| mature miRNA: TGTGTTCTCAGGTCGCCCCTG species: Nicotiana benthamiana database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|39885241|gb|CK298152.1|CK298152 EST760866 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): ATATACATCAGCTACAAAAGAGGAAACTTAATTATTATATCAAGAAAGATCCAATTGGGGCTACCTGAAAACACAACAAATATGGTTGCAAGGATGAATATTGCAAGAATTGCACTAGTTTTAGTGGCAATTTTGGTGGCATTGCCGGGGAAAATAACAGCAGTTGATCATGTGGTTGGCGATAATAGTGGTTGGGGAATTCCTTCAGGTGGCCCTTCAACTTATGTCAATTGGGCTTCACAACGTACCTTCAGAGTTGGTGATACTTTAGTGTTCAACTTTGCAACTGGAGCACATGACGTAGCCAAAGTCACAAAGAGTGCATTTGATTCTTGCAGCTCCACAGGTCCAGTTACTCTTATAACTGTTGGACCAGCCAATATTACTCTCAATTCCACAGGAACAGAATATTTCATTTGCACTTTTGGCCAACATTGTTCTGCTGGCCAAAAACTAGCCATCAATGTTACAGCATCTTCCACTTCTAGCCCTAGTCCTGCACCCTCCCCTACTACCACCCCTGCTCCATCACCCGTCCCAACCCCGACCCCTACCCCTACGCCTACTCCTGCACCGTCTGCACCTTCCCCGACCCCAATGTCAACGGCAACGCCAACGCCAAGTCCATCGCCATCAATGGGACCATCTGCACCAACTCCTACTCCTAGTGGCGGTGCAGGAACTTCACCATCGTCCTCTCCAACCTCTAGCCCGATCACACCGGGGACTACTCCTTCACCCGAGACACCTCCCGAAGGACTAATTCCTCCACCGGCTCCTAGCTCTGCCCCGAGGAACGTCTTTGCTCCTGCATTGATCATGTTCATGTCTATTGCCATTAGTATCTTGTGGTAGATTCTTGTATTTATATATATATCGGACTTTTCTAGCACGGAGGAGC | |||||||||
gi|39867975|gb|CK289462.1|CK289462 EST752184 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GGTGAAAGTGTTCAACAGGGGCAACCTGAGATCACATATTGTCATTTTTCTTTAGTTGTTGAGTCTGGTTCAATATCTCACTATGTGTTCTCAGGTCGCCCCTGTCGAATTATTTTTCACCGAATAAGATGGTTTATCATGTTTGATATATAAGAAGATGTTTTATCGTGTTTGAGAACTTCATCCGGATGGGCTTTCTCACAATACCCATATCAAGCCCGGGTAAAGGAGAAGTGACATTGTGGTAGGCTGATAGCGAGCGTAAAACTAGTCAACTCATAGTGAATCTTCAAAATAGAGATACATGAACAACGACGATTCATATACTCGATCCTAACTTTTAGTGATGGTTCCAACTTGCTTGAAAGTTTTGACCAAGGTAAGCTTTAATATTCCACGTAGCTAATAACCGACTACGACGTATAGTTACAACATTCACGCAGGGTCCAGGGAACCTAGGTTAGGGGGTCGTTAGACCGTAGCTTGCTGCTGAAAAACGTTGCTAGGCTAGCGCGGCTCGCTTCGCTCTTCAAGCTCCGCCCCCCCTCCTCCTGCTAATGCTAGTGCAACTTTGCAACACCCTTATATGTGATGTAAAGATAAAACTAAATAATGTAATGATACTTATTTATGCAGAATGCTAGTAATAGATTTCAGAAATAATACAATTATTAGTTCTATATAATTTAAGATTTTTTCATGATTTCACTAGCTCAATAAAGCAAGGAAGTGTGTTTTCATACATAATATTACTTTAAGGAAACATGAGATAACTCTCTATAGGAAGGAAATCAAATAGCCATTTCAAGACTATTACAAAAAGAAGCTGCACTTAGGACATTAGAGATCAAGGCCCAATGCAACAAAATGCCAACATCTTCTTTTTCCTCTGCACCTCATAAAAGAAAAATAGGTAAGAGCTCAGGGTAGTTTAGAGGCGGATCCAGGATTTTATATTAAATAGTGCACATGAATAGTGACTACGAAACTTTGTGTGTGTATGAGTA | |||||||||
