| mature miRNA: TGTGTTCTCAGGTCGCCCCTG species: Malus domestica database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|117949343|gb|EG999272.1|EG999272 050711ABEA005132CT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CTCGAAGAGAACAAGTGTTCCAGTATATGCCAAAGCGGTAGAGGGGTTCTGCAGGAGTGACCTGAGATCACATATGGCGTTATGTGTTGCGCTTGATGTGTTCTCAGGTCGCCCCTGCGGTACCTTCTCTACCACATGAATGCACTGCTATTGATCTGAATGGACACTCATGACGGACCTGAGGTGCTACATCGAAAGGTGAGAAAGTTCTATCATGTTTCGGTGTATTGAAAAATGTAAGAAACATTACAAACTTTACTCTCGACTACATGCATCGATTGTTCTACCACTACTGTAACAGAAATTTGAATCTCATACTGTAAGTACGTGTTGGTGCTCACAAAAGAAAGTCAAATCTATTCCTACCTGGATAAATCAGTGACTAAATCAATATGTCCTTACAGCAGACTTGATGGCTAGTAGCTCTCCTTCTCCAACTTTCTGAGGATAAAACATAAGTTATCTTGGTAGACTGATGATGTTGCTTATCCAGATTGAATATTCATACTCTGAGCATTATTTGACTGTCATTTGATCTTTATACTGCCATGTTACTATTATAGTTCATGCCAGAGAATACAGTATGAATTGACCAGCAGTCTGTCGTAATCCAGTCAAGCATATTGTTCAACTATACAATTGAGAAATTTGAGAGTGAAACTACAGTAATAACTCTATTACTCTAATTATTGCACACAGTTAGAGTTTGCTTATTTATAATTACATCTTAATACGTTCTTACTCTTCAGGGGTGTTATTACTGTAGAGGGTCACCTGAGTTATACAAATGCATAGAGTCACCCTATGATATGAGTTTAATTGGATATGTTATTACTATTGCAGCAGTTTGCTATTATCCCCTATGTAATCAATAATCAAGTATACAGTCTACAATTTATCAACAGTATAACTCATCATCTAGCTCTTTTCCACTCTCCCATGTAAATGGGTCTCGAGTTTGTTTATTGTAATTCATTGATTGAAATGTTGATAGTTATGTCTGAAAATTTGAGAAGAAATTCTCTCTGAGTCTCTTCTAAAAAAAATTAGCTCAAAAAAAAAAAA | |||||||||
gi|91037732|gb|EB148150.1|EB148150 011022ABEA003570HT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): TTCCACAGGAGTGACCTGAGATCACATGTAGCATTTATGTATTGCACTTGATGTGTTCTCAGGTCGCCCCTGCGGTACCTTCTCTACCATATCATTGCACTGCTGTAGATTTGAATGGACATTGACAACGGACCCGAAGTGTTACATAGAAAGGTCTCATGGCACTACATTGTTTCAGTTCCCACTTCTCTTCTCTTCCTAGTAATCCAGGAACCTTTTCTGCGACATTATGGACATCCAGCCAGAAAACCCAACAGCTCGAGGCAACATTCCAATCAGACGCCGGTTCCATGATTTGGCGAGAACCCATTTGTTCGTATTTTCGTCATCAGCATCTGTCTTCTTCAATTCCTTGCTCTTCATTTTGCGACATTAATCAGTTGTAGCTTTTTTGCCGCTTGACTTATGATTCATCTTGCTTTATATATAGATTATTTGTATTTTGAAGAAAAA | |||||||||
gi|226787194|gb|GO542052.1|GO542052 Mdfrjg3507F09.g1 Apple_EST_Mdfrjg Malus x domestica cDNA 5' similar to gb|AAD01605.1| copper TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CGAATTCCGTTGCTGTCGCCGTTGCTGTCGAATCTATCAAGCGCCGTTGTATTCTCCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTCTCAAAGGGGTGTCCTGAGATCACATCAGTTCTCAGTGGTTGCTCAATTTTGATAAAAATAATTTGATCACGTTGAAATCATGGTGAAGGGTGTTGCTGTTCTCGGCTCCAGTGAGGGTGTTAAAGGAACCATCAACTTCGTCCAGGAGGGAGATGGTCCAACTACTGTGACTGGATGTATCTCTGGCCTCAAGCCTGGACTTCATGGTTTCCACGTCCATGCTTTCGGAGACACAACAAACGGTTGCTTGTCAACTGGGCCACACTTCAATCCTAATGGAAAAGAGCATGGTGCCCCTGAAGATGAGGATCGTCATGCTGGCGACCTTGGAAATGTCACTGTTGGGGATGATGGAACTGCAACCTTCACTCTTATTGACAAGCAGATACCTCTAACCGGACCACACTCTGTCATTGGTAGGGCAGTTGTTGTCCATGGCGACCCAGATGACCTGGGCAAGGGTGGACATGAGCTTAGCAAATCCACTGGAAATGCTGGTGGCAGGGTAGCT | |||||||||
