| mature miRNA: TGTGTTCTCAGGTCACCCCTT species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|95852741|gb|DY025836.1|DY025836 47RDOAH_UP_003_C08_27JUL2004_060 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): AATCGCTCGAGGTTTGACCTGAGATCACAACAGAATCAATCTCTACTCGAAACCCTTCCGAGTCACCATCACGATGTGGAGAAGAATCGTCTCTTCCGGTCTCAAAACCCTAGCCGCCGATGTCGCCGTCGCTTCTCCTTCTCGTCGATCGATTCCCGCCGCCGCGAGACCTGTCGGCTTCCTCCTCTCCGCCGATCGATCATCCGTTTCTGCTCCCGCCTCCTTCATCACTCGCCATTTCAGCTCGGAACCAGTAGTAGGGACCCCTGCGACTAAGAAGGTGGAGGATGTGATGCCCATTGCTACTGGTCATGAGAAGGAAGAGCTTGAAGCTGAACTTGAGGGGAGGAGGTTGCTTGATATTGACTTCCCCGAAGGTCCTTTTGGAACAAAGGAAGCTCCTGCTATTGTAAAATCCTACTATGACAAGCGGATTGTGGGGTGCCCTGGTGGGGAAGGAGAGGAGGAGCACGATGTTGCGTGGTTTTGGCTGGAGAAAGGAAAGTCTTTTGAGTGTCCGGTCTGCACTCAGTACTTTGAGCTGGAAGTGGTTGGTCCTGGTGGACCTCCCGATGGTCACGGTGATGAAGACGATGAGCACCATCACTGAAAGACTAACGTTTTTGTTTTCAGGGTTTTCAA | |||||||||
gi|308673222|gb|DK478054.1|DK478054 DK478054 full-length kale cDNA library (capsules) Brassica oleracea var. acephala cDNA clone TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GAAAGGCCACTAAAAAAACGTTCGAATCGGTGAAGAGGTTTGGCTAATCGCTCGAGGTTTGACCTGAGATCACAACACTCGAAACCCTTCCGAGTCACCATCACGATGTGGAGAAGAATCGTCTCTTCCGATCTCAAAACCCTAGCCGCCGATGTCGCCGTCGCTTCTCCTTCTCGTCGATCGATTCCCGCCGCCGCGAGACCCGTCGGCTTCCACCTCTCTGCCGATCGATCATCCGTTTCTGCTCCCGCCTCCTTCATCACTCGCCATTTCAGCTCGGAACCAGTAGGCGGGACCCCTGCGACTAAGAAGGTGGAGGATGTGATGCCCATTGCTACTGGTCATGAGAAGGAAGAGCTTGAAGCTGAACTTGAGGGTAGGAGGCTGCTTGACATTGACTTCCCCGAAGGTCCTTTTGGAACAAAGGAAGCTCCTGCTATTGTAAAATCCTACTATGACAAGCGGATTGTGGGGTGCCCTGGTGGTGAAGGAGAGGAGGAGCACGATGTTGTGTGGTTTTGGCTGGAGAAAGGAAAGTCTTTTGAGTGCCCGGTCTGCACTCAGTACTTTGAGCTGGAAGTGGTTGGTCCTGGTGGACCTCCCGATGGTCACGGTGATGAAGACGATGAGCACCATCACTGAGAGACTAACATTTTGTTTTCAGGGTTTTCAAAAGTTCTACTTCTACATTTCTTTGTTGGAATAAACAAATGTTTTTCGATCCTTTTGAAACAACACGCAGCATCGGAGTTTCTAAATGCCAAACTCTTATGACCGTGGTTTCCCCTTTTTGTAACAACTCTTGA | |||||||||