gi|39878897|gb|CK294973.1|CK294973 EST757687 Nicotiana benthamiana mixed tissue cDNA library, normalized, full-length Nicotiana TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GTTATATACATCAGCTAGTCAGCTACATAACAAGAAAGATCCAATTGGGGCTACCTGAAAACACAAAAAATATGGTTACAAGAATGAATATTGCAAGAATTGCACTAGTATTAGTTGCAACTTTGGTGGCGTTGCCGGGAAAAATAACAGCAGTTGATCATGTGGTTGGCGATAGTAATGGTTGGGGAATTCCTTCAGGTGGACCTTCAACTTATGCTAATTGGGCTTCACCACGTACCTTTAGAGTTGGTGATACTTTAGGTATGTATTATTACGTATTCCACACCTCTTTCTCTTACACAATTAGTGCATTATTTGAGATAGTTGAAAATTTTGGATCAATAATAATTCCCCATAAGTCATAAGTAGAACGTTTATTATAGTTACTGTTATACCTTAGACGTCAATTAGTGTTTAGCAATCATACACCAATATGTCTGCATACCGAAATAAGTAGATGCAGAATATTAACTATTTGAAAGGTAACTAAAATTAGCAGCCAAACATTGATTATTATCACTTGATAGGCCTTTCAATTTACTAATTGATTTGAAAGAGCTCGTCACTATAATTTTCTTTTTCTAGCTAAAAGATCAGAACCAGTTAGACTTAGGTGCTATGAAATTTTCAGCAAACTTGAATTTTGTAGAAAGAAAGATTAACAAAGATAAAAAAATCAGGAGTCTTTTAATCCTGTCAAAGATATGTATACTGGTAGATATATACAGAACTTCTATGCTTTTTAGTTCTATGTTTTAAATCATTGGACTTTATTGGAAACAGCCTCTCTGCCCTTTCGGGTAGGGGTAAGGCTTGTCTACATATTACCCTCCCTAGACTCCACCTGGTGGGAGTATACTGGGTAGTTTGTGTTGTTTTTAATCATTGGACTATGAGGATTAAGCTTTAATGTGATATACAACAACAATCGATTATATTTCACAAAGTGGGATCTGGGGAAG | |||||||||
gi|227574624|gb|GO609158.1|GO609158 NBLEL3_JP_007_D12_25JUN2004_090 NBLEL3 Nicotiana benthamiana cDNA, mRNA sequence TGTGTTCTCAGGTCGCCCCTG EST sequence (targeted fragment marked with yellow): GAGTTTTGAAGGGGCTCCAAAAAAAGTCAGGGAACGATCCGCTGATCAGGGACAATCAAACAGTAAGGTTTCGAGTTTGTTTGGCGGAACTCAAGATAAATGTGTTGCTTGCAAGAAAACTGTCTACCCCCTGGAAAAGGTAGCAGTGGATGGAACTTCATACCACAGGGCTTGTTTCAAATGTAGCCATGGGGGATGTGTGATCAGCACATCAAACTATGTAGCTCATGAACATAAGCTATACTGTAGGCACCATCACACTCAACTCTTCAAGGAGAGAGGTAACTTCAGCCAGATGGAAGACCATGACAAAATTAAAGGGGTGACTGAGAACACAAAAGCATAGTCTTGCCTTGAACATTTTCATGTTCACTTGAGTTTGTAATAATCGGCTTTCAAGTGAGGGCTGGACCAGTTTGTT | |||||||||