| mature miRNA: TGTGTTCTCAGGTCACCCCT species: Poncirus trifoliata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188277455|gb|EY811609.1|EY811609 PT11-C1-900-019-D01-CT.F Poncirus trifoliata leaf, greenhouse plant Citrus trifoliata cDNA, TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCAAATCACAAAAAATCTGCTGCGGATTGCGAGTGGGTTTGGTAATTGTTAGAATCCACAACGGGCCTTCCCCCCCCTTTTAGCAGGGTCAGCTGGGTTCAGTTTCTTCTTCTGAGAACCTGCAACAAACATCAGGAAACAGTCAAATTTATGGAGCCTCACGCCAGACTGAACCCTCAAATTCAGGGTCTCAAGGGACAATGTCTCCGTTTCGTTCTGGCTCTGTTCCCGTAGGGTTTTATGCATTGCAAAGGGAGAGTGTATTTCCAGAGAGACCTGGCCAGCCTGAATGCCAGTTTTACATGAAGACTGGAGATTGTAAGTTTGGTGCTGTTTGTAGGTTCCATCATCCAAGAGAAAGACTACTTCCTGTTCCAGACTGTGTATTGAGTCCCATAGGTCTACCACTACGTCCGGGAGAACCTTTGTGCATCTTCTACTCTCGTTATGGCATATGCAAGTTTGGTCCAAGTTGCAAGTTTGATCATCCAATGGGAATTTTCACATACAATCTCTCTGCATCATCTTCAGCTGATGCCCCGGTCCGACGATTTTTGGGGTCATCATCTGCAACTGGTGCATTAAATTTATCGTCGGAAAGCCTAATTGAAACAGGCTCGGGCAGGCGACTTTCGTTACCTGAAACTAGACAGATGTCTTCTGGTGGATGATGAAATTGGCACCAAGGGGATAAGCCTTGTCTCAAGTGAAGCCCTGGGTAACTTTCCGCGATATTTGATTGGACAGTGAAGTAATCTGTAAATTCATTCCCGGTGCTGGAAAAGTAAAAATTCATGTCAGGTTCGTAAGGGTCGTCTGAGAATACAATTCAAGTGACAGGCGTGGACCCGAAATTCCTGGGTGCGGGTTGGATAAGAAACTTAAAAAATTGGCCGATAGGAGAAAAC | |||||||||
gi|57869913|gb|CX635178.1|CX635178 UCRPT02_10B08_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifolia TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTAGTAAAAAAAGATTTCCTTAAGAAGAAAAAAAAAAGGACCCAATAAAAAGATAATGAAAATTTTCAAACATCCACCGCATAAATGTATTCAAGTTGCGTGTGCGACATGATGATGGGGACATCGTGACTGTTTGTTTCTTCTCCTTACATTTCCTCATCATGGCTTTTCACATAATTATGGGGAAATTGAAATGAATTATTTGCAACCAGAGCATAACTTGCCGCATCCCTTCGGCCGCGTAATGCTTCGTTACTCGATTATGCCGTGACAGACGTACGCACTACACGACGAACTGCGTCGACCTTCTCGCAATTTCCCTGAAACATGCAAGATCGAAAGCGTATGTATGTTGTTAATCAAAATTAAAGATTGAATCAAAAGCAGCGAATGTTAGAGCAATTGAGTAACTTGATGACAAGTGCTGATTGACAATTGAATTCCCAAAGGGGTGACCTGAGAACACAAGCCTC | |||||||||
gi|55292653|gb|CV710285.1|CV710285 UCRPT01_0014C13_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cD TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): CTCTCTCTCTACAAGCCCTCTTCATTTTCCTCCCTCCAAGGGGTGTTCTGAGATCACACAGCACAATGGTGAAAGCAGTTGCAGTTCTTGGTGGAACTGAGGGTGTCAAGGGAACTGTTTCCTTTGCCCAGGAAGGAGATGGTCCAACAACTGTATCAGGAAGCCTCTCTGGTCTCAAGCCTGGTCCTCATGGATTCCATGTTCATGCTCTTGGTGACACAACAAATGGTTGCATGTCTACTGGACCCCACTTTAACCCTGCTGGAAAAGAACATGGAGCTCCAGAGGATGATAATCGTCATGCTGGTGATTTAGGAAATGTCAATGTTGGTGATGATGGTACTGCTACTTTTACAGTTGTTGACAATCAGATTCCTCTTTCTGGACCAAATTCTATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGATGATCTTGGCAAGGGTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGGTGGCAGAGTAGCTTGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCTCTTTGGACCATAATAAATTCATTTGATATGATGTGTTGAATGCATTCTGGTCCATATATGCTTGAGTGTGACTTTTTGAGACTATGATTTTGAATAAGAGAAATCTAAAACTTTGTTGTGTAAAAAAAAAAAAAAAAA | |||||||||