gi|308701368|gb|DK465761.1|DK465761 DK465761 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GGCTAAAAAAACGTTCGAATCGGTGAAGAGATTTGGCTAATCGCTCGAGGTTTGACCTGAGATCACAACACTCGAAACCCTTCCGAGTCACCATCACGATGTGGAGAAGAATCGTCTCTTCCGGTCTCAAAACCCTAGCCGCCGATGTCGCCGTCGCTTCTCCTTCTCGTCGATCGATTCCCGCCGCCGCGAGACCCGTCGGCTTCCACCTCTCTGCCGATCGATCATCCGTTTCTGCTCCCGCCTCCTTCATCACTCGCCATTTCAGCTCGGAACCAGTAGGCGGGACCCCTGCGACTAAGAAGGTGGAGGATGTGATGCCCATTGCTACTGGTCATGAGAAGGAAGAGCTTGAAGCTGAACTTGAGGGTAGGAGGCTGCTTGACATTGACTTCCCCGAAGGTCCTTTTGGAACAAAGGAAGCTCCTGCTATTGTAAAATCCTACTATGACAAGCGGATTGTGGGGTGCCCTGGTGGTGAAGGAGAGGAGGAGCACGATGTTGTGTGGTTTTGGCTGGAGAAAGGAAAGTCTTTTGAGTGCCCGGTCTGCACTCAGTACTTTGAGCTGGAAGTGGTTGGTCCTGGTGGACCTCCCGATGGTCACGGTGATGAAGACGATGAGCACCATCACTGAGAGACTAACATTTTGTTTTCAGGGTTTTCAAAAGTTCTACTTCTACATTTCTTTGTTGGAATAAACAAATGTTTTTCGATCCTTTTGAAACAACACGCAGGCATCGGAGTTTCTAAATGCCAAAACTCTATGACCGTGGTTTCCCCTTTTTGTAACAACTCTGAATCTGAATCGGCCTTGCCTCTTGAGCAGATGTTCATACCTCCTTCTTAAAAAAAAAAAAAAAAA | |||||||||
gi|122030836|gb|EH419701.1|EH419701 OL4071R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): TTCACTTCCAAAGGGGTACCCTGAGATCACAAAGGATCACAAAACTATGGCCAAGGGAGTTGCAGTTCTGAACAGCAGTGAGGGTGTTAAGGGGACCATCTTCTTCACCCATGAAGGAAACGGTGCCACTACTGTGACAGGAACTGTTTCTGGCCTTAAACCTGGTCTCCATGGTTTCCATGTCCATGCTCTTGGTGACACCACTAACGGTTGCATGTCTACCGGTCCACATTTCAACCCTGATGGTAAAACTCACGGTGCACCGGAGGATGCTAATCGTCATGCTGGCGATCTAGGAAACATCATTGTTGGGGATGATGGAACTGCCACCTTCACAATCACT | |||||||||
gi|308709916|gb|DK471068.1|DK471068 DK471068 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GAAATGGAATGTCGAGCTCAAAATTTATTATTCTTAATAACATTTTTATGTTTAACATGGGTTCTTAAAAAAAAAGGCAAAAAAATAAATGAAAAAAAAAGAAATTAGACAGAACAACTGTCTAAATTAGGAGTTTTAGAACAGCTAAAAACCCCATATGTGGCAGTTTGATATAGGCTAATCTTTAGGCAAAAGGAGAAAAAAAATCAAATCTTTTGCGTTGAGTTTGTGTGTTGATTTTAAGCAAAAACGTTCGCGGGATCTTTGGAGGTGTGACCTGAGATCACGAAACAAACAATCTCTACTCGACTCATTCATCACACACCATGTGGAGAAGAATCGTATCCTCTCATCTCAAAGTCCGATGTCGCCGCTGCTTCTCCTCGCCGATCCATAGCCACCACCACCGCGAGACCCGTTGGCTTCCATCGCGCAGCCAATCCCGCTTCGTCTTCTTCCGTCATCCATCGCTGTTTCAGCTCTGAATCAGTGGAGACAATAGCGAAGAAGAAGGTGGAGGATGTTATGCCCATTGCAACTGGACACGAGAAGGAGGAGCTTGAAGATGAACTTGAGTGACTATCTGTTCAAGCTTTCGCTTATTGGTGACTCTGGTGTTAGAAAATCCTGCTTGCACGTGTGGTGATGTAGGTCATTTCGCAACAGGGCAAACGGCGGCGGATACGTCGGAGGTGGAGGTGGAGGTGGCGGTGGAAACACTTGCTATACCTGTGGCGGAGTTGGACACATGGCTAGAGTTTGCACAAGCAAGAGACAGTCTGGTGGTGGTGGTGGTGGTGCTTGTTATGAGTGTGGAGGCATTGG | |||||||||
