| mature miRNA: TGTTGCCTCAAGCTTGCTGCC species: Saccharum hybrid cultivar SP70-1143 database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|35271132|gb|CA219134.1|CA219134 SCRFAD1117B09.g AD1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCRFAD1117B09 5', mRNA seq TGTTGCCTCAAGCT-TGCTGCC EST sequence (targeted fragment marked with yellow): TAGGGCAGCAGAGTTTGAGGCAAAAAAAAGATTTGGGTGGCTATGGGTGATATGGGGAATCTAACAATTAATTGACAATGATTTCACCGTGGTGTGCATTGGTAGCTTCAAGACGAAGGCATTTTCCATATGTAAGCCACAATTTCAGTATCTTATTCTTCTGAACCAGGAAAAGCGTTCTGGTAAGGAGTATGAAAGAAGAGTACGAAAAAGGAAGTCCAAAGTGGTAGATCCAGGACATGCCAATTTCTTTCTCATCTTTCGCATCGCCGCGCATGGTTTTCTCAAGATCGTATTTAATTAAAGAAGAACGGAGATTGAGAAGAAGATAAAATGAACTTAAGTCCTCGTCTCAAGAGAGGGACGAGTCGAAATTCGTTCTGGACTTGTGCACGTAAAAAGGCTTCCACGTTTGTAAAGAGAAGAAATGGGTAGAGCAAAAAAAGAACATATGAAAAGAATAGGCCTGANTTGATTCGTCTGCTCGTGGGATTGCCGATATTGCTACCCGGCTACACTGAAAGAGGGAAGCGAATAGCCTGAAGATTCTTTTCTTTGTGTCTCACTATCAGAGCTTGCGAGAGAGACCAAAAATACTCTCTTCGGCGACTTAGACTTACTCCATTTTGCGATGTCTTGCACCCGCGCAGGAAGGGTTGAATTGTCTGATTTCACTCGTGAGATATGGATCTACGTTAGGCTTATTACTCATCTTTCTACCGGACTACTTGAACCAATAATTACTCCTTAAGCATTCCATGTCATATTATGGACTTAATCGATGGTACTAATTCATCCGACATGGATTCTGTAAACATTTTAATATATCTACCATATGTTGGTTCAAATGAAAGTCTTTAGTGATTTTTTGATAATGGTCC | |||||||||
gi|34956548|gb|CA103241.1|CA103241 SCEZHR1047H08.g HR1 Saccharum hybrid cultivar SP70-1143 cDNA clone SCEZHR1047H08 5', mRNA seq TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): GCCCCGCCGTGCCCATCGTCGGCCGCGCCGCCGCCGCCGTGGCCCCGGCGGAGCTGGAGCTCAGCTGGGTCGCGATCGACCCCGCCAGCGGGCGCGCGGTGAACGTGTCCAGCCGCCGCCCCGTCGCCGTGGACAGGCACTGGTACACGGGCGACACGCTGGTGCGCTACGCGGTCGTGCTCGGCGGCTGCAAGTTTGAGGCCACCGTCACCTGCTCCCAGGAGACCGGCCACGTCCGGGAGATCAGCCTTACCGTCGAGGACGCCGATGGCGCGGCGGTCAGCGGCGAAGGCACCCTGCGGCTGCTCGCGGCAGCCATGGCGGGGACGAGGAAGGGTGGGGCGGAGGAGCAAGAGGAGACGGCCAAGCGGAGGTACGAGGACTTTGTCAGGAGCAAGAGGGGCAGGAAGGAGTCCAAGGCCAGGAAGGAGGTGCTCGTCGATCTCTGCTGCTCCGCCGTCAGCGCCGTTGCCGTTCTCAGCTTCATTGCCACCGTCGTGCTCCGGTAGTGCTGCTGTGTCCTGGCGATGCATCTCATCCTCAACATTATTTAGGAGTTCTTCACTAGCATCATGTTAATTCTAAATTCCTCTGGGAGAGTTCTCTTTCTTTTCAAGTTGGGTGACTATATATTTTATTAGGCACTTAAATTTGGTGATACAGCAGCATGTCCAACAATGTGCCAGTGGAAACAAAGAGACCAAAAAAGGTACTCTATCGGTCTCTTCTTTTGGA | |||||||||