| mature miRNA: TGTGTTCTCAGGTCACCCCT species: Cryptomeria japonica database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|190376617|gb|BY883191.1|BY883191 BY883191 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL015_I17 5', TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GGTGTTCTGGCGAAAGAGCGTTTTAAGCATATTGAAGTTGTTTTGTGAAGTGGGTTGACCTGGGAACATGGCTTTTCTAAGCACTCGGGCTATGCTGGTTTTGGGTGTATCAATGGCGGTCGCCCTCCACTGCGCTGCTGCGGCTACTTACACCGTGGGAGGCAGCACAGGGTGGGCTGTGCCCACTGCCAATACGCTATACACCAGCTGGGCTTCCAGTAACACCTTCAAAGTTGGAGATTCACTCGTGTTCAACTTCGCTACAAATGCCCATGATGTTCGTCAAGTGACTAAGACAAATTACGATAGCTGTAATTCAACTGGTGCCTTGCAAACCTATGCAACTGGACCTGCCACTGTTAATCTCACAGCAT | |||||||||
gi|190369676|gb|BY894597.1|BY894597 BY894597 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL046_N02 5', TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GAGGGGAACGCAATACGACATCACCAAAGCATTAAATGGTGGCCTGAGAAAACAGGTGGGTTCTATCCTCGATTGATTTATTTTTTTCAATTCTATGAGAAAATTGCATTTTTTTGTATGAAATTTTATCAGGAAGAATGCCAAGCGTTCTCAATGTTGAATCTATTATTAAGCGTGGTACCAGGACTGCGCTATCATCTCTTTTATCCATCTGCGGGATTGTCTATTAGCATTTTGAAATACGATGGCTTTGGGCCAAATTGGACATCCCTTCAATGTATGGTCACATGGAACGAACTATGGTATTTTCCCTTGCAATGCACATCATTGCTTTGCAGAAACTAATTTGAATGCTAGGGGTCGCTGTTTGAGCAAAACCCATATTATGGGCATCTCTGGAAAGGGTAGAAGGACAGGATTCAATAGGACCAAATGCTCGTCTTCAGAAAGCGCTCGTGCAGAGCCTTTAGAATCCAATGGAGTAGTTGAACTGCCTCTGTT | |||||||||
gi|190365384|gb|BY889681.1|BY889681 BY889681 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL033_G04 5', TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GGAAAATACACAAAATATCAAATTTCTTTTGCATAACAGAACCATTATTTAGATAGAGTTTTAATTGGGTTTAGAAGGTTAGATTGGGGATTTTACATCAGTATTATGTTTGACCAACTTTCTTTAGAGTTTATTTACATTAGAGATTTAGGCATTCTTGAAGGGTTTTATTGAGAGTATCAGTTTTTCATCTTTGGAGATTTATTTACTAGTTGTTTGGGGATTTTTTGAAGGAGCTGAAACATCACTTTCGGGCACTCTTCCAACAAATATCAAATCAGTAAGAAGGGACGAGCTGGGAACACAGTAAAGATTCAAAAGCCAAAAGATCGCACTGAAAGGGCCATGGCGATGAAGATGAAGGTGGCGCAACTGCATATTGTGCTATTATTGTGTGCCTTTTTGGGAGGCAGCAGGGCGAGAAATGTGACTGAGGACGAACTACTGCAGGTAGCCTCGTCTCTCAAGATGTTTGTGGACGAGCTTCCGGACATGCCCAGGCTCCAAGGATTCGTTCCCCAGGGCCAAGATTTCAAGCCTACGGAGCTTCGCATTGGCATGTTCGAGAAAAAATGGAAATTTCACAGAGACCTTCCG | |||||||||
gi|29055382|gb|BP173632.1|BP173632 BP173632 Cryptomeria japonica inner bark Cryptomeria japonica cDNA clone CC0020R 3', mRNA seq TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CNCANGTGNNNTACCATTCTCAACTCTTTAGGGAGAAAGGTAACTTCAGCCAGCTTGCAAAGGGTACACCCATAAGTACACCCGTAAAAGGGGTGACTGAGAACACAGCGGAGGAGTAGCCAGCAGAGCCTTTCTTTTGGCTGTATTTGTGTAATTTTTTCATTATTTTTTAATTTTGTAAGGAAGTGTGTACAATAGCCTGTGACTATTAAGTGTATTTTTTTTCTCACAGGTGTGGTGTGGGTGTTTAGTGAGTATTTGCAACTTGTTTTCTTTCTAGGGAATATGTTTGCTGGGAAAAGTTGAGAGCATAGGAATGTTTAATCAAGATGGTTTGTGTATGATTCATGAGTTAGTTTTTGAGGCTTGTAATTGTTTGTTATATTACTATATCCCTCTGAGACCTCGAGGCAGAGGATCTCTCGCTATAAAATAATGTNTAGCANCAC | |||||||||
gi|190385257|gb|BY895983.1|BY895983 BY895983 Cryptomeria japonica male strobilus Cryptomeria japonica cDNA clone CMFL050_L04 5', TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GCGGACCCGATTGCAGCGCTCCATGTGAATGGGGGAACTGGGAACACAATAAAAATCGCAACACCTTCTGTCGTATTTTTTTCGATTGATGTTTGGCTGTGGTTTTAGCTGCAGCAATGGGTTCTAAGGCCATGGAGAATGAGTTAGTGGAACTGTTCGAAAAGGCCAAGAAGGCCGCAGACAAGGCGGCCATAGATGAAGGCCCTGTGGAAGCCGAAGAGCAAAGATGTTTAGATGCCCTCACACTCCTAGCTTCTGTTCCTGTTACTATGGCTGTTCTCATCTCTTCTCAGGTTGGTAAGCGACTTCGAAATCTCACAAAGCATCCTCGGGAGAATATTCGTTCTGTTGCACAAGATATACTTGAAGATTGGAAGAAGGTTGTTACTTCAGAAACTATGGCAAACAATGGAAACAAAGCTTCAAAGTCTGAGAGGTCAGAGTCTATCAAGGTTGAGAAGAAACCAAAGATAGAATCAGAGTCTATCAAGGTTGAGAAAAAAGTAAAGTTAGAATCGGAGTCTATCAAGGTTGAGAAAAAAGTAAAGGTAGAATTGGAGTCTATCAAGGTTGAGAAGAAAGCAAAGGTAGAACCAGAGTTTGTCAAGGTTGAGAAAAAACTAAAGGTAGAGTCAGAATCTACTAGCATTAAGAAAGCATCTT | |||||||||
gi|11370712|gb|AU066363.1|AU066363 AU066363 Cryptomeria japonica inner bark Cryptomeria japonica cDNA clone CC0020, mRNA sequenc TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GTAAACACCACCATTCTCAACTCTTTAGGGANAAAGGTAACTTCAGCCAGCTTGCAAAGGGTACACCCATAAGTACACCCGTAAAAGGGGTGACTGANAACACAGCGGAGGAGTAGCCAGCANANCCTTTCTTTTGGCTGTATTTGTGTAATTTTTTCATTATTTTTTAATTTTGTAAGGAAGTGTGTACAATAGCCTGTGACTATTAAGTGTATTTTTTTTCTCACAGGTGTGGTGTGGGTGTTTANTGAGTATTTGCAACTTGTTTTCTTTCTAGGGAATATGTTTGCTGGGAAAAGTTGAAANCATAGGAATGTTTAATCAANATGGTTTGTGTATGATTCATGAATTANTTTTTGAAGCTTGTTAATTGTTTGTTATATTACTATATCCCNCTGAAACCTCNANGCAAAAGGATCTTC | |||||||||