miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TGTTGCCTCAAGCTTGCTGCC
species: Oryza sativa
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|89168546|gb|CI038900.1|CI038900 CI038900 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c

TGTTGCCTCAAGCTTGCTGCC
||.||||||||||||||||||
ACGACGGAGTTCGAACGACGG

EST sequence (targeted fragment marked with yellow):
GACTGGAAAGCCATACTAATGTTGTTGCCACTTTCTACCTATGATAAATAGAAATTCATGAGCTGAAGAGAAGAACATAAGGCTGCAAGAAAAACCGTCCAGCTATACTAATTTAATGTTTTCATTTTACTAGCTTTGGCAACAGGAGGCAGCAAGCTTGAGGCAGCAACTGCATAACTTGCAAGAATATCATCGGTATGATCTT



gi|29685906|gb|CB682181.1|CB682181 OSJNEf09D09.f OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf09D09 5', mRNA sequence

TGTTGCCTCAAGCTTGCTGCC
||.||||||||||||||||||
ACGACGGAGTTCGAACGACGG

EST sequence (targeted fragment marked with yellow):
CACGCCTTCAATTTCCTAATCAATCTCCCATATAATTCCCCTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGTAATCATCTAATGATTCTGCAATGGAAATTGATCATACATTAATATAAAATTCATCAAGAAAGTAGTTTATCAACAATTTAAATGCCACATGGAATTGTATAAGAACCACCAAAAGATGCTTAAATACTTGAAGGAAAACTTTAGGAATATAATCAGAATATTCACTGTCAGATTTATCAAGAAAGTAGTTTATCAACAATTTAAATGTCACATGGAATTGTATAAGAACCACCAAAAGATGCTTAAATACTTGAAGGAAAATTTTAGGAATATAATTAGAATATTCACTGTCAGATTTATTTTAATAGTATTCCT



gi|41884381|gb|BX929212.1|BX929212 BX929212 Oryza sativa library (Han B) Oryza sativa cDNA clone y787h05p5, mRNA sequence

TGTTGCCTCAAGCTTGCTGCC
||.||||||||||||||||||
ACGACGGAGTTCGAACGACGG

EST sequence (targeted fragment marked with yellow):
CCATGTGTGGTACCCGGGAATCGGCCATTATGGCCGGGAATGCACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGCAACTGATGGGTGAGGAGCTTTCTGGCCTAGGTGTTAGAGACCTACAAGGTTTAGAGAATAGGCTTGAAATAAGTCTACGTAATATCAGAATGAGAAAGGACAATCTTTTGAAAAGTGAAATCGAGGAGTTACATGTGAAGGGAAGCCTAATTCACCAGGAAAACATCGAACTTTCTAGAAGCCTAAATGTCATGTCGCAACAAAAATTGGAGCTGTATAACAAGCTTCAGGCCTGTGAACAGAGAGGTGCCACAGATGCAAATGAAAGTTCCANGCACTCCCCATACAGCTTTCAGTATCCATTACAAAATGCTAACTATTGCCTCCCTAGTCTCTGAATTGGAGCCCAATCACAGCCAAAGCAGAAGGGGCAGTGCAAGCACAAACACGCTGTCTCCAGACACTGGCGA



gi|218498875|gb|FG949815.1|FG949815 MA_93-11_06710 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s

