| mature miRNA: TGTGTTCTCAGGTCGCCCCT species: Elaeis guineensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161979210|gb|EL693116.1|EL693116 OPR03159 Elaeis guineensis root Elaeis guineensis cDNA clone OPVRXX_A2320.seq, mRNA sequence TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): ACTTGTTCCAGACTCTTCTACCGCTCTTCCAAGGAGTGGCCTGAGATCACGTACGAAAATGGCAAAGGCTGTTGCCGTTCTTGGTGGCACTGAGGGTGTCACAGGCACTGTGTACTTCACCCAGGAAGGAGATGGCCCTACTACAGTGACTGCAAACATCTCTGGCCTCAAACCGGGGCTTCATGGCTTCCATGTTCATGCTCTGGGGGACACCACCAATGGTTGCATGTCTACCGGGCCGCATTTTAATCCTCATGGGAAGGAACATGGGGCACCTGAAGATGAGAACCGCCATGCTGGTGATCTTGGGAATGCGACTGCGGGCGAGGATGGTACTGTTACTTTCAGCATTGTTGACAACCAGATTCCCCTCTCTGGACCAAAGTCTATTGTTGGAAGGGCTGTTGTTGTCCATGCTGATCCTGATGACCTTGGGAAGGGTGGTCATGAGCTTAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGCGTTATCGGTCTGCAAGGATAAGTTACTTGATCTGCATTTTCAGGGTAAGTTTGTGATGTGAGAGGGCCTATGTACCACAAGTCAACGGCATGTTTCCTTTTCTAAGTTTGTAGGAAAACATCAGCGCGATTGCTAAATAAGAAAGAATGTAGTTTTTGGGACCCGGCATGCTGTAGCATTTGTTGTGCTGTCACCTTCTATATATGTTGTTCCTAGGCAAGTATATTGTATGATTACCACTC | |||||||||
gi|161980474|gb|EL689499.1|EL689499 OPSC01274 Elaeis guineensis Suspension cell cultures Elaeis guineensis cDNA clone 196-E4-T3. TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): TCTCTTCTACCGCTCTTCCAGGAGTGGCCTGAGATCACGTACGAAAATGGCAAAGGCTGTTGCCGTTCTTGGTGGCACTGAGGGTGTCACAGGCACTGTGTACTTCACCCAGGAAGGAGATGGCCCTACTACAGTGACTGCAAACATCTCTGGCCTCAAACCGGGGCTTCATGGCTTCCATGTTCATGCTCTGGGGGACACCACCAATGGTTGCATGTCTACCGGGCCGCATTTTAATCCTCATGGGAAGGAACATGGGGCACCTGAAGATGAGAACCGCCATGCTGGTGATCTTGGGAATGCGACTGCGGGCGAGGATGGTACTGTTACTTTCAGCATTGTTGACAACCAGATTCCCCTCTCTGGACCAAAGTCTATTGTTGGAAGGGCTGTTGTTGTCCATGCTGATCCTGATGACCTTGGGAAGGGTGGTCATGAGCTTAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGCGTTATCGGTCTGCAAGGATAAGTTACTTGATCTGCATTTTCAGGGTAAGTTTGTGATGTGAGAGGGCCTATGTACCACAAGTCAACGGCATGTTTCCTTTTCTAAGTTTGTAGGAAAACATCAGCGCGATTGCTAAATAAGAAAGAATGTAGTTTTTGGACC | |||||||||
gi|56930070|gb|CN600730.1|CN600730 EG-F01_002_F03 Oil palm female inflorescence Lambda Zap Library Elaeis guineensis cDNA, mRNA TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): ATTCTTGTTCTCTTCTCCTCAAAGGGGTCGCCTGAGATCACATAAAAAATGGTGAAGGCTGTTGCTGTACTTGGTGGTAGTGAGGGTGTCAAAGGCACTGTTTACTTCACCCAAGAAGGAGATGGTCCAACAACAGTGACTGGAAGCCTCTGTGGCCTCAAACCTGGGCTTCATGGCTTCCATGTTCATGCCCTTGGTGACACTACTAATGGCTGCATGTCCACTGGACCACATTTCAATCCTGCTGGACATGAACATGGGGCACCTGAAGATGAGATCCGCCATGCTGGTGATCTTGGAAATGTGACTGCTGGTGCTGATGGTACTGTTAATTTTACCATTATTGACAGCAAGATTCCACTGTCTGGATCAAATTCGATTATTGNAAGGGCTGTNNNNGTCCATGCTGATCCTGATGATCTTGGAAANNNTNNA | |||||||||
gi|161974307|gb|EL686720.1|EL686720 OPVM00326 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone 85-D10-T3.seq, mRNA sequ TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): TCTCTTGTTCCAGACTCTTCTAGCGCTCTTCCAAGGAGTGGCCTGAGATCACGTACGAAAATGGCAAAGGCTGTTGCCGTTCTTGGTGGCACTGAGGGTGTCACAGGCACTGTGTACTTCACCCAGGAAGGAGATGGCCCTACTACAGTGACTGCAAACATCTCTGGCCTCAAACCGGGGCTTCATGGCTTCCATGTTCATGCTCTGGGGGACACCACCAATGGTTGCATGTCTACCGGGCCGCATTTTAATCCTCATGGGAAGGAACATGGGGCACCTGAAGATGAGAACCGCCATGCTGGTGATCTTGGGAATGTGACTGCGGGCGAGGATGGTACTGTTACTTTCAGCATTGTTGACAACCAGATTCCCCTCTCTGGACCAAAGTCTATTGTTGGAAGGGCTGTTGTTGTCCATGCTGATCCTGATGACCTTGGGAAGGGTGGTCATGAGCTTAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGCGTTATCGGTCTGCAAGGATAAGTTACTTGATCTGCATTTTCAGGGTAAGTTTGTGATGTGAGAGGGCCTATGTACCACAAGTCAACGGCATGTTTCCTTTTCTAAGTTTGTAGGAAAACATCAGCGCGATTGCTAAATAAGAAAGAATGTAGTTTTTGGACCCGCATGCTGTAGCATTTGTTGTGCTGTCACCTTCTATATATGTTGTTCCTAGGCAAGTATATTGTATGATTACCACTCGGCAAAGGTTGCATTTTGTCACTC | |||||||||
gi|161981070|gb|EL695093.1|EL695093 OPZE00179 Elaeis guineensis zygotic embryo Elaeis guineensis cDNA clone 184-H5-T3.seq, mRNA TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): TCTCTTCTACCGCTCTTCCAAGGAGTGGCCTGAGATCACGTACGAAAATGGCAAAGGCTGTTGCCGTTCTTGGTGGCACTGAGGGTGTCACAGGCACTGTGTACTTCACCCAGGAAGGAGATGGCCCTACTACAGTGACTGCAAACATCTCTGGCCTCAAACCGGGGCTTCATGGCTTCCATGTTCATGCTCTGGGGGACACCACCAATGGTTGCATGTCTACCGGGCCGCATTTTAATCCTCATGGGAAGGAACATGGGGCACCTGAAGATGAGAACCGCCATGCTGGTGATCTTGGGAATGCGACTGCGGGCGAGGATGGTACTGTTACTTTCAGCATTGTTGACAACCAGATTCCCCTCTCTGGACCAAAGTCTATTGTTGGAAGGGCTGTTGTTGTCCATGCTGATCCTGATGACCTTGGGAAGGGTGGTCATGAGCTTAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGCGTTATCGGTCTGCAAGGATAAGTTACTTGATCTGCATTTTCAGGGTAAGTTTGTGATGTGAGAGGGCCTATGTACCACAAGTCAACGGCATGTTTCCTTTTCTAAGTTTGTAGGAAAACATCAGCGCGATTGCTAAATAAGAAAGAATGTAGTTTTTGGACCCGCATGCTGTAGCATTTGTTGTGCTGTCACCTTCTATATATGTTGTTCCTAGGCAAGTATATTGTATGATTACCACTCGGCAAAGGTTGCATTTTGTCACTCAGTTAGCAAGCTTCGTTGTCTCGTATTGGATCTGATATCAGTATTATTTTATTACGATAG | |||||||||
gi|221144673|gb|GH636978.1|GH636978 EG-S41_002_F05 suspSSHS4, initiation library (embryogenic suspension cells cultivated in med TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): CCTGAATTAATGGTAAACATACATTTGTTACATCCGTAACACGTAACAATTACATTTCTGTTGCTTACCAATGTAAATCTACCTAAAATTGGGGGCCCACCAAAGCCTTCTTTGGCTCAACCCACAATTAAAGGGGAAAAATGGCTATGTCAGGAGCTCAGGAAGACAGTTCTTCATGCATCCTTTGTCTTCTTTTGCATCCTCTGTAGCTTCCTCCACTTGAGAAAGATCTGAAAGGAGAGACCTGAGAATACCATTACGACACTTCCCCATTGCTTCAGGGACAAGGGATTGCCGCTTAACAGGGAGGACACCACAATGCTCACAAACTTGCGGGTGGTTGTGATGGTAGTGTTGACAAGTGAGCCAAATCGGCTGATGGTCAGGAAAATGAAATTCTGCCCGATTGCCCCACAAAGGCAGAAGAGGAGGATGTCCCATGCTGCCTCTGGGTGTTCTCTGCAAAACTGCAGAGCCTTAAAACCACTTGCATGAGGCCAGCCAAACATATACACAACATTATAGATTGTGCCCCATAGATTCATCCCCAGCATTATATCCCACGCAATGGTCTTTGGATACCTANNNNGTATAGAATCCTNNNTAGCATTCGTAAAGCCATCAAACGCCCAGNNNNAAAGCAGAGTGCATAACCANNAGGAGNANTTGGANNNGCAAGCCTGCTTNTNGTCTTTGNGNTGGTCTNNNNANGTGCAAATGCTGATACCCCTCCAGCAACAAGGAAGGTGCATA | |||||||||
gi|161980032|gb|EL682235.1|EL682235 OPYF01335 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 199-E12-T3.seq, TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): TCCCGAACGGGAGAAAGAATAGTTGTCTTCTCCGCCGTCTCTCTCCCATTCTTGTTCTCTTCTCCTCAAAGGGGTCGCCTGAGATCACATAAAAAATGGTGAAGGCTGTTGCTGTACTTGGTGGCAGTGAGGGTGTCAAAGGCACTGTTTACTTCACCCAAGAAGGAGATGGTCCAACAACAGTGACTGGAAGCCTCTCTGGCCTCAAACCTGGGCTTCATGGCTTCCATGTTCATGCCCTTGGTGACACTACTAATGGCTGCATGTCCACTGGACCACATTTCAATCCTGCTGGACATGAACATGGGGCACCTGAAGATGAGATCCGCCATGCTGGTGATCTTGGAAATGTGACTGCTGGTGATGATGGTACTGTTAATTTTACCATTATTGACAGCAAGATTCCACTGTCTGGATCAAATTCGATTATTGGAAGGGCTGTAGTGGTCCATGCTGATCCTGATGATCTTGGAAAAGGTGGACACGAGCTGAGCAAGAGCACTGGAAATGCTGGTGGAAGAGTTGCTTGTGGCATTATTGGACTGCAGGCCTAAATGTCTTGTTCTGGATTTCTCGTCGGTTTGAGTTGGAACAGTCTTATCATGTACTTGAAGCGCTAGCTGACGTTTCCTTTCCCACATGCTGGGAAGACACGCTTATGTTGAATAAGAAACCTTATCTGAGTGTTTTGGCATCTTTAAGCAGCTGCTACCATGAATCTTTTTCAAGTATTTCATTCTTGCTTCTTCCTTTCTGCCCAATGTTTCATAACAGTGTGTGCGCCAAAGCGTTAAAGCT | |||||||||
gi|161980580|gb|EL681744.1|EL681744 OPYF00834 Elaeis guineensis young flower 4-6 cm Elaeis guineensis cDNA clone 190-B9-T3.seq, TGTGTTCTCAGGTCGCCCCT EST sequence (targeted fragment marked with yellow): TAGAGACAAGTCAGCTCCGCTGTCCCTTCCATTCTTGTTCTCTTCTCCACCAAGGGGTCGCCTGAGATCACATTGAAAAATGGTGAAAGGTGTTGCTGTACTTGGTTGCAGTGAGGGTGTCAAAGGCACTGTTTACTTCACCCAAGAAGGAGATGGTCCAACTACGGTAGCTGGAAGCCTCTCTGGTCTCAAACCTGGGCTTCATGGCTTCCATGTTCATGCCCTTGGTGACACTACTAATGGCTGCATGTCCACTGGACCGCATTTCAATCCTGCTGGAAAAGAACATGGGGCACCTGAAGATGATAATCGCCATGCTGGTGATCTTGGAAATGTGACTGTTGGTGATGATGGTACTGTTAGCTTCACCATTACTGACAACCAGATTTCGCTCTCTGGACCAAATTCAATCATTGGAAGGGCTGTTGTAGTCCATGCTGACCCTGATGATCTTGGAAAGGGCGGACATGAGCTTAGCAAGAGCACTGGAAATGCTGGTGGAAGGGTTGCTTGTGGCATTATTGGACTGCAGGCGTAAATTTCTTGTTCTGGATTTCCACTGTCGGTTTGAGGAACGGTCTTGTCATGTGCTTGAAGCACTAGCTGAAGTTTTCTTTCCCACATGCGGGGAAGATATTTTGAAATAAGAAACCTTATCTCATCGTGTGAGCATGCTTTCAGCAATTTGCTTCCATAAACTTCTTTGTGGTAGTGTTACGTATTCTTGCCTCTTCCTCTTTTACTCCTTTTCCTACTGCTGATGGTATCCAAATGTTCTCCATGTTTCAAAAATTAGTACAGATTGCATTGGTATGTAAATAGTTTTCTACACGCCTATCTTG | |||||||||