| mature miRNA: TGTGTTCTCAGGTCACCCCT species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110871558|gb|DY293533.1|DY293533 IC0AAA83AC11RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): AGGAACCACTCTGTTCTGGGATTCAAAAATCACTCACTCTTTTCAGCTCTCTATCTTCGATTTAAAAAGAAAAACCAGCAATACGGATCGTAGCCGAAAGACGAAATGACAAGTCGGTTCGGGTCCCAATCATCTGGAGTAACGACGATGAATGTGATCAACACACCATCCGCAGATCTTGCCCTCACCAATCTCGCCTACTGCTCGCCCGCGGATCTCCTAAACTTCCGCGTGCCGAACTCCAATCTCTTCCTTGCTTCCGTCGCCGGCGACTCCTTCGTTCTATCACTTGCTTCTCATCCAAGCGTAAATAAAGGCCAAATTGCTTTGAATTCTGTTCAGCGTCGACATGCTAAGGTTTCCACTGGCGATCATGTATCACTCAACAGATTTATTCCTCCAGAGGATTTTAACCTAGCATTGCTCACTGTTGAATTGGAGTTTGTGAAGAAAGGCTCTAAAAATGAACAGGTTGATGCTGTTCTTCTGGCTAACCAACTCCGAAAAAGATTTATTAATCAGGTTATGACAGCAGGGCAGAGGGTTGTATTCGAGTATCATGGAAATAATTATATATTTACAGTAAATGGAGCTGCAGTAGAGGGTCAAGAAAAATCTAATGCACTTGAAAGAGGGATTATTACTAATGAAACTTATTTTGTCTTTGAAGCAAGTAATGACAGTGGAATTAAGATTGTCAATCAGCGAGAAGGTGCCAACAGCAATATCTTTAGGCATAAGGAGTTTAATCTTCAGTCATTGGGTATAGGTGGTCTAAGTGCAGAGTTTGCTGATATCTTTCGAAGAGCTTTTGCATCTCGTGTTTTTCCTCCTCATGTGACCTCTAAATTGGGGGATAAGCATGTAAAGGGCATGCTACTTTATGGGCCTCCTGGTACTGGCAAGACTCTTATGGCTCGTCAAATTGGAAAAATGTTGAATGGAATGAAACAAAGATTGTAAATGGTCCTGAGGTTTGAACAAATTTGTGGGTGAACTGAGAAGACATTAGGGACCTGTTTGCTGATGCTGAAATGGATCAAGGACTTCTGGGGAACAAAGTGATTTGCCTGTTAATAATATTTGAAGAAATTGAATCCATTTTGCCAGTCCAAAGGATTAAATAAAAAACGGGAAAGGAAGTTCTTGAAAGCCTCCCGGAAACCATCTTCTTTAAAAAAAAAAAAAGGGGGGGGGAAAATCCTTAAAAATAAAGGTTTTTTGTGTGAATGGGG | |||||||||
gi|110846736|gb|DY271199.1|DY271199 KN0AAP9YD03FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): AAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAGAAATCTAAAACTTTGTTGTGTATGTTGAATGGTTTTCGT | |||||||||
gi|110851575|gb|DY271250.1|DY271250 KN0AAP9YF19FM1 Fruit-TF Citrus clementina cDNA 5', mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): ACACCCCCGGGTCCCCCCGTAACCAATGAAAACTATTTACTAAAAAAAAAAAAATAACTACAAAAAACAAAAAAAAATGACCAGAAAAAAGGGATTACCCCAACAAAACGTTTGAAGGGGATTTACAAAATTAACAGTAAAAAAATTACCCGCCAGGGACTTAAAAAATTTATACCCATCAGGGCGGGGAACCCCCGCCCACAAGCATGCATTAAAATCCCAAGGGAACAAAAACTGAGGGAGCAAGGTCTACCACTGACCATGCAAGGCCGGCATATTGAAGGAACCTAAGGCCGGGGTCAACATCAAAAATGTCCGGGCCGGAAAAAAAAAAAAATTTTTGGGCAAAACTTGATTGCTTAATCTTATCCGATTCCTTTCCCTTGACGGGGGCATTAAGCAGGGGGAAGTAGCCGGTTGACTTTATTGGGATGCCCAAGGGGTTTGAAATTACAGGAACAATCCATTTTGCAAAACCCTTGCCACAAAACTTCACAAAAAGTATTGTTGGCCTTCCCCCAAAAATTCTTCCTACAAAGGGAGGGATTGAAAGTTGTGGGCAAAAAAAGAGTGGACCCCCCTCAGGGGGGAACTGGGAATACGTAAGGGGGACCCCCCCCACCATTCCCAATGTGACCCCATTAAAGGGGGGATGGAAACCAAAGCTTGGAATCCGAAGCCCTGGGGTTGGAAAAACAAAAAAACAACAGGAACCTGAGGGCCAACCAAAAAAAAAAAAACTTGGGCCCCGGAAAAAAGAAATTGCCAAAAAATTCAAGAAAAGAAACCCAAAAGGAAGGGGCCCCCAACCCAAAACCCCCCCCGGCAAGGAATCAAACAAAAGGGGGCGGCACAAGGAAAATTCTCCCCAACACAAGGGGGCCCCAAACCAACAAAAAAAGGGCACCCCCCCCAAAAGGGGTACACGGGCAAATTTTTTTGG | |||||||||