TGTTGCCTCAAGCTTGCTGCC
|||||||||||.||.||||
ACAACGGAGTTTGAGCGACTA

EST sequence (targeted fragment marked with yellow):
CCCGGGCTGCAGGTCTCATCAACTGTGTTCAGAAGTGTGGGTGTGCCCCCTAACCTTGCGAACATATGCATGGGGATAGCAAATTTATCAGGCTCAATTGTAGCTATGCTTCTAATGGACAAACTAGGAAGGAAAGTACTTCTTTCAGGGAGCTTCCTTGGCATGGCCTTTGCAATGGGACTTCAGGCTGTTGGAGCAAATCGTCACCACCTTGGTTCTGCAAGCGTATATCTTTCAGTTGGTGGCATGCTATTGTTTGTCTTGACATTTTCGTTAGGAGCAGGTCCAGTGCCAGGACTTCTTTTGCCTGAGATTTTCCCAAACAAAATACGGGCCAAGGCTATGGCTCTGTGCATGTCCGTGCATTGGGTGGTAAATTTTTTTGTCAGTTTGTTGTTCTTGCGGCTTCTGGAGCAACTTGGTCCACAAGTTCTGTACACAATGTTTTCCTCAGCTTGTGTGGTAGCAGCAATATTTGTGCGGCGCCATGTGGTTGAAACAAAGGGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTGACACTATACTTGTTGCTGAAT



gi|109711801|gb|CI028971.1|CI028971 CI028971 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group

TGTTGCCTCAAGCTTGCTGCC
||.||||||||||.||| .|
ACGACGGAGTTCGGACGTTGT

EST sequence (targeted fragment marked with yellow):
TTTTTTCCTTTTTGGACCGCTGATATTTAATGGATTTGAATTCCAAAACTTATATATAGGTGGAGTAAGATTAGAAGTAAATGAACAATTTTATTTAAGATTTTCTGGTGACATTGGTTAGTTGTTGTGCACAAAGTGCACCTGAAGCATGTGTGCATAGGAATGTCCCCCCTTTTAGTCGATGTTAAGGAGTATATTTACATCTCATGTTCATGTCAGCAGACTTGAAGCTCACCTGCCATTAAATATCAAACCTAGTTTACGGGGGTGTTTTGGCCACTTCAGGAACAACTTCAAATTTGCACAATATTATGAGGCCGGCTGAAACAGGTAGAATTTTATAAGGCAGCTTCTTGGTTCAAGCTTGCTAGTGCAATTAATGTTGGGACATTAATTTTGGACAAAGTCATGCTGGTGGAGCATTCTAGGAGAATGTGATTCGGGCTTGTTGCAGGCTTGAGGCAGCAACCTCGAAACACAGAGGCATCTTTAGTATTCCCAATAATTGTGCAAATGTCAAAAGTCAGATCCTAGTTAGATTAGTATACACAATT



gi|218496715|gb|FG960254.1|FG960254 MA_PA64s_08065 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s

TGTTGCCTCAAGCTTGCTGCC
|.|||||||||.|||||.|
ATAACGGAGTTTGAACGGCAC

EST sequence (targeted fragment marked with yellow):
CTGCTAACTAGCTATGCGGAGCCATCCCTCCGCAGCTAGCTTCTTAGAGGGACTATGGCCGTTTAGGCCACGGCAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCG



gi|38468634|gb|CF952765.1|CF952765 6038rsiceb_13632.y1 Oryza sativa cv. PA64s leaf cDNA library Oryza sativa Indica Group cDNA 5

TGTTGCCTCAAGCTTGCTGCC
|||||||||||.||.||||
ACAACGGAGTTTGAGCGACTA

EST sequence (targeted fragment marked with yellow):
CGGCACGAGGCAGGTATATTAGATCAATTCAAAATATTCAAGCTGCTAAGTCCTCAATAGCATTTCCACACTGTTTTACCAACCCTGGTTATGGTAATGAAGATCAGAATTGCAGAAGTATATTTGACTCTGTAAGCTGCAGCTTTCTCTGTGTAACAAAATCGTTTCCCCCAATCGCCATAAGATAAAAGGTACTGTATGCTGTTAATAATAAATGAATAATGGGGCCAGATTTTTAAATTAGATAATAAAAAACTTAGACATTTCGATATGGTTGATTATGTAATGGTAAATGATCAGTGTAGGGTTGCAACAATAATTTGGTAGGGCGCACTATTTACTTGCCATGGTTCATTGTAGTTCTACCATGATTCGTATCGACGTCTTGACATGCTATGCTTAAATGCTGCAGGTGGTAAATTTTTTTGTCAGTTTGTTGTTCTTGCGGCTTCTGGAGCAACTTGGTCCACAAGTTCTGTACACAATGTTTTCCTCAGCTTGTGTGGTAGCAGCAATATTTGTGCGGCGCCATGTGGTTGAAACAAAGGGAAAGACTTTGCAAGAGATAGAAGTTTCGCTTCTACAAACACAATAAAGATTTCATCAGCGAGTTTGAGGCAACAACAACCTACATGATTAGCATCTG



gi|88415047|gb|CI601879.1|CI601879 CI601879 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone

TGTTGCCTCAAGCTTGCTGCC
||||||||||| ||||||||
ACAACGGAGTT-GAACGACGA

EST sequence (targeted fragment marked with yellow):
GCTTATCACTAATTCAATAAGCAAGGACCTTCCTGCTACTTTGGAGAAGTCACTGAAGAAAGAAATTTCTTCACTTGGACCTGTTATTGCACGGGCAATAACACCTATTATCGAGAAGTGTTCAGCCTCTGCAGTTGCTGATTCAATTCAGAAAGTGGTTGGTGACACAGTGGTGAATCAGCTGGACAAGTCTGTTAGTGCAAAACTTGAAGCTACTGTTGCTAGACAAATCCAAATGCAGTTCCACACATCTGTAAAACAGACCCTTCAGGATGCTTTACGTGCTACCCTGGAAGCTTTCCTTGTTCCAGCGTTTGAACAATCTTGCAAGACAACTGTTTGAGCAAGTCGATAGCGCATTCCAGAAAGGAATGTCTGAACACAGTGTTGCTATTCAGCAGCAAGTTGAGGCAACA



gi|117219492|gb|CT858661.1|CT858661 CT858661 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD

TGTTGCCTCAAGCTTGCTGCC
||.||||||||||||||||||
ACGACGGAGTTCGAACGACGG

EST sequence (targeted fragment marked with yellow):
ATCTCTCTCCTCCCTCTAAAACTCTCTCTCTCTCTCTCTCTCTCGCGGGGTATTGCAAGATAGTAGCTAATTAACCAGCCTTTGGCCTTCAGTTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTCCTAATCAATCTCCCATATAATTCCCCTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATAATGTTTATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGGGGGGGGGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTTGCAAGAAAGCCACAAGCAACTGATGGGTGAGGAGCTTTCTGGCCTACGTGGTAGAGACCTACAAGGTTTAGAGAATAGGCTTGAAAAAAGTCTACGTAATAACAAAAATGAAAAAGGGAAGCCTAAATTCCCCAGGAAAACATCGAACTTTCTAAAAGCCCTAATGGCATGTCCCAACAAAAATTGGAACTGGTTAACAAGCTTTCAGGCCTGGGAAAAAGAAGGGGGCCCCAAAAACCAATGAAAGTTCCCACCCTTCCATACGGCTTTTCGTATCCAAAAAAAAAGGGTAATGAGGCCCCCCAAAGCTGGGAATTGGAGCCAAACCCCACGCAAAAGAGAAAAGGGGGAGGGGGGAGTAAAAAACACCTTGGCCCCCAAAAAGGGGGCGAAAAAATTTTATTTTGCCCTTTAAAAAATTTTGGGGCGGAAAAAAACGGGGAGAAAAAAAAAAGTGGTTAATTATTTTCTAAAAAAAGACCAACCAAAGACGCCTCTTTTTGAAAGAAGATGAGAGTGATATTATTTTTGTGTGGTAGAATGAGGTGGGAAAAAAGAAAAAAAAAAAACAAAAAGAGGAGGAAAACAAAAAACAAAAAAAAAAAAAAAGGAGGGGGAGAAACAAATAGAAAAAATTATTCTGTTTGTGTGTTTCGATGGGGAAAGAAGAAGC



gi|86418376|gb|CI032585.1|CI032585 CI032585 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c

