| mature miRNA: TGTTCTTGACGTCTGGACCAC species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|67487620|gb|DR089288.1|DR089288 RTAL1_7_F02.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone RTAL1_7_F02_A029 5', mRN TGTTCTTGACGTCTGGACCAC EST sequence (targeted fragment marked with yellow): GAAAGAGCCCACTAAGTAAGAATCGATGCACGCACAAGCACAGGAGGGTGGTGGATGAGAGACGTAAGCGATACCAACTCGGGAAAGCTCCATATCAACCACTGAGAGATGATGGATATCAAGTACATAGGGAATCAAAGCGAGGACGGGGGTGAGGAGGGACCCAATTCATTTTTCTCCCGCAGACCTTCTTTGCGTTCATTTCTCATACCTGTTATCATATTCAACCTCAGTATCGACCGTGATCTTGACGTCAAGAGCACCGTTATTGTGATCAGGGACCACATGCCGGTCATCGTACCCATTTTCACCCTTTGAATCAAGAACGCTGCTCTTGCCGTCGCTGTCAACTTTGACACTCTGCTTGGCAATGTCACCGATGGTGTACGTCTGGTTGGGGTGTGGGTTGATGTTGAGAACGGAGTTGGCGGTGTGAGCGGGGTTAGAGCGGGTGGCGCGGGAGCCACTCGCAGAAGAATGGGATCCAGAGTAGGATCCAGTGAAAGATCCACCGTGAACGAGCGACCCACGGACGGAGAGGACGATGCGCATGGTCATGGTCGTGGTAAGAACGGCAGCCATGCTTGTGACAATGGTCCTGACGGCGTCATCGGAGCCAGTCGGCTTGATAATGAACCAGAACAAGACGTTGGTGA | |||||||||
gi|67487542|gb|DR089211.1|DR089211 RTAL1_7_F02.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone RTAL1_7_F02_A029 3', mRN TGTTCTTGACGTCTGGACCAC EST sequence (targeted fragment marked with yellow): CTATCCTGCTCGCCTGCTGCTCCGCGGCCCATGTGTTTAGGATCCGTGCTATCTTTGACAAGGACCGGACCGTCTTTGCAGTCATGGGTGTTCTCTGGGCGGTTCAATTCGTTGTCACCGCCGTTTGCTGTGCATTCTACTTTTCCGTCCCCTTGTTAGAAGGTCAGGGATGCATTGCAGGGCCAAAGCACACCTGGGTAGGAATTTACTGGGTCGTACCAACTCTGCTCTATACTGCTTCCTTTGGTCTCGCCCTTCTCCGCTCGATCAAGTCGCTCGAAGTCAAGCAGATGAATCTCTGGAAGTTGATGCTCCGTGATGGTCTCAACCTCTACGGCTCCATCTGGATCGTCAACATCACCAACGTCTTGTTCTGGTTCATTATCAAGCCGACTGGCTCCGATGACGCCGTCAGGACCATTGTCACAAGCATGGCTGCCGTTCTTACCACGACCATGACCATGCGCATCGTCCTCTCCGTCCGTGGGTCGCTCGTTCACGGTGGATCTTTCACTGGATCCTACTCTGGATCCCATTCTTCTGCGAGTGGCTCCCGCGCCACCCGCTCTAACCCCGCTCACACCGCCAACTCCGTTCTCAACATCAACCCACACCCCAACCAGACGTACACCATCGGTGACATTGCCAAGCAGAGTGTCAAAGTTGACAGCGACGGCAAGAGCAGCGTTCTTGATTCAAAGGGTGAAAATGGGTACGATGACCGGCATGTGGTCCCTGATCACAATAACGGTGCTCTTGACGTCAAGATCACGGTCGATACTGAGGTTGAATATGATAACAGGTATGAGAAATGAACGCAAAG | |||||||||
