi|164301251|gb|ES798923.1|ES798923 UFL_504_24 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGTGGGAGAGTTGGGCAAGAAT EST sequence (targeted fragment marked with yellow): GGCACGAGGCGCTACCCTCATCAGTTCATATATACATATATCATATAAAGTGTAGACGTGGCTATTGCAATTTGTGGTATAGGGACAATGAATCTTGGGTGGTGGTGGATGCTTCTAGCAGGTGCCTTAGCTGGATTTCTCTTCTTTCATGGCTTAGCAGACACCGAAACAGCTCCCAACTACTCTTTCATGTGCGATGCAACATCAGCTTCAACATTATCATATTACGACTACATCATTGGCGGTGGTGGCACCGCCGGATGTCTCTTAGCTGCCACATCATCTCAAAACGCCAACGTCTTGCTCCTTGAACGTGCTGGCTCCCCTTATGGTAACCCCAACATAACTAAACATGCCCAGCATAGGTGCTGCCCTCTCTGACCTATCCCATCCATCCCCATCACAGTGGCTTCATCTCCCAAGATCGGCCTACTCATGCACGTGCACCGTTGTTGGGTGAGCCAAGTTGCTCCCATTCATGATTCCACACACCGCTCCCACCATGAATATATCCCCCCCACACCCACACCCCCAGCGCACAACACTCACTATGTGGTGCTTCTCACCATCCACCTGCAGAATACTTAACCAACTCTCCCACACACAACCTCACCACGTGGGGCTATACCCCCAAACGCTATCGGCTCCAATCACCCACCGACAACCTCCACCCCTCGTGACCCTCCAATCCCATCCTCTCACCCTCACCCCACCTAACACAACTCCCAACCATTCCAATACACCTCACCGACCAGCCCCCACTCAAATCCCACACTCTGCTCAACCATATCCTATCTCCAGGTATTCTCTATCA | |||||||||
gi|164336467|gb|ES814102.1|ES814102 UFL_341_93 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGTGGGAGAGTTGGGCAAGAAT EST sequence (targeted fragment marked with yellow): TCCAAAGATTTCTTTTTAGACATAAATTCGGCATCAAAGCTAGAAACCGAAAGTATTTCCACATTTCATGGACAGCCATACATACCATATTAAAGCATGAACATCAACTACAAAATATCTACCCTGTGGCCAGTTCCTTAGTTCCTATTTACCTGGCCATGTGTACCACAAAAACCACCTTCATACAAAATGCCTGCTGTCTTCCATTTGTTTCCTAAAGTTTACTCAAAAAGACCCATAAAATCCTGCCAGCAACAGCAACCCTATCAATCATCAAAACGGACCCCATTTCTTCTCTGCAACTTCCAAAATACTAACACAGATTAGCTTCTCTTCTTCCTCATCATCACCATCCTTTCCCACTTGGAGCAACTCGTCAACATCATTAACTCCAGCATGATTCTCTCTTGAAGGACCAGAAGCCGTACTATGATGGACCGGTTCTTGCTCAACTCTTTCACCATCGCAAACGCTCCCCTTCACTAATGAAGGCAAATTGGTTTCCTTAATCTCCGCTTCCTCATCACCCTTCACCCTCGGATTGGCCCATGAAGGCAGTACACGTTTCCCCAAATTCCTTCCTTCATGGCTGCTAACCCTAACCCTAACGCTTCCTTCCCCAACTTCAAAATTAGATCCATGATTTTGCAGATTTTGAATCTCTGTTTCCGGCGCACCTTCAGGAGATGCATCAGAGTTCTTGAACCACTCCAGCAATTCCTCGGTGTCGGTGTCGCTCATAGCCGGAGATTCAATAGTCTTTGCTTTCAATCTTTTCGAAACTCCATTCTCTTCTTCTTCCATAACCCTCTTACTCTTCCTGCCGCTATTCACCACAGCTTCACAATCAACGATCACGGGATCATCGTTTGTTGTTGCAATATCAAAGGAGGCGTTAGTCAACCTGAACTCAAGAGGGGTGGGGGAAAACTTCTTCATCTTCCGAAATGTCTAAAGCAGGTAAAAATCACGACGTTCCGGGAAATTAACCTGAATTTTGAAAGGGGGCGTCGGAACCCCGAGTCCGAAGTCCGCCCCGTGCCCAATTCAGACCCAAGGGGAACCACCTTAAATAAAAATTGAAATGTACAAAAACCAAAAAAATGGACCAGGGGGGATTGGGACCCCCCGTACCTTGGGGTTTCCCGAAATGCCTAATGAGTGCCTTTTTGTCACGGGGGCAACCTTTTTTTAACCGGGGAAATTGTTTTCTAAAAAAATTTTTTAAATTTTTTCCCAAAAAAAAAAAAAAAGGGGAAAAAAAGCCCGAAGGAAAGAAAAAAAAAACCCCTTTTTAATCACAACTATAAAGGAGGGTGTTTTTTT | |||||||||
gi|109883865|gb|DW512835.1|DW512835 GH_TMIRS_167_B05_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TGTGGGAGAGTTGGGCAAGAAT EST sequence (targeted fragment marked with yellow): AAAACCGAAAGTATTTCCACATTTCATGGACAGCCATACATACCATATTAAAGCATGAGCATCAACTACAAAATATCTACCCTGGGGCCAGTTCCTTAGTTCCTATTTACCTGGGCATGTGTACCACAAAAACCACCTTCATACAAAATGCCTGCTGTCTTCCATTTGTTTCCTAAAGTTTACTCAAAAAGACCCATAAAATCCTGCCAGCAACAGCAACCCTATCAATCATCAAAACGGACCCCATTTCTTCTCTGCGACTTCCAAAATACTAACACAGATTAGCTTCTCTTCTTCCTCATCATCACCATCCTTTCCCACTTGGAGCAACTCGTCAACATCATTAACTCCAGCATGATTCTCTCTTGAAGGACCAGAAGCCGTACTAGGATGGACCGGTTCTTGCTCAACTCTTTCACCATCGCAAACGCTCCCCTTCACTAATGAAGGCAAATTGGTTTCCTTAATCTCCGCTTCCTCATCACCCTTCACCCTCGGATTGGCCCATGAAGGCAGTACACGTTTCCCCAAATTCCTTCCTTCATGGCTGCTAAACCTAACCCTAACGCTTCCTTCCCCAATTTCAAAATTAAA | |||||||||
gi|109891136|gb|DW520099.1|DW520099 GH_TMIRS_237_E06_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TGTGGGAGAGTTGGGCAAGAAT EST sequence (targeted fragment marked with yellow): GCTAACGTAAATGGTCCCTCATATCAACCTCTTTAATATTATCATGAATTCACATTCTCAGTTCTTCAAATGAAAGGGAGAAACTAAGAGGGGAGGAATAGCAAAGAAAGGCAAAAACGCCATATCGAGTTTTTGTCAATTGGTTTAAAACAAGATGACGATGACCAAGTGGTTCATAGAAACTAAATGAACTAAGCATTAATTCCATCTTGGCTCAATCAGCAGAAACATAAGAAGGTTCTTCCTTTTATACAAAGAAGCATCAGCTGCTCCCATTTTCGGTGTAAAAGTTGCCACAGTGTGCCCTTAGAGATCAAACTACACCAATCCCTCACTCAGGTCATCAAAGGATACATTGTTAACACCTGTACCGGGCTTTATAACACGAATTCTTCCATCGCGACGGATGCATATTTCTGGTACATGTTTAACTTCACCATTTATGCTGTCATTGTAAACTCTAGTTTCAATGTCACCCTCAACAAAGACTTGAGAGTTTTTTGTGACTTGTTGAACCGCATATGCCCCAAGTATATCATTATGCACAGCAATTCGATGCCATTGGACAGGTTTTGGTGTGTTCTGGTCCCGTACAACTCTCAGGTCAAACATACCACCTGTTCCAACAGTAAATATAGTTACAGTTCTCCCATTTCGCAATATCTTCTGCACGGGGGCTTGCCCAACTTTTCCACAAATAATTGCCTTGTGTACACCACGGAAATTCCAACCCTTTCCGGGTCTGACACCTTGGAGCAGTGGCTCACGCCTGTTAGGCTTGTCGCCAAGAATCTCATCTATCTCTTCGCTTTTCGCTTCCTCAGTTTCGAAGTCATCAAGCGAACCTGTTGAATACCACATCTT | |||||||||