| mature miRNA: TGTGTTCTCAGGTCACCCCT species: Lactuca serriola database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|83902275|gb|DW104355.1|DW104355 CLRX2156.b1_G12.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX2156, mRNA sequ TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GTTTGGTGGACACAAGACAAATGTGTTTCTTGCGAGAAAACCGTCTACCCTATTGAAAAGGTGGGTGTTGATGGAAATGCATACCACAAGGTATGTTTCAAGTGTAGCTATGGAGGGTGTCATATAAGTCCATCAAACTACGTGGCTCATGAGCATCAGCTTTATTGCAAGCATCACCATGCACAGCTTTTCATGGCGAAGGGAAATTTCAGTCAATTTGACAAGCAACATGAACCAAATCATGGAGTGCCCAATGGGGTGACTGAGAACACAACCGAAGTTTGATGATCTGAGATTAAATTCAAGATCGGGTTTCTGAATGTTAAACTATATTTTGAGAAGAGTTTTTGCAGTCTGTGTTTTTTCTTATGTTGTTCAAAGAAGATTATTTACAAGATTTGAACTTTTTTGAGTTTTGACTGCGTGTGTTGAGTGAATAACTTGTCATTACTGAATAAAGTTGGTGTGGGGTTGTAAGGATGTGTGGTTCTTGTGATTATTTGAGGCTTTTGATTGGTTTTTNNNA | |||||||||
gi|22431385|gb|BQ996989.1|BQ996989 QGG14G05.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGG14G05, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): TCGGCCTTATGGCCGCTTGACGGGAGAGTGATAGGCTGTGAGGCTAGTGTGTCACACCCCAAAACCTGAACGGCAGAATCGTTTGGGGGTGGAGGACGTCATGTATAGTATCACAACAATGCAAAGTAGTGAACAAGCAACAACATCATCCATTGCATTAATAATATAATTTCATACAAGTGTGTTCTGTCAAGTTATATAGACACCAAAAAGTACATCAAAATAAAATAGGAGTCTTGAAGAAACTCCATCTTCTCAAAAATCTGGCACCGGTACCTGTCTACTGGCGACCTGAGAATACAAGTTATTTTGGAAGCGAGTATCAACTTTAAAGCTGGTGAGATCATAAGTATATTAGTGTCTGAGTTTGTATGAAAGCATTTGTAAGATGTAATGTATAAGTTTTGTAAAGTTTGTATTTGTTTGAACTATCCTAGAAAACCCTATGTTTCCTACTAAGATTAGCCTTCTACCAAGGCATCTAGTAACTGTGTATGTCTCTTGTAAGAGTGTGTATTTTCCCAAATTCGACTATCATTAACCAAAAATATAGTTTTTACATTACCGTGCATCGTGTGAATGTTCACGAAGTGAATGTAATAGGAAAAATATTATAGTACTGTAGTGTTGTATTAAGTAACTACTGCTGTACTAACTA | |||||||||
gi|83907343|gb|DW109423.1|DW109423 CLRX6581.b1_I13.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX6581, mRNA sequ TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GCGGGGATGACTAAAACACCACTCTTACAGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGTGATCTTGGGAATGTTGCAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTTG | |||||||||
gi|83906318|gb|DW108398.1|DW108398 CLRX5737.b1_B20.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX5737, mRNA sequ TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GCGGGGATATCGACTAAAACACCACTCTTACGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGTGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTTGAATATCTTTTGAGCCAAGTTTTGAATTTAGACTTGTTTT | |||||||||
gi|83919955|gb|DW122035.1|DW122035 CLRZ4153.b1_B08.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRZ4153, mRNA sequ TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): ACACTCTTACAGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGTGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTG | |||||||||