TGTTGCCTCAAGCTTGCTGCC
|||||||.|||. ||| ||||
ACAACGGGGTTTCAACAACGG

EST sequence (targeted fragment marked with yellow):
TTATCAACTCCATCTGAAGATCATCTTTCACTGCACTGCTCTTGAAATACAGACGCATCATGCAGAAGCAATGCAGGCAACAGCAAGTATTCAACATGGAAAAAAAAAGCAGTAATAACTAGTGAGAACGCAATGTATCTTGTCCATAAATCATAGCAGGATGGTCATGTCCTGTCCTGGTAACATCCACAAACATATAGCATAAGTTCAGGGCACCAATTGTTATGCCAGTTACAGGAATTATTCAACGGAGAGGCAGTGTGACATCCTTGCCATGAAGGCAGTTCAACAGACGGGCACTCGTTAGCCCGGCGGCCAGTTCATCTGCCTGCCTCCGAGGAGATGTACATGTATGTGGTAAACAGATTGGCATCCACTGGGNGCCATCATTGGATGAAACAATACGGTAGNNCCATCTTCANNAGTCCCTCCTGGCTTTNGGCAACAACTTTGGGGCAACATAGAAGGAGGTAACNCGAGTATTTCTACATGCCTCTCTTCTGC



gi|86844448|gb|CI337728.1|CI337728 CI337728 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone

TGTTGCCTCAAGCTTGCTGCC
||.||||||||||||.|||||
ACGACGGAGTTCGAATGACGG

EST sequence (targeted fragment marked with yellow):
GCAACAAAAGTTCTTGTGATTTTCTGATAATAGAGATAGTGTAATCGTACATGAGCAGATAATTTGCTCTAACAACCTCAGGTATATTTGTATTGAACATATGATGCCTACTAAAGATTTCCTGGAAGGTCTCTTGGAATTGGAGTCTCTTATTGTTGTGCTGGTTTCATGGTTTAGCAAACAAAGGCAGTAAGCTTGAGGCAGCAACTGCATAACTTGCGGCAAAATCATTGGCAAGATCATCATCCAACAAGTTTCTCGCAAGTTATGCAGTTGGTGCCTCTAGCTTATTGCCCCTGGTTACAAAACCTACAAGAAGAACTAGTAAATGTTAGCACAATCAAGTGTCAAGTATTGTCAATAACAAATATAGTTTTGCTATGTTATTATTACTTTATTAGCCATCCGAAGTGGAAAATATGCATCACACACAATGGAGGCCTCTCCAACTCTAAAA



gi|40489564|gb|BX899527.1|BX899527 BX899527 Oryza sativa library (Han B) Oryza sativa cDNA clone y679b08p5, mRNA sequence

TGTTGCCTCAAGCTTGCTGCC
||||| |||||||| ||| ||
ACAACAGAGTTCGACCGAGGG

EST sequence (targeted fragment marked with yellow):
CGCTCTGTTGGTACCGGGAATCGGCCATTATGGCCGGGGGGAGCCAGCTTGAGACAACAAGAAGGCCATGAACATCCAGGTTTTAGTTTTTGATTGGCATATAAAAATCTGATGAACTGTGTTGGCGGATGGCATGAGGCCCTTCGACCAAATTTGCCGAAACCCGTGGCGAAGGCTATGAACCAAGGATGATGCGAGGCGAAGGGTCGCGTGAGTACCTGCCGAAGAAGGACGACTTCGCCATAGCCAGTTCGCCCTGGCATCCAGCGAAGAAGGACGGCTTCGCCATGTCCAGTTCGCCCTGGCATCCAGCTTGAAGAAGGACGGCTTTACCATGTCCAGTTCGCCCCCGCAAGGGCCAAAGAAGCCTTTTCGGCCCATCAAGCTTAGGGGCTATAGGGCCGGCGGTCGCCTGACGGCCCATCAAGGGCCCATAAGTCCTCTTGACATTATGTAACCCTGTAAACGTCCCTATCATAAGGGCAACCATGTAAATTCCCCCGTATAACCTAAATCCTAGTAGTAAGAACCTGTAATGGGGCTATAAATAGTCCCCTAGGGGCATGTAATGGGGGATCCCAAGAAAAATTCAAAATTTAATACACTTCGGTTCTTTTCCGAAAAAAAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCTATAGGGGTGGATACAATCACTGGCGAGGTTCAAGGCTGATGGAAGCAGCGGTTCAACTAAAGATCGATGAGTCCATTGACAGGGCTTAAGAGCGCAGACAGCACACATCAGCATGAGGAGATACTCATCGTATTGATACAGGGACACAGTAGGCAAGAGGATTCGGNN



gi|29676597|gb|CB672872.1|CB672872 OSJNEe07C07.r OSJNEe Oryza sativa Japonica Group cDNA clone OSJNEe07C07 3', mRNA sequence

