| mature miRNA: TGTGTTCTCAGGTCGCCCCTG species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270450315|gb|GT835722.1|GT835722 CCYO16052.g1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CAGACCCCAAGGACTTGGGGAAAAAAACTCATGTATGCAAAAATGGTGCTGCAAATGATGTATGGCATCTGGAATTCTGAACGGAGGTATCAAACAAGATAGTCCACTGAAACAAGATACCAGTGGTGGGCTGGGAACACATGTCAGTCCTCCAGGTAGCAGTCCGAAAGGTGATCCGATAGAGAATCATGGAAATAATACCTCCTCAAGATGTGTTGGAAAGCCAAAAGATGGCTATACAGGGAATGTGGTTCTGGCGCTACCAGTTGTAGATGATAGAACAAAAGAGGCAGCAATGCGGGAGCTAAAGAAGAGGAAAACTGGCAGCTGATGTTTCTAGATAAAGAATTCAAACGCTTGCTATGCATAGCATAACGTTGTGTGTCAAGTCTCAAGTTTCAGGTAGATGCAACAAAAAAGTGCTGGGATTTATCTATCAGCAGTCGCACCCAATTTCCCAGTGTCAGATTTTTGTTGGGTACATTCAAGGAGTTTTTCATTGTAAATGTTTACAGCAACCAGCAGTAATATTCTGGTGGGGAAGGGTTAAATCCTTTACCCGCATGGTGAATGTGTTGCGACCACAGGAAGTTTGGTTTGACAAATGGATTCCTGCTGAAAATTTGTTTATTCCTTGAAATGTGCAGTGATAAAACTGAAAATCTGGAAGTTTCGCAACAGACAAAGCTGTTCTCACCTTGAACATGCTGTGAAATCAGGCTCCTGTACCATCATGGATTGTGTACTTGTGTCATTTCATGTTTACCTATCAGCTTATCATGCATGTGCATTTTTTACC | |||||||||
gi|270482487|gb|GT865734.1|GT865734 CCYP9960.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GAACACAACAGAAATCGCACAGAAAACCCCAACTTGGAATCGTCTTCCTCCTCCTCTGCTCGCCATCCCCTTCCTCGCGCCCCCCAAATTCGCTCGCCGGGGTCACCTGAGATCACATAGAAAAATGGTGAAGGCTGTTGCTGTGCTTTCCGGCAGCGAGGGTGTCAAGGGCACCATCTTTTTCACCCAAGAGGGAGATGGTCCGACCACCGTGACAGGAAGTGTCTCTGGACTCAAGGAAGGGCTCCACGGGTTCCATGTGCACGCTCTTGGTGACACTACCAATGGCTGCATGTCAACTGGACCACACTTTAACCCCGCTGGTAAGGAGCATGGCGCACCAGAAGATGAAACTCGCCATGCTGGTGATCTTGGAAATGTGACGGCGGGAGTGGATGGTGTTGCTAACATCAATGTTGTTGACACCCAGATCCCCCTGACTGGACCGCATCGATCATTGGCCGTGCTGTTGTTGTCCATGGTGATCCTGATGATCTTGGCAAGGGTGGACATGAGCTTAGCAAGAGCACTGGGAATGCTGGTGCACGTGTTGCTTGTGGGATCATCGGGCTCCAGGGCTAGATGGGGTAATCGCTTGCCAACACCGTACAGATCTGGACACATTCGACATTCAGGATATGAACTTTATTGCCGCCATTTTAAATAAGCACCTGATCCATGATCGCTGATCAGTGTGCACCATTCACATCATTTCCTATGT | |||||||||
gi|270455607|gb|GT838000.1|GT838000 CCYO9981.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cDN TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): TCCCGACCCAAATCGACATCTTGAAGAAACTAGGCGACAGATAGCGAACCCTAGAAATTTTCAAGCGATCTTTCAATCGGCCATGACTGTAGACCAGAAATCCGTCTCGGCGGCGCCGTTGGAGATCCCGGCGCTTCAGCCAGGAAGAACACTTGGAGCAGAGGCAAATACCCGGAGTCATGTTTCCGTCGAATCAATAGGAAAAAGCGACCCCGTAAATCACGCGACGGGCCTAATTCAGTCTCTGAGACGATCAGGCGGTGGAAAGAAGTCAACCAACAGCTGGAGCATGATCCAGAGGGTGCAAAGAGGGCAAGGAAGCCACCTGCAAAGGGTTCAAAGAAGGGCTGCATGCAGGGGAAAGGGGGACCTGAGAACACGCGGTGCAAGTTCCGTGGTGTAAGGCAACGCACTTGGGGGAAGTGGGTCGCTGAAATTCGGGGAGCCAAA | |||||||||