gi|22445947|gb|BU011552.1|BU011552 QGJ16I19.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGJ16I19, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): ATGCATGGTGAAACCATCAATTACTTTATGAATACCATATATCTCATGTGCATAAGCATTTGAAGTTACATACTTGGAACCCAAGAACCTCGATGTAGCATCAAGAAATGTCTTCAAAAAAGGCAATAAACTTTGTACATTTGTCACACCCCGAAAACCGAAGGCAGAAACATTTCCGGGGTTGACTCCACGTTGAGTATCAAATCCAATGAACATAGTAAGTAAAGTAAAACAACCATTACATTACATAAGGAAAAGTTTTACAATTGTTTCAAAACTACAGTTATACAGTTGTGATACATAGTATATAATAACAAAACGAGCGAATGTTCTGCGCACTCCATCCTGGAACAAAATGATCTTCGGGTACCTGTTCTAACGTTGACCTGAGAACACAAGCGGTTTTGAAAATCAGCATAACGCTGGTGAGTTCATAAGCGGTTTTTGTTTTCTGAAAATGTTCAAGTTTCCTTTCTGTTTCTGAAAATGTTACACACACACCAAGAAAATCCCATATTTTCTTAAAAGGTTGGTTACTGTTTTTCAACATGTAAAGTAAGGTGAAGTTGTACACTGAAACACGTTTATTCATGTGAAATTGTATAGTTAGGTTATCTGGTTCATTATACTGTTCTGGTTATGTACCAATGTATTCCCAAAAAAGTCCCATACTTTCCTGATTGTGTGTTACCAATTG | |||||||||
gi|83907641|gb|DW109721.1|DW109721 CLRX682.b2_D04.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX682, mRNA sequen TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): AACACACTCTTACGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGTGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTTGAATATCTTTTGAGCCAAGTTTTGAATC | |||||||||
gi|83907480|gb|DW109560.1|DW109560 CLRX6691.b1_F17.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX6691, mRNA sequ TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): AAAACACACACTCTTACAGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGTGATCTTGGGAATGTTGCAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTT | |||||||||
gi|83907642|gb|DW109722.1|DW109722 CLRX682.b3_D04.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX682, mRNA sequen TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CCACTCTTACGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGTGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTTGAATATCTTTTGAGCCAAGTT | |||||||||
gi|22443843|gb|BU009448.1|BU009448 QGJ10H24.yg.ab1 QG_EFGHJ lettuce serriola Lactuca serriola cDNA clone QGJ10H24, mRNA sequence TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GGTATCATCGACTAAAAACACACACTCTTACAGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGACACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGTGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTT | |||||||||
gi|83907640|gb|DW109720.1|DW109720 CLRX682.b1_D04.ab1 CLR(XYZ) lettuce serriola Lactuca serriola cDNA clone CLRX682, mRNA sequen TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CGGGGATCACGACTAAACACACACTCTTACAGACGCTTTGCGGGGGTTATCTGAGATCACATATAAAAATGGTGAAGGGAGTTGCAGTTCTTAACAGCAGTGAGGGTGTTAGTGGCACCATCCTCTTCGAACAAGAGACAGAAGGTGCTCCCACTACTGTAACTGGAAACCTTTCTGGCCTTAAACCTGGACCCCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGCCCTCATTACAATCCTCATGGAAAGGAACATGGTGCTCCAGATGATGAGGTTCGCCATGCTGGTGATCTTGGGAATGTTACAGTAGGCGAAGATGGTACTGCAAAATTCACCATTGTTGATAAGCAGATTCCACTAATTGGATCTCAATCCATCATTGGAAGGGCTGTAGTTGTCCATGCTGATGCTGATGATCTTGGAAAGGGTGGCCATGAGCTCAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTACAAGCTTGATTGTCTACTGCTCTCATCTCCTATTCCAGGGAATACTGAGGCTTTCTTTCTTGAAAAAAAAACCATATAAAAATTAGATGTATCTCCATACTTTCTCACTCTCTCCATAAGTTATGGTTGTGTCATTGCTGCGTTGTTGTTCTCAATAAAGTATTCCCTGTGCTATTTTAATACTTGAATATCTTTTGAGCCAAGTTTTGAATC | |||||||||