gi|226773201|gb|GO529431.1|GO529431 Mdltx7525B23.g1 Apple_EST_Mdltx Malus x domestica cDNA 5', mRNA sequence TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): CGAATTCCGTTGCTGTCGATTTGGATACTGCAGAAGATGTTCTTCTAGTGTTCTTATAAATACAAATTATCTACATTTAAAGCAAGATGAATCATCAGTCAAGCGGCAAAGAAGCTAGAACTGATTAATGTCGCAAAATGAAGAGCAAAGAATTGAAGAAGACAGATGCTGATGTCGGAAATACAAACAAATGGGTTCTGCCCAAATCAGGGAACTCGCGTCCGATTGGAATGTTGCCTCGAGCTGTTGGGTTTTCTGGCTGCCTTCCTGTTCTGGATGTCAATAATGTCCCAGAAAAGGTTCCTGGATTACTAGGAAGAAAAGAGAAGTGGAAACTGAAACAATGTAGTGCCATGAGACCTATAAAACTCAATTTTGGTCAAAATAATGTCCAAGCAGTCGAGAGTGAGTAAGTAATGTTTCTTACATTACATTTCAATGCACCGAAACATGTTAGAACTTTCTCACCTTTCGATGTAGCACTTCGTTCCGTTATCAATGTCCATTCAAATCTACAGCAGTGCAATGATATGATAAAGAAGATACCGCAGGGGCAACCTGAGAACACATGAAGCGCAATGCACAAGCGTTACATGTGATCTCAGGTTACTCATGGAACCTCTCTACCGCTTTTGCTTATCTCTGTA | |||||||||
gi|91037712|gb|EB148130.1|EB148130 011022ABEA003549HT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): TTCCACAGGAGTGACCTGAGATCACATGTAGCATTTATGTATTGCACTTGATGTGTTCTCAGGTCGCCCCTGCGGTACCTTCTCTACCATATCATTGCACTGCTGTAGATTTGAATGGACATTGACAACGGACCCGAAGTGTTACATAGAAAGGTCTCATGGCACTACATTGTTTCAGTTCCCACTTCTCTTCTCTTCCTAGTAATCCAGGAACCTTTTCTGCGACATTATGGACATCCAGCCAGAAAACCCAACAGCTCGAGGCAACATTCCAATCAGACGCCGGTTCCATGATTTGGCGAGAACCCATTTGTTCGTATTTTCGTCATCAGCATCTGTCTTCTTCAATTCCTTGCTCTTCATTTTGCGACATTAATCAGTTGTAGCTTTTTTGCCGCTTGACTTATGATTCATCTTGCTTTATATATAGATTATTTGTATTTTGAAGAAAAAAAAAAAA | |||||||||
gi|117949345|gb|EG999274.1|EG999274 050712ABEA003549CT (ABEA) Royal Gala seedling leaves infected with Venturia inaequalis Malus TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GTTCCACAGGAGTGACCTGAGATCACATGTAGCATTTATGTATTGCACTTGATGTGTTCTCAGGTCGCCCCTGCGGTACCTTCTCTACCATATCATTGCACTGCTGTAGATTTGAATGGACATTGACAACGGACCCGAAGTGTTACATAGAAAGGTCTCATGGCACTACATTGTTTCAGTTCCCACTTCTCTTCTCTTCCTAGTAATCCAGGAACCTTTTCTGCGACATTATGGACATCCAGCCAGAAAACCCAACAGCTCGAGGCAACATTCCAATCAGACGCCGGTTCCATGATTTGGCGAGAACCCATTTGTTCGTATTTTCGTCATCAGCATCTGTCTTCTTCAATTCCTTGCTCTTCATTTTGCGACATTAATCAGTTGTAGCTTTTTTGCCGCTTGACTTATGATTCATCTTGCTTTATATATAGATTATTTGTATTTTGAAGAAAAAAAAAAAA | |||||||||