gi|270386252|gb|GT765070.1|GT765070 CCXF5187.b1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CGCTCGCCGGGGTCACCTGAGATCACATAGAAAAATGGTGAAGGCTGTTTCTGTGCTTTCCGGCAGCGAGGGTGTCAAGGGCACCATCTTTTTCACCCAAGAAGGAGATGGTCCGACCACCGTGACAGGAAGTGTCTCTGGACTCAAGGAAGGGCTCCACGGGTTCCGTGTGCACGCTCTTGGTGACACCACCAATGGCTGCATGTCAACTGGACCACACTTTAACCCCGCTGGTAAGGAGCATGGCGCACCAGAAGATGAAACTCGCCATGCTGGTGATCTTGGAAATGTGACGGCTGGAGTGGATGGTGTTGCTAACATCAATGTTGTTGACACCCA | |||||||||
gi|270394636|gb|GT773895.1|GT773895 CCXF10346.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachy TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): TTCGATGACGAGTGGTTCCAAGAGGGCTACAATCCTTCAGAGATGAGAATTCAGAGTGAAGAAAACTATGATTGTGTTGATCTTGAAGAGGTCGGCAGAGGCAGTGATAGCAGTCACAGCACAGAGGTAAGGGAAGCTGAGGAAGCAAATCTGGAGCCTGACCGGTTCGTCAACGCATTCCGGTTGATAGCAACATGCAGCGATCTTGACTTGTCAGGACTATTCCACGAGCAGAAAACAAAGTTTGGCTCGCCGTATCCGGTGCAGGAAACACTGGCGATGATCACAGTTGCAGCCCAGGATGTGCGCTTGTCTGCAAAGAGAATGAGCAACTCCACGGTGAAACTTCAGGACATCAGATTACTATCAAGAAGCATGCTAGATCTCACTCTTTCCGCCGAGGTGATCGAGGTGACACCAGCACACTGCGTCGTTGAAGTGTCCAAGTCCACCGGCGATCTGAGAGCATACAAAAAGTTCTGCACAAGCCTGTGGAGATTGCTCAATGAGGGGGAGGAGCAGCGAGGCAGCTCTTCTGATTTGTAGGACAGCAAGTCTGCGTAGAGCACGATCAATTTGGAGAGAACAATATAGGGTAGGTCCCGAGCTAGCACAGGCAGCTAGGATGTTCAGATGGTGGTCGTTCCAGATTGTATCAAGCACCAAGTGCTCAATGATTGTAAATGCTACCCTGGTTAATCAGTAAAATCTCTCACCTTTCCATC | |||||||||
gi|270471766|gb|GT853243.1|GT853243 CCYP9398.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): AATCGCTCGCCGGGGTCACCTGAGATCACATAGAAAAATGGTGAAGGCTGTTGCTGTGCTTTCCGGCAGCGAGGGTGTCAAGGGCACCATCTTTTTCACCCAAGAGGGAGATGGTCCGACCACCGTGACAGGAAGTGTCTCTGGACTCAAGGAAGGGCTCCACGGGTTCCATGTGCACGCTCTTGGTGACACCACCAATGGCTGCATGTCAACTGGACCACACTTTAACCCCGCTGGTAAGGAGCATGGCGCACCAGAAGATGAAACTCGCCATGCTGGTGATCTTGGAAATGTGACGGCTGGAGTGGATGGTGTTGCTAACATCAATGTTGTTGACACCCAGATCCCCCTGACTGGACCGCATTCCATCATTGGCCGTGCTGTTGTTGTCCATGGTGATCCTGATGATCTTGGCAAGGGTGGACGTGAGCTTATCAAGAGCACTGGGAATGCTGG | |||||||||
gi|270480070|gb|GT861985.1|GT861985 CCYP14694.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): AACAGAAATCGCACAGAAAACCCCAACTCGGAATCGTCTTCCTCCTCCTCTGCTCGCCATCCCCTTCCTCGCGCCCCCCAAATACGCTCGCCGGGGTCACCTGAGATCACATAGAAAAATGGTGAAGGCTGTTGCTGTGCTTTCCGGCAGCGAGGGTGTCAAGGGCACCATCTTTTTCACCCAAGAGGGAGATGGTCCGACCACCGTGACAGGAAGTGTCTCTGGACTCAAGGAAGGGCTCCACGGGTTCCATGTGCACGCTCTTGGTGACACCACCAATGGCTGCATGTCAACTGGACCACACTTTAACCCCGCTGGTAAGGAGCATGGCGCACCAGAAGATGAAACTCGCCATGCTGGTGATCTTGGAAATGTGACGGCGGGAGTGGATGGTGTTGCTAACATCAATGTTGTTGACACCCAGATCCCCCTGACTGGACCGCACTCGATCATTGGCCGTGCTGTTGTTGTCCATGGTGATCCTGATGATCTTGGCAAGGGTGGACATGAGCTTATCAAGAGCACTGGGAATGCTGGTGCACGTGTTGCTTGTGGGATCATCGGGCTCCACGGCTAGATAGGGTAATCGCTTGCCACA | |||||||||