gi|218827812|gb|FC873562.1|FC873562 KN0AAI3BG05FM1 AbsDev Citrus clementina cDNA clone KN0AAI3BG05, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CATTTTCCTGGTTCTTTGATGATGTGGGTATTCCACAAGATTACAGGCACATGGAAGGCTTCGGTGTTCAAACTTTTACACTGGTCAATAAGAATGGGAAAGTGCACTATGTGAAATTCCACTGGAAACCAACTTGTGGAGTTAAGTGTTTGATAGATGATGAAGAAGCAGTAAAGGTTGGTGGATCTAATCACAGCCACGCTACTCAGGATCTCTACGACTCAATTGCAGCTGGAAACTATCCTGAGTGGAAACTCTACATTCAGACTATTGATCCCGATCACGAGGACCAATTTGACTTTGACCCACTGGACGTAACCAAGTGGTGGCCTGAGGACATCATCCCTCTGCAGCCAGTTGGACGCTTGGTCTTGAACAAGAACATCGATAATTTCTTTGCGGAAAATGAAATGCTTGCATTTAACCCTGGTATCGTGGTTCCTGGGATCTACTACTCAAATGATAAGATGCTCCAATGTCGAATCTTTGCCTATGGTGATACCCAGAGGCATCGCCTTGGACCCAACTACTTGATGCTTCCAGTTAATGCACCCAAATGTCCTCATCGCAACAATCATTATGATGGTTTCATGAATTTCATGCACAGGGATGAGGAGGTCGATTACTTTCCTTCGAGGTATGATCCTACTCGTCATGCTGAGAGATATCCCATTCCTTCTGATGTAATTACAGGAAGGCGTGAGAAGGCTTGCATTGAGAAGGAAAACAACTTCAAGCAGCCTGGAGAGAGATACCGATCCTGGGCCCCAGACAGGCAAGAGAGGTTCCTTANTCGATGGA | |||||||||
gi|218784270|gb|FC868664.1|FC868664 C31003C03EF AbioticL1 Citrus clementina cDNA clone C31003C03, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): TTGCAGCTGGAAACATCCTGAGTGGAAACTCTACATTCAGACTATTGATCCCGATCACGAGGACCAATTTGTCTCTGACCCACTGACGTAACCAAGTGGTGGCCTGAGGACATCATCCCTCTGCAGCCAGTTGGACGCTTGGTCTTGAACAAGAACATCGATAATTTCTTTGCGGAAAATGAAATGCTTGCATTTAACCCTGGTATCGTGGTTCCTGGGATCTACTACTCAAATGATAAGATGCTCCAATGTCGAATCTTTGCCTATGGTGATACCCAGAGGCATCGCCTTGGACCCAACTACTTGATGCTTCCAGTTAATGCACCCAAATGTCCTCATCGCAACAATCATTATGATGGTTTCATGAATTTCATGCACAGGGATGAGGAGGTACTTAGTTTCTACTTTCCCCCCTGGAAACAAAATTTATGAATCAAAATAGGCTCGGCACCTATAATCTATCCACATTTATCTTAACTTAGATAATGGTGCATGTCTTAAAGATACAAGTGCTTAGTACAAGTGGATGGTATCAGAATCTAACCTGTTGTGTGCTAGTGTTATAAAAAAATGCTCTAATTGGATATTATGATGCTTTGTTTTAGGTCGATTACTTTCCTTCGAGGTATGATCCTACTCGTCATGCTGAGAGATATCCCATTCCTTCTGATGTAATTACAGGAAGGCGTGAGAAGGCTTGCAT | |||||||||
gi|218788641|gb|FC927527.1|FC927527 KN0AAP9YD03FM1 TF Citrus clementina cDNA clone KN0AAP9YD03, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): AAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTTNCAGACTATGATCTTGAATAAGAGAAATCTAAAACTTTGTTGTGTATGTTGAATGGTTTTCGTAAAAAAAAA | |||||||||
gi|218842639|gb|FC925704.1|FC925704 KN0AAP11YJ01FM1 TF Citrus clementina cDNA clone KN0AAP11YJ01, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): TCTTTCTCTCCACCTTCCCTCCTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCCTTCTGGACCAAATTCCATTATTGGAAGGGCTGTTGTAGTCCCACGCGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAG | |||||||||
gi|110883546|gb|DY300189.1|DY300189 IC0AAA9BG12RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CTCAACTCCACTTCTCCTTTCTTACGATAATAATAACAGTAGCAAAATCTTCAGCAAGAAATATCGCCATGGATCCCTACAAATTGCTTCCGTCAACTACTCACAATGCCCCCTTTATGACTACAAATGCCGGCGCTCCTGTCTGGAACGACAATCACTCCTTGACTGTTGGAAGTAGAGGTCCTGTCCTTCTTGAGGATTATCATCTGGTGGAGAAACTAGCTCATTTTGCCAGGGAGAGGATTCCAGAACGTGTCGTCCATGCTAGGGGAGCCAGTGCTAAGGGTTTCTTTGAGTGCACCCATGATATTTCTCACCTTACTTGTGCTGATCTTTTTCGAGCTCCAGGGGTTCAGACACCTGTCATTGTTCGCTTCTCCACTGTTATCCATGAGCGGGGCAGCCCTGAGACACTCAGGGATCCTCGAGGATTTGCAGTCAAGTTTTACACCAGAGAGGGTAATTGGGATCTTCTGGGTAACAGTATCCCTGTTTTTTTCATCCGTGATGCAATCAAATTCCCAGATGTGATCCATGCTTTTAAACCTAATCCAAAGTCTCACATCCAAGAGTACTGGAGGATCCTCGACTTCTGCTCCCACCTTCCTGAAAGCTTGTCCACATTTTCCTGGTTCTTTGATGATGTGGGTATTCCACAAGATTACAGGCACATGGAAGGCTTCGGTGTTCAAACTTTTACACTGGTCAATAAGAATGGGAAAGTGCACTATGTGAAATTCCACTGGAAACCAACTTGTGGAGTTAAGTGTTTGATAGATGATGAAGAAGCAGTAAAGGTTGGTGGATCTAATCACAGCCACGCTACTCAGGATCTCTACGACTCAATTGCAGCTGGAAACTATCCTGAGTGGAAACTCTACATTCAGACTATTGATCCCGATCACGAGGACCAATTTGACTTTGACCCACTGGACGTAACAAAGTGGTGGCCTGAGGACATCATCCCTCTGCAGCCAGTTTGACGCTTTGTTCTTGAACAAGAACATCGAATAATT | |||||||||
gi|218787832|gb|FC925396.1|FC925396 KN0AAP3YH10FM1 TF Citrus clementina cDNA clone KN0AAP3YH10, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CCTCTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTTACCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCCGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACTGGACCCCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAATAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATACATGCTTGAGTGTGACTTTTTGAGACTATGATCTTGAATAAAAAAAATCTAAAACTTTGTTGTGTAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|218816917|gb|FC927365.1|FC927365 KN0AAP7YP14FM1 TF Citrus clementina cDNA clone KN0AAP7YP14, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CTCTACAAGCCCTTTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTTTCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGAGACACAACAAATGGTTGCATGTCTACCGGACCCCACTTTAACCCTGCTGGAAAAGAACATGGACCTCCAGAGGATGAGAATCGTCATGCTGGTGACTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCCATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGCGGTCATGAGCTGAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCCTCCAAGGATGAAGCCGCATCTCATCGGACAATAATAAATTCATTTGATATGATGTTTTGAGTGCATTATAGTCCATATATGCTTGAGTGTGACTTTTCAAGACTATGATCTTGAATAAGAAAAAATCTAAAACTTTGTTTGTGTATGTTGAAATGGTTTCCGTATAATCTCCCTCTTTACTTTTTCATTTAAAAAAAAAA | |||||||||
gi|218823833|gb|FC931243.1|FC931243 C34103A10EF PostHarvP1 Citrus clementina cDNA clone C34103A10, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GATCGAAGACTTTGTAAGTGTTCGAGGAAGTCTTAGCTTTCTTTGGTATTTGTTGTGTGTGGAAGATCCAAGAGATATGGCGAGTTTTGCAGGGACAACACAGAAGTGTAAGGCGTGTGAGAAGACGGTATACTTGGTTGATCAACTTACTGCTGATAACAAAGTCTATCACAAGGCTTGTTTTAGATGCCACCATTGCAAGGGCACCCTCAAGCTGAGCAACTATTGCTCCTTTGAGGGAGTTTTATATTGCAAGCCTCACTTTGATCAGCTGTTTAAGATGACTGGCAGCTTGGATAAAAGTTTTGAAGGTACTCCAAAAACTGTTAGAGTTGAGAGATCTGCTGATCAGGTCACAAATAGCAGAGTTTCAAGTATGTTTGCTGGAACTCAAGATAAATGCGTTGCTTGCAAGAAGACTGTTTACCCAATTGAAAAGGTGGCAGTTGATGGTACATCATACCATAAAGCCTGTTTCAGGTGCACCCATGGAGGTTGTGTAATCAGCCCATCAAACTATGTGGCGCATGAGCATCGTCTCTACTGTAGGCATCACCACAATCAGCTTTTCACGCAGAAGGGTAACTTCAGCCAACTTGACAACCATGAACAAGTTGAAGCGGTGACTGAGAACGCAACAGCTTAGTGATACTGTGAAATTTTCTTCTGTTAATGTGACAATGTGTGATTGCTTCGGTTGTGA | |||||||||