miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGTGTTCTCAGGTCGCCCCTG
species: Cynara scolymus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|211751100|gb|GE590949.1|GE590949 CCPW14948.b1_H18.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CC 

TGTGTTCTCAGGTCGCCCCTG
|||| ||||||. |.||||||
ACACTAGAGTCTTGTGGGGAC

EST sequence (targeted fragment marked with yellow):
GTGCAGGGGTGTTCTGAGATCACATTCAAAATGGTGAAGGCAGTTGCGGTTCTTAGCAGCAGTGAGGGTGTCAGTGGCACCATCCTATTCAGTCAAGAGGCAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTCAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGACCTCACTACAATCCCCATGGAAAAGAGCATGGCGCTCCTGATGATGAAGTTCGCCATGCTGGTGATCTTGGGAATGTCACAGTAGGCGAAGATGGTTCTGCAAAGTTCACCATTGTTGATAAGCAGATTCCGCTAATTGGATCACAATCCATTGTTGGAAGGGCTGTAGTTGTTCATGCAGATCCTGATGATCTTGGAAAGGGAGGCCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGAAGAGTTGCATGTGGTATCATTGGATTGCAGGGTTGAATTCTGTGCTCATCTCTCTTCCATATTGCCAGGGAATACTGAGGCTTGTTTTCTTGAAAATCTATATGTATCCCAAAGCTATGGTTGTGTTTGTACTGCGTCCTTTAATAAACTATTCCCTGTGCTTAGCTGAG


gi|211764325|gb|GE599954.1|GE599954 CCPW8322.b2_C18.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCP 

TGTGTTCTCAGGTCGCCCCTG
|||| ||||||. |.||||||
ACACTAGAGTCTTGTGGGGAC

EST sequence (targeted fragment marked with yellow):
GGGGTGCAGGGGTGTTCTGAGATCACATTCAAAATGGTGAAGGCAGTTGCGGTTCTTAGCAGCAGTGAGGGTGTCAGTGGCACCATCCTATTCAGTCAAGAGGCAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTCAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGACCTCACTACAATCCCCATGGAAAAGAGCATGGCGCTCCTGATGATGAAGTTCGCCATGCTGGTGATCTTGGGAATGTCACAGTAGGCGAAGATGGTTCTGCAAAGTTCACCATTGTTGATAAGCAGATTCCGCTAATTGGATCACAATCCATTGTTGGAAGGGCTGTAGTTGTTCATGCAGATCCTGATGATCTTGGAAAGGGAGGCCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGAAGAGTTGCATGTGGTATCATTGGATTGCAGGGTTGAATTCTGTGCTCATCTCTCTTCCATATTGCCAGGGAATACTGAGGCTTGTTTTCTTGAAAATCTATATGTATCCCAAAGCTATGGTTGTGTTTGTACTGCGTCCTTTAATAAACTATTCCCTGTGCTTAGCTGAGTACTCCTTTTGAATTATGAGACATCTNTTATCCCTTGATGATACAACTTTTG


gi|211748494|gb|GE587966.1|GE587966 CCPW12151.b1_M14.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CC 

TGTGTTCTCAGGTCGCCCCTG
|||| ||||||. |.||||||
ACACTAGAGTCTTGTGGGGAC

EST sequence (targeted fragment marked with yellow):
CGGGACACACAGAGACTCGTTGCAGGGGTGTTCTGAGATCACATTAAAAAATGGTGAAGGCAGTTGCGGTTCTTAGCAGCAGTGAGGGTGTCAGTGGCACCATCCTATTCAGTCAAGAGGCAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTCAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGACCTCACTACAATCCCCATGGAAAAGAGCATGGCGCTCCTGATGATGAAGTTCGCCATGCTGGTGATCTTGGGAATGTCACAGGAGGCGAAGATGGTTCTGCAAAGGGGGCGATTGTTGATAAGCAGATTCCGCTAATTGGATCACAATCCATTGTTGGAAGGGCTGTAGTTGTTCATGCAGATCCTGATGATCTTGGAAAGGGAGGCCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGAAGGGTTGCATGTGGTATCATTGGATTGGCAGGGTTGATTTCTGTGCTCATCTCTCTTCCATATTGCCAGGGAATACTGAGGCTTGTTTTCTTGAAAATCTATATGAATCCCAAAGCTATGGTTGTGTTTGTACTGCGTCCTTTAATAAACTATTCCCTGGGCTTAGCTGAATACTCCTTTGGAA


gi|211754943|gb|GE592589.1|GE592589 CCPW16473.b1_B16.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CC 

TGTGTTCTCAGGTCGCCCCTG
|||| ||||||| |.|||||
ACACTAGAGTCCTGTGGGGAA

EST sequence (targeted fragment marked with yellow):
TCTCTCCTCTCTCTCACACCACACAGAGACTCGTTGCAAGGGGTGTCCTGAGATCACATTAAAAAATGGTGAAGGCAGTTGCGGTTCTTAGCAGCAGTGAGGGTGTCAGTGGCACCATCCTATTCAGTCAAGAGGCAGAAGGTGCTCCCACTACTGTTACTGGAAACCTTTCTGGCCTCAAACCTGGACCTCATGGTTTCCATGTTCATGCACTTGGTGACACAACCAATGGATGCATGTCAACTGGACCTCACTACAATCCCCATGGAAAAGAGCATGGCGCTCCTGATGATGAAGTTCGCCATGCTGGTGATCTTGGGAATGTCACAGTAGGCGAAGATGGTTCTGCAAAGTTCACCATTGTTGATAAGCAGATTCCGCTAATTGGATCACAATCCATTGTTGGAAGGGCTGTAGTTGTTCATGCAGATCCTGATGATCTTGGAAAGGGAGGCCATGAGCTGAGCAAAAGCACTGGAAATGCTGGTGGAAGAGTTGCATGTGGTATCATTGGATTGCAGGGTTGATTTCTGTGCTCATCTCTCTTCCATATTGCCAGGGAATACTGAGGCTTGTTTTCTTGAAAATCTATATGTATCCCAAAGCTATGGTTGTGTTTGTACTGCGTCCTTTAATAAACTATTCCCTGTGCTTAGCTGAGTACTCCTTTTGAATTATGAGACATCTTTTATCCCTTGATGAT