TGTTGCCTCAAGCTTGCTGCC
|||||| ||||||.|. .|||
ACAACGAAGTTCGGATTGCGG

EST sequence (targeted fragment marked with yellow):
CATGACCTTGATGTTATTTGCCGGGCACATCAGGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATATTCTCAGCTCCAAACTATTGTGGTGAATTTGATAATGCAGGTGCAATGATGAGTGTTGATGAAACTTTGATGTGTTCTTTTCAAATTCTTAAACCTGCTGAGAGAAAAGGCAAATTTATGGCATCAAACAAAATGTGAAATGGTGAAGCCCATTTCGCTCATAGCGACTCTGAGGCTGTCCTGTGGATGCATCTAGACATCAACGTGCAGGCGTTAGGCTTGAAGCAACATTGGGCTAATTTTACCGGAGAAGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATGGCAAGTGCCAATTTTTTTTCCATTTTCTGTTATGATGCGTGAAACTATCTTGTAGATGTAGATATATTGATTATGGAAGGATGAAGTTGCCAATTGACCTGAGGCGGTTTCCTTCTGCAGCCAGGAAAAATCTGAATATGGAGTTTCTGTTTGGTAGTTTCACTATTTAAAAGCACATGTATCACTTGTATGGAGGTAACAACTTTACTTATGCAAGCCCCTCTTAAGGGTTGCTTGTAAGCAAAAT



gi|218496879|gb|FG955835.1|FG955835 MA_PA64s_03646 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s

TGTTGCCTCAAGCTTGCTGCC
|||||| ||||||.|. .|||
ACAACGAAGTTCGGATTGCGG

EST sequence (targeted fragment marked with yellow):
ATTCGGCCTCTCTCCTGATCTGACACATTTAGATGAGATAAAGAGCTTGCCCCGTCCTACTGATGTACCGGATACAGGTCTGCTATGCGACCTACTTTGGTCAGATCCAGGAAAAGACGTTCAAGGTTGGGGCATGAATGATAGGGGGGTCTCATACACTTTTGGTGCTGACAAAGTTTCAGAATTCCTGGAAAAACATGACCTTGATCTTATTTGCCGGGCACATCAGGTTGTTGAGGATGGATATGAGTTCTTTGCCGACAGACAACTTGTCACCATATTCTCAGCTCCAAACTATTGTGGTGAATTTGATAATGCAGGTGCAATGATGAGTGTTGATGAAACTTTGATGTGTTCTTTTCAAATTCTTAAACCTGCTGAGAGAAAAGGCAAATTTATGGCATCAAACAAAATGTGAAATGGTGAAGCCCATTTCGCTCATAGCGACTCTGAGGCTGTCCTGTGGATGCATCTAGACATCAACGTGCAGGCGTTAGGCTTGAAGCAACATTGGGCTAATTCTACCGGAGAAGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATGGCAAGTGCCAATTTTTTTCCCATTTTCTGTTATGATGCGTGAAACTATCTTGTAGATGTAGATAT



gi|29646186|gb|CB651193.1|CB651193 OSJNEb16B02.r OSJNEb Oryza sativa Japonica Group cDNA clone OSJNEb16B02 3', mRNA sequence

