| mature miRNA: TGTGGTCCATTCTAGTCACCAT species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73878454|gb|DT481192.1|DT481192 WS02531.BR_C18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_C18 5', mRNA sequence TGTGGTCCATTCTAGTCACCAT EST sequence (targeted fragment marked with yellow): GCATCCAAGAGGGTGGCTAGAATGGAACACAACATTTGCACTCGACACATTATACTATGGTGAATACATGAATTACGGACCCGGTGGGGCGGTCGGGCAAAGGGTTAAATGGCCTGGGTACCGGGTCGTTACATCGACCATCGAGCTTTTCAAGATCATGGAGTTTTCTACAGGCCTTTATTTTCTCTCTTCTAGGGCATAATTTCTGAAGGCATGAATGGAAATACGTGGACAAGATAATGAATGATTTATTATTTGACCCTTCGACAATGGTTTCTTGTGCCTGGTGGGTTGGTGGCAGTGCCTTTACTCTTTTTACCACTTGGGAGGACGTGAGGCTAGGATCTATATATTGAATCTACTGGTGGCGCCGTGGCGGTGACAAATATGAATGCGCAAACCTACTCACATTATTGTTGCCTTCTGGTCATCAAGACTAAGCCCGAGTACGACGAGGCACAAAGGTTCCAACCCAAAACCTGCCCTACCACCGACACCACTGGGGTCTGGGTGGTGGACTGGTGCATGATCATCATCCTGGTGGGTTCAAAAATCAGGTGACTCATTAACACTGTCCTTGACAAGTTGAGCTTGCGAGATGGCCCATTTCCTTTGTTTTTTTATTTCTTTTGTTTGCCTTTCCTGTCTTGGCTCTTAAGAGAGATACCATCCTGTTGTTCTTGCTTTTCTTCGTGACACTATTTGGATTTTGTGACCCGACTAACGCACTAAATAGGAGAAAACTCTACAGGCATAGAACAACTATGAAACTGTTCTGATAAAAAAAAAAAAAAAAACT | |||||||||
gi|73883765|gb|DT486503.1|DT486503 WS02531.B21_C18 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02531_C18 3', mRNA sequence TGTGGTCCATTCTAGTCACCAT EST sequence (targeted fragment marked with yellow): GCATCCAAGAGGGTGGCTAGAATGGAACACAACATTTGCACTCGACACATTATACTATGGTGAATACATGAATTACGGACCCGGTGGGGCGGTCGGGCAAAGGGTTAAATGGCCTGGGTACCGGGTCGTTACATCGACCATCGAGCTTTTCAAGATCATGGAGTTTTCTACAGGCCTTTATTTTCTCTCTTCTAGGGCATAATTTCTGAAGGCATGAATGGAAATACGTGGACAAGATAATGAATGATTTATTATTTGACCCTTCGACAATGGTTTCTTGTGCCTGGTGGGTTGGTGGCAGTGCCTTTACTCTTTTTACCACTTGGGAGGACGTGAGGCTAGGATCTATATATTGAATCTACTGGTGGCGCCGTGGCGGTGACAAATATGAATGCGCAAACCTACTCACATTATTGTTGCCTTCTGGTCATCAAGACTAAGCCCGAGTACGACGAGGCACAAAGGTTCCAACCCAAAACCTGCCCTACCACCGACACCACTGGGGTCTGGGTGGTGGACTGGTGCATGATCATCATCCTGGTGGGTTCAAAAATCAGGTGACTCATTAACACTGTCCTTGACAAGTTGAGCTTGCGAGATGGCCCATTTCCTTTGTTTTTTTATTTCTTTTGTTTGCCTTTCCTGTCTTGGCTCTTAAGAGAGATACCATCCTGTTGTTCTTGCTTTTCTTCGTGACACTATTTGGATTTTGTGACCCGACTAACGCACTAAATAGGAGAAAACTCTACAGGCATAGAACAACTATGAAACTGTTCTGATAAAAAAAAAAAAAAAAAA | |||||||||
gi|52392377|gb|CV234625.1|CV234625 WS01215.B21.1_J20 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01215_J20 3', mRNA sequence TGTGGTCCATTCTAGTCACCAT EST sequence (targeted fragment marked with yellow): ACAGGTGCAACATCATTGGCTACCAAGACACCCTTTATGTGCATTCAAATCGCCAATTCTTCAGGGAATGTGACATCTATGGAACTGTAGATTTCATATTTGGCAATGCTGCAGTTGTGTTTCAGAACTGTAGCATATACGCCAGGAAACCAATGGCCTTCCAAAAAAACACCATCACTGCCCAAAATCGCAAGGACCCTAATCAAAATACAGGCATATCAATCCACGCTTGCAGGATCCTTGCCACTTCAGACCTCACACCGTTGAAAGGCAGCTTCCCGACATTTCTCGGCCGTCCATGGAAGCTCTACTCTAGAACTGTGTACATGTTATCATACATAGGCGATCATGTTCATCCAAGAGGGTGGCTAGAATGGAACACAACATTTGCACTCGACACATTATACTATGGTGAATACATGAATTACGGACCCGGTGGGGCGGTCGGGCAAAGGGTTAAATGGCCTGGGTACCGGGTCGTTACATCGACCATCGAGGCAAGTAAATTCACCGTGGCACAGTTCATTTATGGATCATCTTGGTTGCCTTCTACCGGGGTGTCATTTTTAGCTGGTCTCTCACTTTAAATGACATTTCTGTATCATATATGCAAGTGTTTTTGAATTGCCATAAAATGGGTATAGGCTTTTCTACTCTAATTAATTGCAATTGTACGCCTGCAAGTGTTAGTTTCTCTGTTCGATTTTTTCTTCTTTTTTTCTCGTAGTGTAATAACCATTTCAACAGCCTATAATGTTCCTTCCTTTACAGTTGTAACTCGTTATTATAAGTGCTATATAGAAAGTCAATGATTAAATTGCTCAAAAAAAAAAAAAAAA | |||||||||