gi|308660116|gb|DK483798.1|DK483798 DK483798 full-length kale cDNA library (leaves) Brassica oleracea var. acephala cDNA clone K TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GAAGCAGATTCTCCCCCAGATTATTCACTTCCAAGCCATTTCATCTTTATTCACTTCCAAAGGGGTACCCTGAGATCACAAAGGATCACAAAACTATGACCAAGGGAGTTGCAGTTCTGAACAGCAGTGAGGGTGTTAAGGGGACCATCTTCTTCACCCATGAAGGAAACGGTGCCACTACTGTGACAGGAACTGTTTCTGGCCTTAAACCTGGTCTCCATGGTTTCCATGTCCATGCTCTTGGTGACACCACTAACGGTTGCATGTCTACCGGTCCACATTTCAACCCTGAGGGTAAAACTCACGGTGCACCGGAGGATGCTAATCGTCATGCTGGCGATCTAGGAAACATCATTGTTGGGGATGATGGAACTGCCACCTTCACAATCACTGACAGCCAGATTCCCCTTAGTGGACCAAACTCTATTGTCGGAAGGGCTGTTGTTGTCCACGCAGACCCTGATGACCTCGGAAAGGGAGGCCATGAACTCAGCTTGTCTACTGGAAACGCAGGCGGCCGTGTTGCTTGTGGTATTGTTGGTCTTCAGGGCTAAGCTGCTGCTTTTCGACGAAGAGAGTGATGTAATAAGGAGGTCCGACCTCTAGACATGGCTAGTTTGTGTATCTTTGGTGTGTGTGTGTGGAGACATGGCTAGTTTGTGTATCTTTGGTGTGTTTGTGTGGCTGTAATCATTGAGCTTAGTGGCTCATTGCTTTTGGTTTAAGACAAAAGAACACGGAATATTTTCTGTTTCATGAATAACCGAGA | |||||||||
gi|75972742|gb|AM059995.1|AM059995 AM059995 AAFC_WHRI_BoE01a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE01a013L18 TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): TCTTATTCACTTCCAAAGGGGTACCCTGAGATCACAAAGGATCACAAAACTATGGCCAAGGGAGTTGCAGTTCTGAACAGCAGTGAGGGTGTTAAGGGGACCATCTTCTTCACCCATGAAGGAAACGGTGCCACTACTGTGACAGGAACTGTTTCTGGCCTTAAACCTGGTCTCCATGGTTTCCATGTCCATGCTCTTGGTGACACCACTAACGGTTGCATGTCTACCGGTCCACATTTCAACCCTGATGGTAAAACTCACGGTGCACCGGAGGATGCTAATCGTCATGCTGGCGATCTAGGAAACATCATTGTTGGGGATGATGGAACTGCCACCTTCACAATCACTGACAGCCAGATTCCCCTTAGTGGTCCAAACTCTATTGTCGGAAGGGCCGTTGTTGTCCACGCAGACCCTGATGACCTCGGAAAGGGAGGCCATGAACTCAGCTTGTCTACTGGAAACGCAGGCGGCCGTGTTGCTTGTGGTATTATTGGTCTTCAGGGCTAAGCTGTTGCTTTTCGA | |||||||||
gi|112355654|gb|AM391102.1|AM391102 AM391102 AAFC_WHRI_BoE02a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE02a015G1 TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GCGTCCGCCCACGCGTCCGGCATCGACGAAGAGACTCGAAGAANNNNNAAAAAAAACGTACGCGGATCCTTGGAGGTGTGACCTGAGATCACGAAACAACTCGATCATTCATCACCGTCACCATGTGGAGAAGAATCGTATCCTCTCATCTCAAAACCCTAGCCGCCGATGTCGCCGCTGCTTCTCCTCGTCGTTCGATAGCCACCACCACCACCGCGAGACCCGTTGGCTTCCATCGCGCTGACAATCCCGCTTCTTCTTCTTCCGTCACCCCTCGCTGTTTCAGCTCCGAATCAGTAGAGACAATAGCGAAGAAGAAGGTGGAGGATGTTATGCCCATTGCAACTGGGCACGAGAAGGAGGAGCTTGAAGCTGAACTTGAGGGGAGGAGGCTGCTTGACATTGACTTCCCCGAAGGTCCTTTTGGAACTAAGGAAGCTCCTGCTATGGTAAAGTCCTACTATGACAAGCGTATTGTGGGATGCCCTGGTGGTGAAGGCGAGGATGAACACGACGTTGTGTGGTTCTGGCTGGAGAAAGGAAAGTCTTTTGAATGCCCGGTTTGCACACAGTACTTTGAGCTAGNAGTGGTTGGTCCAGGTGGGCCTCCTGATGANG | |||||||||
gi|122030853|gb|EH419718.1|EH419718 OL4079R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabr TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): TTCACTTCCAAAGGGGTACCCTGAGATCACAAAGGATCACAAAACTATGGCCAAGGGAGTTGCAGTTCTGAACAGCAGTGAGGGTGTTAAGGGGACCATCTTCTTCACCCATGAAGGAAACGGTGCCACTACTGTGACAGGAACTGTTTCTGGCCTTAAACCTGGTCTCCATGGTTTCCATGTCCATGCTCTTGGTGACACCACTAACGGTTGCATGTCTACCGGTCCACATTTCAACCCTGATGGTAAAACTCACGGTGCACCGGAGGATGCTAATCGTCATGCTGGCGATCTAGGAAACATCATTGTTGGGGATGATGGAACTGCCACCTTCACAATCACTGACAGCCAGATTCCCCTTAGTGGTCCAAACTCTATTGTCGGAAGGGCCGTTGTTGTCCACGCAGACCCTGATGACCTCGGAAAGGGAGGCCATGAACTCAGCTTGTCTACTGGAAACGCAGGCGGCCGTGTTGCTTGTGGTATTATTGGTCTTCAGGGCTAAGCTGTTGCTTTTCGACGAAGAGAGTGATGTAATAAGGAGGTTCGACCTCTAGACATGGCTAGTTTGTGTATCTTTGGTGTGTGTGTGTGTGGCTGTAATAATTGAGCTTAGTGGCTCATTGCTTTTGGTTTAAGACGAAAGAACACATAATGTTTTCTGTTTCATGAAT | |||||||||
gi|113705235|gb|AM395192.1|AM395192 AM395192 subtracted bud Brassica oleracea var. italica cDNA clone AAFC_WHRI_Zennia017E05_M13 TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GCGGGGGAATCGGTGAAGAGGTTTGGCTAATCGCTCGAGGTTTGACCTGAGATCACAACAGAATCAATCTCTACTCGAAACTCTTCCGAGTCACCATCACGATGTGGAGAAGAATCGTCTCTTCCGGTCTCAAAACCCTAGCCGCCGATGTCGCCGTCGCTTCTCCTTCTCGTCGATCGATTCCCGCCGCCGCGAGACCCGTCGGCTTCCTCCTCTCCGCCGATCGATCATCCGTTTCTGCTCCCGCCTCCTTCATCACTCGCCATTTCAGCTCGGAACCAGTAGTAGGGACCCCTGCGACTAAGAAGGTGGAGGATGTGATGCCCATTGCTACTGGTCATGAGAAGGAAGAGCTTGAAGCTGAACTTGAGGGGAGGAGGTTGCTTGATATTGACTTCCCCGNNNNTCCTTTTGGA | |||||||||
gi|150134894|gb|EE535857.1|EE535857 49RDOAT_UP_044_B05_08OCT2004_045 O. Alba 49RDOAT Brassica oleracea cDNA 5', mRNA sequence TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): CCCCCACACTATACACTTCCAAGGCATTTCATCTTATTCACTTCCAAAGGGGTACCCTGAGATCACAAAGGATCACAAAACTATGGCCAAGGGAGTTGCAGTTCTGAACAGCAGTGAGGGTGTTAAGGGGACCATCTTCTTCACCCATGAAGAAAACGGTGCTACTACTGTGACAAGAACTGTTTCTGGCCTTAAACCTGGTCTCCATGGTTTCCATGTCCATGCTCTTGGTGACACCACTAACGGTTGCATGTCTACCGGTCCACATTTCAACCCTGATGGTAAAACTCACGGTGCACCGAAGGATGCTAATCGTCATGCTGGCAATCTAGGAAACATCATTGTTGGGGATGATGGAACTGCCACCTTCACAATCACTAACAGCCAG | |||||||||