gi|270469862|gb|GT854171.1|GT854171 CCYP10267.b1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GGTCTTCTCTTCCCAACACAACAGAAATCGCACAGAAAACCCCAACTCGGAATCGTCTTCCTCCTCCTCTGCTCGCCATCCCCTTCCTCGCGCCCCCCAGATTCGCTCGCCGGGGTCACCTGAGATCACATAGAAAAATGGTGAAGGCTGTTGCTGTGCTTTCCGGCAGCGAGGGTGTCAAGGGCACCATCTTTTTCACCCAAGAGGGAGATGGTCCGACCACCGTGACAGGAAGTGTCTCTGGACTCAAGGAAGGGCTCCACGGGTTCCATGTGCACGCTCTTGGTGACACCACCAATGGCTGCATGTCAACTGGACCACACTTTAACCCCGCTGGTAAGGAGCATGGCGCACCAGAAGATGAAACTCGCCATGCTGGTGATCTTGGAAATGTGACGGCTGGAGTGGATGGTGTTGCTAACATCAATGTTGTTGACACCCAGATCCCCCTGACTGGACCGCATTCGATCATTGGCCGTGCTGTTGTTGTCCATGGTGATCCTGATGATCTTGGCAAGGGTGGACATGAGCTTAGCAAGAGCACTGGGAATGCTGGTGCACGTGTTGCTTGTGGGATCATCGGGCTCCAGGGCTAGATGGGGTAATCGCTTGCCAACACCGTACAGATCTGGGCACATTCGACATTCAGGATATGAACTTTATTGCCGCCATTTTAAATAAGCACCTGATCCATGATCGCTGATCAGTGTGCACCATTCACATCACTTCCTATGTGGCT | |||||||||
gi|270480071|gb|GT861986.1|GT861986 CCYP14694.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA c TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CCCCTTCCTCGCGCCCCCAGATTCGCTCGCCGGGGTCACCTGAGATCACATAGAAAAATGGTGAAGGCTGTTGCTGTGCTTTCCGGCAGCGAGGGTGTCAAGGGCACCATCTTTTTCACCCAAGAGGGAGATGGTCCGACCACCGTGACAGGAAGTGTCTCTGGACTCAAGGAAGGGCTCCACGGGTTCCATGTGCACGCTCTTGGTGACACCACCAATGGCTGCATGTCAACTGGACCACACTTTAACCCCGCTGGTAAGGAGCATGGCGCACCAGAAGATGAAACTCGCCATGCTGGTGATCTTGGAAATGTGACGGCAGGAGTGGATGGTGTTGCTAACATCAATGTTGTTGACACCCAGATCCCCCTGACTGGACCGCATTCGATCATTGGCCGTGCTGTTGTTGTCCATGGTGATCCTGATGATCTTGGCAAGGGTGGACATGAGCTTAGCAAGAGCACTGGGAATGCTGGTGCACGTGTTGCTTGTGGGATCATCGGGCTCCAGGGCTAGATGGGGTAATCGCTTGCCAACACCGTACAGATCTGGGCACATTCGACATTCAGGATATGAACTTTATTGCCGCCATTTTAAATAAGCACCTGATCCATGATCGCTGATCAGTGTGCACCATTCACATCATTTCCTATGTGGCTGTTGGAACATTTGCATCACCATCATTTGCCTTTTGAGTGACTGTTCTGTCAAGTGTGTG | |||||||||
gi|78011884|gb|DV480272.1|DV480272 5334_G09_M18Z_067 Brachypodium distachyon stem plus sheath EST library Brachypodium distachyo TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CCATTCGTCCGGGTCAGATCCTATCGAGCACTGCCCATCTCCACTCCATTTTAACCTTCCCCCCGAGACCTCCTCCGCCGCGACCTGAGAGCACACTCACGCGGGCACCATGTGGCGCCGCCTCCAAACCC | |||||||||