gi|34491874|gb|CF474502.1|CF474502 RTWW2_9_F08.b1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_9_F08_A TGTTCTTGACGTCTGGACCAC EST sequence (targeted fragment marked with yellow): AACTGGGACAAGACGATAGATATATATAATTTCCTATATGTCAAAGGAAAGGGACCGCTAATTAAAAAACGATGCACGCACAAGCACAGGAGGGTGGTGGACGAAAAACGTAAGCGATACCAACTGGGGAAAGCTGTATATCAACCACCGAGAGATGATGGATATCAAGTACATAGGGAATCCAAGCGAGGACGGGGGTAAGGAGGGAACCCAATTCAATTGTCTCCTGCAAACCCTTCTTTTCGTTCATTTCTCATACCTGTTATCGTATTCGACCTCAGTATCGACCGTGATCTTGACGTCAAGAGCACCATTGGTATCAGGGACGACATGCCGGTCATCGTACCCATTTTCACCCTTGGAGTCAAAAACGCTGCTCTTGCCGTCGCTGTCAACTTTGACGCTCTGCTTGGCAATGTCGCCAATGGTGTACGTCTGGTTA | |||||||||
gi|49447562|gb|CO366245.1|CO366245 RTK1_26_E11.g1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_26_E11_A029 5', mRNA se TGTTCTTGACGTCTGGACCAC EST sequence (targeted fragment marked with yellow): TCTTCGCCCGTCGTCATGTTCTATGGTTTACTTCCGTCTGCTCTTCAGTTTCTCATCACTTCCTATCTGTGGAAGGAACAGTACACACCGTCGCCGGACAATTCCCTGACCTTTGAACTCCGTCACGAACACGCGGTTACGAACGGTTCCCTCCTCGTCTTCTCTGATGTCCCCAAATTCCGACGGCTTTCGGGTGAAGATGATCGTTTACAGTACTCCGTAAAGACCAAGGCGACCCAGAGCCATGTCTTCACGCAGTTTCTCAATTCTTGGGATGAGGTCGAGGTACCAGGCCCGAATGTGACGGATCGGGAGACGTTGCACGCACTGGCTATGATGACCAACAACGCGTACCACGATGGCTCGGATAAAAAGGGGTGGTATGATTTGGGTACGGACTGGAACTCGGTGCGTTCACGAGGACGTCGTGGTTGATATACCCAATGACTTTGATTCTCCAGTCGTACCCGTTCGGTTGGGAGCCCGACGCGGATGGATTTAGGGGTCACGTCTTTGTGTCAACGGACAACAGCACCGTTGTCGTCGCCATCAAAGGAACTTCGGCTTTCTGGCTCGTCGGGGACGGTGGTCCAACCGTCAAGAAGGACAAACTGAACGATAACCTTCTCTTCTCGTGCTGCTGCGCCAAGGTCGGACCTACCTGGACGCCCGTGTGCGACTGTCATTCTGGGGGGTACACTTGTGACCAAGGGTGTCTGGAGAGGAGTCTCGTCCAGGATTCGTTGTTTTATCCTGTCGGGGTGAACCTCTATAACAACGTCAGCTATCTATACCCGGACGCGAAAATTTGGAT | |||||||||
gi|34491960|gb|CF474588.1|CF474588 RTWW2_9_F08.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_9_F08_A TGTTCTTGACGTCTGGACCAC EST sequence (targeted fragment marked with yellow): TGCTTCCTTCGGTCTCGTCCTTCTCCGCTCGATCAAGTCGCTCGAAGTCAAGCAGATGAATCTCTGGAAGTTGATGCTCCGTGATGGTCTCAACCTCTATGGCTCCATCTGGATCGTCAACATCACCAACGTCTTGTTCTGGTTCATCATCAAGCCGACCGGCACCGATGACGCCGTCAGGACCATTGTCACAAGCATGGCTGCTGTTCTTACTACGACCATGACCATGCGCATCATCCTCTCCGTTCGTGGGTCTCTCGCTCACGGCGGATCTTTCACTGGATCCTACTCTGGATCGCATTCCTCTGCGAGTGGCTCCCGTGCCACCCGCTCTAACCCCGCTCAGACCGCCAACTCTGTTCTCAACATCAACCCACACCCTAACCAGACGTACACCATTGGCGACATTGCCAAGCAGAGCGTCAAAGTTGACAGCGACGGCAAGAGCAGCGTTCTTGACTCCAAGGGTGAAAATGGGTACGATGACCGGCATGTCGTCCCTGATACCAATGGTGCTCTTGACGTCAAGATCACGGTCGATACTGAGGTCGAATACGATAACAGGTATGAGAAATGAACGAAAAGAAGGGTCTGCAGGAGACAATTGAATTGGGTTCCCTCCTTACCCCCGTCCTCGCTTCGATTCCCTATGTACTTGATATCCATCATCTCTCGGTGGTTGATATACAGCTTTCCCCAGTTGGTATCGCTTACGTCTCTCGTCCACCACCCTCCTGTGCTTGTGCGTGCATCGTTTCTTAATTAGCGGTCCCTTTCCTCTGA | |||||||||