gi|112353564|gb|AM389793.1|AM389793 AM389793 AAFC_WHRI_BoE02a Brassica oleracea var. alboglabra cDNA clone AAFC_WHRI_BoE02a009D0 TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GCGTCCGAAAAAACGTTCGAATCGGTGAAGAGGTTTGGCTAATCGCTCGAGGTTTGACCTGAGATCACAACAGAATCAATCTCTACTCGAAACCCTTCCGAGTCACCATCACGATGTGGAGAAGAATCGTCTCTTCCGGTCTCAAAACCCTAGCCGCCGATGTCGCCGTCGCTTCTCCTTCTCGTCGATCGATTCCCGCCGCCGCGAGACCCGTCGGCTTCCTCCTCTCCGCCGATCGATCATCCGTTTCTGCTCCCGCCTCCTTCATCACTCGCCATTTCAGCTCGGAACCAGTAGTAGGGACCCCTGCGACTAAGAAGGTGGAGGATGTGATGCCCATTGCTACTGGTCATGAGAAGGAAGAGCTTGAAGCTGAACTTGAGGGGAGGAGGTTGCTTGATATTGACTTCCCCGAAGGTCCTTTTGGAACAAAGGAAGCTCCTGCTATTGTAAAATCCTACTATGACAAGCGGATTGTGGGGTGCCCTGGTGGGGAAGGAGAGGAGGAGCACGATGTTGTGTGGTTTTGGCTGGAGAAAGGAAAGTCTTTTGAGTGTCCGGTCTGCACTCAGTACTTTGAGCTGGAAGTGGTTGGTCCTGGTGGACCTCCCGATGGTCACGGTGATGAAGACGATGAGCACCATCACTGAGAGACTAACGTTTTGNNTTCA | |||||||||
gi|308712083|gb|DK459719.1|DK459719 DK459719 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TGTGTTCTCAGGTCACCCCTT EST sequence (targeted fragment marked with yellow): GAGATTCTCCCCCAGATTATTCACTTCCAAGCCATTTCATCTTTATTCACTTCCAAAGGGGTACCCTGAGATCACAAAGGATCACAAAACTATGGCCAAGGGAGTTGCAGTTCTGAACAGCAGTGAGGGTGTTAAGGGGACCATCTTCTTCACCCATGAAGGAAACGGTGCCACTACTGTGACAGGAACTGTTTCTGGCCTTAAACCTGGTCTCCATGGTTTCCATGTCCATGCTCTTGGTGACACCACTAACGGTTGCATGTCTACCGGTCCACATTTCAACCCTGAGGGTAAAACTCACGGTGCACCGGAGGATGCTAATCGTCATGCTGGCGATCTAGGAAACATCATTGTTGGGGATGATGGAACTGCCACCTTCACAATCACTGACAGCCAGATTCCCCTTAGTGGACCAAACTCTATTGTCGGAAGGGCTGTTGTTGTCCACGCAGACCCTGATGACCTCGGAAAGGGAGGCCATGAACTCAGCTTGTCTACTGGAAACGCAGGCGGCCGTGTTGCTTGTGGTATTGTTGGTCTTCAGGGCTAAGCTGCTGCTTTTCGACGAAGAGAGTGATGTAATAAGGAGGTCCGACCTCTAGACATGGCTAGTTTGTGTATCTTTGGTGTGTGTGTGTGGAGACATGGCTAGTTTGTGTATCTTTGGTGTGTTTGTGTGGCTGTAATCATTGAGCTTAGTGGCTCATTGCTTTTGGTTTAAGACAAAAGAACACGGAATATTTTCTGTTTCATGAATAACCGAGATGGTTGAAAACAATAAAATAATATTGATA | |||||||||