| mature miRNA: TGTGTTCTCAGGTCACCCCT species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90498148|gb|DY960006.1|DY960006 CLSL2553.b1_A16.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSL2553, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CACACACTCTTACGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTT | |||||||||
gi|90522543|gb|DY984401.1|DY984401 CLSS754.b1_D22.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS754, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CACACACATACACACAAACAAGTGTTCTCCTTTTCTTGATTGATCACAGATTTCCGTTTGCTTTTTGGGTTGCTTGATTCGATCGCTGCTGGGTCTTGAAATCTGTTGAATCTTTGAAAGAAGGATCATCAAAAATGGCTTCCTATGGAGGGACAACTCAAAAGTGTAAGGCTTGTGAAAAGACTGTTTACTTGGTGGATGAACTCACTGTTGATAATAAAGTTTATCACAGGGCTTGTTTCAGATGTCACCATTGCAAAAGCACCCTCAAGTTAAGTAATTACTCTTTTGAAGGAGTATTATACTGTCAACCTCATTTTGATCAGCTCTTCAAGTTGACTGGCAGTTTGGATAAGAGTTTTGAAGGTACCCCCAAAACAGTTAGAATTGACAGATCTTCTGATCAGGGCCAATCTAACAGTAAAGTATCGAGTATGTTTGGTGGAACACAAGACAAATGTGTTTCTTGCAAGAAAACCGTCTACCCTATTGAAAAGGTGGGTGTTGATGGAAATGCATATCACAAGGCCTGTTTTAAGTGTAGCTATGGAGGGTGTCATATAAGTCCATCAAACTATGTGGCTCATGAGCATCAGCTTTATTGCAAGCATCATCATGCACAGCTTTTCATGGCGAAGGGAAATTTCAGTCAATTTGACAAGCAACATGAACCAAATCATGGAGTGCCCAATGGGGTGACTGAGAACACAACCGAAGTTTGATGATCTGAGATTAAATTCAAGATCGGGTTTCTGAATGTTAAGCTATATTTTGAGCAGAGTTTTTGCAAGTCTGTGTTTTTTCTTATGTTGTTCAAAGAAGATTATTTACAAGATTTGAACTTTTTTGAGTTNTGACTGCGTGTGTTGAGTGAATAACTTGTCATTACTGAATAAAGTTGGTGTGGG | |||||||||
gi|83981153|gb|DW127262.1|DW127262 CLSX3831.b1_N22.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX3831, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CGGGGGAATGATATAATAATAACCGTGCCCTATCTCGAGGTATCATCGACTAAAAACACACACTCTTACAGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAAATCCTCATGGAAAGGAACAT | |||||||||
gi|83996852|gb|DW142961.1|DW142961 CLSZ2220.b1_H04.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSZ2220, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GCGGGGATCTGACTAAAAACCACTCTTACAGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTTGAATATCTTTTGAGCCAAGTTTTGAATTTAGACTTGGTTTATA | |||||||||
gi|83983343|gb|DW129452.1|DW129452 CLSX6219.b1_E19.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX6219, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): ACACACTCTTACAGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTTGAATATCTTTTGAGCCAAGTTTTGAATTTAGACTTGGTTTATACT | |||||||||
gi|83981383|gb|DW127492.1|DW127492 CLSX4048.b1_O04.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX4048, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CGGGGACGCTAAAACACACACTCTTACAGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTTGA | |||||||||
gi|90522982|gb|DY984840.1|DY984840 CLSS8125.b1_I15.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSS8125, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GATATCGACTAAACACACACTCTTACAGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTTGAATATCTNTTGAGCCAAGTTTTGAATTTAGACTTGGTTTATACAGTTTCCCTTTTCCG | |||||||||
gi|90499672|gb|DY961530.1|DY961530 CLSM11876.b1_H18.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM11876, mRNA sequen TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GGGGATCATCGACTAAAAACACACACTCTTACGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACAAGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTA | |||||||||
gi|22264792|gb|BQ875571.1|BQ875571 QGI8H21.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI8H21, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): ATGCATGGTGAAACCATCAATTACTTTATGAATACCATATATCTCATGTGCATAAGCATTTGAAGTTACATACTTGGAACCCAAGAACCTCGATGTAGCATCAAGAAATGTCTTCAAAAAAGGCAATAAACTTTGTACATTTGTCACACCCCGAAAACCGAAGGCAGAAACATTTCCGGGGTTGACTCCACGTTGAGTATCAAATCCAATGAACATAGTAAGTAAAGTAAAACAACCATTACATTACATAAGGAAAAGTTTTACAATTGTTTCAAAACTACAGTTATACAGTTGTGATACATAGTATATAATAACAAAACGAGCGAATGTTCTGCGCACTCCATCCTGGAACAAAATGATCTTCGGGTACCTGTTCTAACGTTGACCTGAGAACACAAGCGGTTTTGAAAATCAGCATAACGCTGGTGAGTTCATAAACGGTTTTTGTTTTCTGAAAATGTTCAAGTTTCCTTTCTGTTTCTGAAAATGTTACACACACACCAAGAAAATCCCATATTTTCTTAAAAGGTTGGTTACTGTTTTTCAACATGTAAAGTAAGGTGAAGTTGTACACTGAAACACGTTTATTCATGTGAAATTGTATAGTTAGGTTATCTGGTTCATTATACTGTTCTGGTTATGTACCAATGTATTCCCAAAAAAGTCCCATACTTTCCTGATTGTGTGTTACCAATTGTAAAAGATGTAAAAGTATCTGGTTTGTTATACTTTTCTAGTCAC | |||||||||
gi|83982299|gb|DW128408.1|DW128408 CLSX525.b1_J11.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX525, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): ACTCTTACGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGCGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTTG | |||||||||