TGTTGCCTCAAGCTTGCTGCC
|||||| ||||||.|. .|||
ACAACGAAGTTCGGATTGCGG

EST sequence (targeted fragment marked with yellow):
GGTCCAAACTATTGTGGTGAATTTGATAATGCAGGTGCAATGATGAGTGTTGATGAAACTTTGAGGTGTTCTTTTCAAATTCTTAAACCTGCTGAGAGAAAAGGCAAATTTATGGCATCAAACAAAATGTGAAATGGTGAAGCCCATTTCGCTCATAGCGACTCTGAGGCTGTCCTGTGGATGCATTTAGACATCAAAAAACAGGCGTTAGGCTTGAAGCAACATTGGGCTAATTCTACCGGAGAAGCCAAATAATATCATATCTAACAGTTGGTCTGGAAGGTTACTCTTCATGGCAAGTGCCAATTTTTTTTCCATTTTCTGTTATGATGCGTGAAACTATCTTGTAGATGTAGATATATTGATTATGGAAGGATGAAGTTGCCAATTGACCTGAGGCGGTTTCCTTCTGCAGCCAGGAAAAATAAAAATATGGAGTTTTTTTTGGGGAATTTCACTATTTAAAAGCACATGTATCACTTGTATGGAGGTAACAACTTTACTTATGCAAGCCCGTAAAGGTGTTGCTTGTAAGCAAAATTGGATGAGTT



gi|66913257|gb|CX100105.1|CX100105 RECm0919 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl

TGTTGCCTCAAGCTTGCTGCC
||.||||||||||| || ||
ACGACGGAGTTCGACCGCCGT

EST sequence (targeted fragment marked with yellow):
CAGCGGAGGGACGGTCGGAGATTCCGGGTGACCACGCGTCGCTCTCTGTCTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTAATTAACCAGCCTTTGGCCTTCAGTTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTCCTAATCAATCTCCCATATAATTCCCCTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTAGATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATAAGGAGGATAGACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCAAAGGAGGAGCTACTTGGCGGGAATGCACTTCAGAAATCAAGATTTGGCAGAGGGATGCCGCCAGCTTGAGGCAGCAACTGCACACTTGCAAGAAAGCCAAAGGCACTGATGGGTGAGGAGCTTCTGGCCTAGTGTTAGAGACTTACAGGCTTCCGGATCGGGTGAAATCAGCTACGTATATCCAATGGAACGGCCCCCTTTGCACAGGAACCCGGGCTCCTGTGAGGGGACCTATTCCAGGAAAATGAATCTTAAGCTAGTCGTTGACAAAGGGGGGTTACGCTGGCGGAACAAGGGCGGTTGTAGATGACCCAGGTGGGATCAGGCTGTCTCTCTTAGACACAGAGNGAGGATATCACTAAGACACCGCGCCATTCGTGCGCAGTGATAGTACCTCAGCTCAGGCGACTAGGCGTGCTGGCGTCTAATCAGAGAGGTAGCAGCAGATGACTGGTGAGTAGAGG



gi|33681190|gb|CF309429.1|CF309429 ABF--03-J22.g1 ABF3-overexpressing transgenic rice plasmid cDNA library (ABF) Oryza sativa Ja

TGTTGCCTCAAGCTTGCTGCC
||.||||||||||||||||||
ACGACGGAGTTCGAACGACGG

EST sequence (targeted fragment marked with yellow):
TTCTCTCTCTCCTCTCCCTCTCTCTCTCTCTCTGTCTCTCTCTCTCGGGGTATTGCAAGATAGTAGCTAATTAACCAGCCTTTGGCCTTCAGTTTCCCCATCGGTTCATCAGAGCACGCCTTCAATTTCCTAATCAATCTCCCATATAATTCTTTTTAGCTTGTATGCCTATCATTAGTACTTCTTGTGTTGTGTTGTCTTCTTGCCTTCTTTGAGCTAGAGCTAGCTAGGTTTGTGACCTGCTGTACGTGCGTGTGTTAATTAGATAGATGTCTTANATCTGGGAGAGAGCGAGGAGATGGGGAGGGGGAAGATAGTGATAAGGAGGATATACAACTCGACGAGCAGGCAGGTGACGTTCTCGAAGCGTCGGAACGGGCTTCTGAAGAAGGCGAAGGAGCTATCCATCCTCTGCGATGCGGAGGTCGGCCTTGTCGTCTTCTCCAGCACCGGCAGGCTCTATGAGTTCTCCAGCACCAACATGAAAACTGTGATAGACCGGTATACCAACGCANAGGAGGAGCTACTTGGCGGGAATGCAACTTCAGAAATTAAGATTTGGCAGAGGGAGGCAGCAAGCTTGAGGCAGCAACTGCACAACTTGCAAGAAAGCCACAAGCAACTGATGGGTGAGGAGCTTTCTGGC