gi|78007203|gb|DV475591.1|DV475591 5494_F08_L16ZE5_054 Brachypodium distachyon developing spike EST library Brachypodium distach TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CCCCTAAAAGGAGAAACGCTAAAATAAACTACTAGGAAACATTTCTAGCTCAGACTTCTCTCTACCAGACAGTCTCCTGGTCTTCTTCAACTTCCAGCAGGTACCAAGGGTTACAGGTACTTCCTAGCGGAAAAGAGTACCTCCTCAGTCCACAACCGCATCACTTAGCATGCAGAATTACAGATGGACTGACTAGTAATTCATAAAAGGATTTAATTAATAGCCGTTATGGAGTGCAATCTAGCCATCCACATCATTATGGTGATCAGCTACATCCTGGCAACACCTTGCAGTTTGGCCAACACACACCATCAGCAGAGCAATCTAGGGGAGTCCAGTGGGTGTATCCGAATATATTTCAGGATGATCAAGCACCTTATGGGAGGCGGACATCTTGAATTCTGGAACAAGAGGTTACGATTGCAGGTTGTAGATCAGATGTACAGAAGAGTCTGGCTCCAGGTCCAGGGTGTATTAGCTTCATCTATCTGAGTATCTGACATCAGAGGCGGCCTGAGAATGCATGCAGGAACTAACAGGAATGTTGTCACGACATTGATGTCTGATCCTTGACGAGAACTCGATAGCTTTCTTGAACTTTGAATCTGCTAACCCAGTTTTGTTTCCCAGTCGTGACTTGGACACTNCACAGCTTTCCTGAAGATGCCAAACTATGTGAATATGTCGTTTGACATCTCTT | |||||||||
gi|270453728|gb|GT836139.1|GT836139 CCYO16650.b1 CCYO Brachypodium distachyon flower + flower drought Brachypodium distachyon cD TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GCCAACACAACAGAAATCGCACAGAAAACCCCAACTCGGAATCGTCTTCCTCCTCCTCTGCTCGCCATCCCCTTCCTCGCGCCCCCCAGATTCGCTCGCCGGGGTCACCTGAGATCACATAGAAAAATGGTGGAGGCTGTTGCTGTGCTTTCCGGCAGCGAGGGTGTCAAGGGCACCATCTTTTTCACCCAAGAGGGAGATGGTCCGACCACCGTGACAGGAAGTGTCTCTGGACTCAAGGAAGGGCTCCACGGGTTCCATGTGCACGCTCTTGGTGACACCACCAATGGCTGCATGTCAACTGGATCACACTTTAACCCCGCTGGTAAGGAGCATGGCGCACCAGAAGATGAAACTCGCCATGCTGGTGATCTTGGAAATGTGACGGCTGGAGTGGATGGTGTTGCTAACATCAATGTTGTTGACACCCAGATCCCCCTGACTGGACTGCATTCGATCATTGGCCGTGCTGTTGTTGTCCATGGTGATCCTGATGATCTTGGCAAGGGTGGACATGAGCTTAGCAAGAGCACTGGGAATGCTGGTGCACGTGTTGCTTGTGGGATCATCGGGCTCCAGGGCTAGATGGGGTAATCGCTTGCCAACACCGTACAGATCTGGGCACATTCGACATTCAGATATGAACTTTATTGCCGCCATTTTAAATAAGCACCTGATCCATGATCGCTGATCAGTGTGCACCATTCACAT | |||||||||
gi|78007384|gb|DV475772.1|DV475772 5496_G09_M18ZE5_067 Brachypodium distachyon developing spike EST library Brachypodium distach TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCGCTCTCACAGAAGAAGAAAAAACAGAGACAACTCACTCTTCCCTCTCCCTCCTCCTGCTTCCGTCTCTACGGGGGGACGACCTGAGAGCACGGGCGACGATGGCCGGGACGGCGAACGGCGGCGCGAAGGCGGGGTGCTGCGGGGCGGCGAAGGGGCCCGGGTACGCCACGCCCTTGGAGGCCATGGAGAAGGGCCCGCGCGAGGGGCTCCTCTACGTCACCTGTGTCTACAATGGTACTGGAATTGACAAGCCGGATTACCTGGCTACGGTAGACGTGGATCCAAATTCTGCTACATACTCCCAGGTGATCCACAGGCTCCCGGCCACCCACATTGGTGATGAACTGCATCATTCAGGCTGGAACGCTTGCAGCTCTTGCCATGGCGATGCGTCCACCAGCCGGCGATTCTTGATTCTTCCGTCCTTGCTGTCAGGTCGCGTGTATGTAGTTGACACTGCAAAGGATCCGAGGGCACCTGCCTTGCATAAGGTTGTCCAGGCTGAGGACATTGCTGAGAAGACTGGGCTTGGTTTCCCTCACACATCTCATTGCCTTGCATCTGGTGATATTATGATTTCTTGCCTGGGGGACAAGGAGGGGAATGCTGCTGGCAATGGCTTTCTCCTGTTGGATTCAGAATTTAATGTCAAAGGACGATGGGAAAAGCCAGGCCACAGCCCCTTGTTTGGCTATGATTTCTGGTACCAGCCTCGTCACAAAACGATGATTAGTTCATCGTGGGGAGCCCCTGCGGCGTTCANGACAGGTTTTGATCTTCAGCATGTCCAGGATGGTCTATATGGAAGGCACCTGCATGTATACGACTGG | |||||||||