gi|55294410|gb|CV712042.1|CV712042 UCRPT01_0016N14_r Poncirus trifoliata CTV-challenged cDNA library - AGI2 Citrus trifoliata cD TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GAGCTTGTCCACATTTTCCTGGTTCTTTGATGATGTGGGTATTCCACAAGATTACAGGCACATGGAAGGCTTCGGTGTTCAAACTTTTACACTGGTCAATAAGAATGGGAAAGTGCACTATGTGAAATTCCACTGGAAACCAACTTGTGGAGTTAAGTGTTTGACAGATGAAGAAGCAGTAAAAGTTGGTGGATCTAATCACAGCCACGCTACTCAGGATCTCTACGACTCAATTGCAGCTGGAAACTATCCTGAGTGGAAACTCTACATTCAGACTATTGATCCCGATCACGAGGACCAATTTGACTTTGACCCACTGGACGTAACCAAGTGGTGGCCTGAGGACATCATCCCTCTGCAGCCAGTTGGACGCTTGGTCTTGAACAAGAACATCGATAATTTCTTTGCGGAAAATGAAATGCTTGCATTTAACCCTGGTATCGTGGTTCCTGGGATCTACTACTCAAATGATAAGATGCTCCAATGTCGAATCTTTGCCTATGGTGATACCCAGAGGCATCGTCTTGGACCCAACTACTTGATGCTTCCAGTTAATGCACCCAAATGTCCTCATCGCAACAATCATTATGATGGTTTCATGAATTTCATGCACAGGGATGAGGAGGTCGATTACTTTTCCTTCG | |||||||||
gi|57876164|gb|CX641335.1|CX641335 UCRPT02_52D01_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifolia TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): TTGACTTTGACCCACTGGACGTAACCAAGTGGTGGCCTGAGGACATCATCCCTCTGCAGCCAGTTGGACGCTTGGTCTTGAACAAGAACATCGATAATTTCTTTGCGGAAAATGAAATGCTTGCATTTAACCCTGGTATCGTGGTTCCTGGGATCTACTACTCAAATGATAAGATGCTCCAATGTCGAATCTTTGCCTATGGTGATACCCAGAGGCATCGCCTTGGACCCAACTACTTGATGCTTCCAGTTAATGCACCCAAATGTCCTCATCGCAACAATCATTATGATGGTTTCATGAATTTCATGCACAGGGATGAGGAGGTCGATTACTTTCCTTCGAGGTATGATCCTACTCGTCATGCTGAGAGATATCCCATTCCTTCTGATGTAATTACAGGAAGGCGTGAGAAGGCTTGCATTGAGAAGGAAAACAACTTCAAGCAGCCTGGAGAGAGATACCGATCCTGGGCCCCAGACAGGCAAGAGAGGTTCCTTAATCGATGGATTAAGGCTTTATGTGACCCACGTATCACCCATGAGGTTCGCAGCATATGGGTCTCTTATTGGTCTCAGGCTGACAGATCTCTGGGTCAGAAGCTAGCTTCTCGTCTCAATGTGAGGCCAAGCATTTGAAGGTGTCACTTGAACTGGAACACTGGATGCTTTTGACTTGCCAAGAGTGAGCAAGGAGTGAACACCAAGGGTGCAGCTATGTGAAGAATTTCGATCCTATGTTTGCTGTTGTATATTGTAATATAGAAAATAAACTTGCATGTTATGTGACTCTTTTCCTATTGTTTCAATTAATAAAAGTCTGCCTC | |||||||||
gi|57571560|gb|CX544535.1|CX544535 UCRPT01_5_014_B05_T3 Poncirus trifoliata CTV-challenged cDNA library - UCRPT01-UCR2 Citrus tr TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): GTTTCTTTGAGTGCACCCATGATATTTCTCACCTTACTTGTGCTGATCTTTTTCGAGCTCCAGGGGTTCAGACACCTGTCATTGTTCGCTTCTCCACTGTTATCCATGAGCGGGGCAGCCCTGAGACACTCAGGGATCCTCGAGGATTTGCAGTCAAGTTTTACACCAGAGAGGGTAATTGGGATCTTCTGGGTAACAGTATCCCTGTTTTTTTCATCCGTGATGCAATCAAATTCCCAGATGTGATCCATGCTTTTAAACCTAATCCAAAGTCTCACATCCAAGAGTACTGGAGGATCCTCGACTTCTGCTCCCACCTTCCTGAAAGCTTGTCCACATTTTCCTGGTTCTTTGATGATGTGGGTATTCCACAAGATTACAGGCACATGGAAGGCTTCGGTGTTCAAACTTTTACACTGGTCAATAAGAATGGGAAAGTGCACTATGTGAAATTCCACTGGAAACCAACTTGTGGAGTTAAGTGTTTGACAGATGAAGAAGCAGTAAAAGTTGGTGGATCTAATCACAGCCACGCTACTCAGGATCTCTACGACTCAATTGCAGCTGGAAACTATCCTGAGTGGAAACTCTACATTCAGACTATTGATCCCGATCACGAGGACCAATTTGACTTTGACCCACTGGACGTAACCAAGTGGTGGCCTGAGGACATCATCCCTCTGCAGCCAGTTGGACGCTTGG | |||||||||
gi|57873516|gb|CX638687.1|CX638687 UCRPT02_36E10_b Poncirus trifoliata Roots with Iron Deficiency - UCRPT02-UCR1 Citrus trifolia TGTGTTCTCAGGTCACCCCT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTAGTAAAAAAAGATTTCCTTAAGAAGAAAAAAAAAAGGACCCAATAAAAAGATAATGAAAATTTTCAAACATCCACCGCATAAATGTATTCAAGTTGCGTGTGCGACATGATGATGGGGACATCGTGACTGTTTGTTTCTTCTCCTTACATTTCCTCATCATGGCTTTTCACATAATTATGGGGAAATTGAAATGAATTATTTGCAACCAGAGCATAACTTGCCGCATCCCTTCGGCCGCGTAATGCTTCGTTACTCGATTATGCCGTGACAGACGTACGCACTACACGACGAACTGCGTCGACCTTCTCGCAATTTCCCTGAAACATGCAAGATCGAAAGCGTATGTATGTTGTTAATCAAAATTAAAGATTGAATCAGAAGCAGCGAATGTTAGAGCAATTGAGTAACTTGATGACAAGTGCTGATTGACAATTGAATTCCCAAAGGGGTGACCTGAGAACACAAGCCTC | |||||||||