gi|218487267|gb|FG944918.1|FG944918 MA_93-11_01813 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s

TGTTGCCTCAA-GCTTGCTGCC
||||||||||| ||.||| |||
ACAACGGAGTTACGGACGTCGG

EST sequence (targeted fragment marked with yellow):
CCCGGGCTGCAGGCATTGAGGCAACACGCGAAACAAGCGTTACTTTATCATCGGAAAGTTTGATGGAATTCTTGGTCTTGGCTACCCTGAAATCTCTGTTGGGAAAGCTCCTCCGATTTGGCAGAGCATGCAGGAGCAGGAACTGCTTGCAGATGATGTCTTCTCATTTTGGCTGAACCGAGACCCGGATGCATCCTCTGGTGGTGAGCTCGTCTTTGGTGGCATGGATCCGAAGCATTATAAGGGGGATCACACCTACGTCCCTGTTTCCCGCAAAGGCTACTGGCAGTTTAACATGGGGGATCTCCTTATTGATGGCCACTCAACTGGCTTCTGTGCAAAAGGCTGTGCTGCTATTGTCGACTCCGGAACTTCCTTGCTTGCTGGTCCAACAGCTATAGTTGCTCAGGTGAACCATGCTATTGGGGCTGAAGGAATCATCAGCACGGAATGCAAAGAAGTGGTTAGCGAGTATGGAGAGATGATCCTCAACTTGCTCATAGCACAGACAGATCCGCAGAAAGTATGCAGCCAGGTTGGTCTGTGTATGTTTGACGGTAAACGCTCAGTAAGCAATGGGATTGAATCTGTTGTCGAC



gi|218482709|gb|FG963542.1|FG963542 MA_LYP9_02326 Mature embryo cDNA Library of LYP9 Oryza sativa Indica Group cDNA 5', mRNA seq

TGTTGCCTCAAGCTTGCTGCC
||||| ||||||| | |.|||
ACAACCGAGTTCGCAGGGCGG

EST sequence (targeted fragment marked with yellow):
GCGCTCTAAACTAGTGGATCCCCCGGGCTGCAGTGGCACTCGTCCATGCCTCATTTTTCCCCTTCCGCAGCCACTGCAGATGGTTGGTGATCATAGGGATTTCTCTTGGTTAGGATTAACCTAATTAACCATCCGGCATGATCCATGCATGGCACAGCTTGTGGGTCTCCTATTTTTGGGGTTGATCTTCCTCCTTCCTCCCCTTGGTATTAGAGGACATCATCTCCCTGTCCCCTCTTTGCCCTGCCATTTCCTTCTCCTTCCTCCTGCAGCAGCTGTCGTAAGTCGTGGCACGACAGCTGCTGCGAGATCCATCGCACCAGGAAGGATCCTTCCGAGGAGGAAAGGCAAACGGCGGGACGCTTGAGCCAACACACACCATTGACAAAAACATTAATTAGATCGTGATAGAGGAATTTAACAATCACAGAAGCCATGGCAAGCAGCGGCAAGGAGCACCGGCGAGGTGTTCCACGCCCACCGCCGTTGTCGCTCTACATCGAGAGGGAGCAAGGTGAGGTCATCATGGCTGGTCAGGCGCTGGCGACGACGAGGATGCTCCAGCAGGTCGCCACCAGCAGCAGTGGCAAGAAGAGGATACTGTCCAAGCAGCTGTCCATGAAG