| mature miRNA: TGTTGCCTCAAGCTTGCTGCC species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|45953749|gb|CN127596.1|CN127596 RHOH1_24_A02.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_24_A02 TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): GACATTTTCCCCCCGTCAAGGCATAATCCACCATCCAATACATTCATGGTCACTGGGACTCATTCATGAAACAAGATTGAGAAAGTGCAGCGACTTAACTGAACAAACCGAAAGGGGCAGGTATGAATCGTATGTGCGAATAAACAATCGATTCAAATCCTATCGAATCTTCAATCTACCGAGTGGGTACAGCACCAGAAAATAGCAAGCACTGGCTGCAATTATGGAAAGGTACTTAAAAGCTGATCAGGTCATCCTTCTTCGGATCTGGCTTTTTCGGCCCATCCTGGGAGCTGCTACCTCCCTTCTTGCCAAATATCATCTCGTCGAGATCATCAAGGATATCATCATCTCCACCTGACCTTGCTCTCGCGGCAGCTGGTTTTCTGACAAGGGCGTCTTCATTGCCGATAGCAGTCGAATCTTCATGTTCTGTGGCAATCGGTATGACAACTGGTCTCTGTTCTGCATGCTCTGAGGCCCTGGGCTGCTTCATCTCCTCGTACTTCGATAACACTTTCTGGATCTCATCGTTCACGCTCAAGGCCTCAAAGAGCACAGCTTCGTTGTCTCCAACGGTCTCAATAATCCTCTGGATAGTGTGCTGAGATTGGTAGCATTGTTGCACAAGAGTGGCTGTCAAGTCATCCTGCAAAGCATCCTGTTCAGGGGAAGACGAAAGAACAGTTGAAAGAAGTTCTATGCTGTTACGAGCTACATCAAATGCTTCTTTTGTTTCTTCAGCAGTATATGTATGAACATGGATGTCTTCGAATGCTTGCTGGGGCAAGCTTGAGTCAACATCAGCTTCA | |||||||||
gi|45982605|gb|CN144246.1|CN144246 WOUND1_21_B11.b1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_21_B11_A002 3', mRNA s TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): ACACTGGACATTTTCCCCCCGNTCAGGCATAATCCACCATCCAATACATTCATGGTCACTGGGACTCATTCATGAAACAAGATTGAGAAAGTGCAGCGACTTAACTGAACAAACCGAAAGGGGCAGGTATGAATCGTATGTGCGAATAAACAATCGATTCAAATCCTATCGAATCTTCAATCTACCGAGTGGGTACAGCACCAGAAAATAGCAAGCACTGGCTGCAATTATGGAAAGGTACTTAAAAGCTGATCAGGTCATCCTTCTTCGGATCTGGCTTTTTCGGCCCATCCTGGGAGCTGCTACCTCCCTTCTTGCCAAATATCATCTCGTCGAGATCATCAAGGATATCATCATCTCCACCTGACCTTGCTCTCGCGGCAGCTGGTTTTCTGACAAGGGCGTCTTCATTGCCGATAGCAGTCGAATCTTCATGTTCTGTGGCAATCGGTATGACAACTGGTCTCTGTTCTGCATGCTCTGAGGCCCTGGGCTGCTTCATCTCCTCGTACTTCGATAACACTTTCTGGATCTCATCGTTCACGCTCAAGGCCTCAAAGAGCACAGCTTCGTTGTCTCCAACGGTCTCAATAATCCTCTGGATAGTGTGCTGAGATTGGTAGCATTGTTGCACAAGAGTGGCTGTCAAGTCATCCTGCAAAGCATCCTGTTCAGGGGAAGACGAAAGAACAGTTGAAAGAAGTTCTATGCTGTTACGAGCTACATCAAATGCTTCTTTTGTTTCTTCAGCAGTATATGTATGAACATGGATGTCTTCGAATGCTTGCTGGGGCAAGCTTGAGTCAACATC | |||||||||
gi|18061262|gb|BM323459.1|BM323459 PIC1_19_E07.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): GCACGAGGGCCTCTAGCGCTAGGCTACCTAGCTTCCCGTCTCTTCCCCATCAGATCAATCGTCCTGGCCGGCTATCTCAACTTCGTCTTGCTTCTTCCTGTGCTCCTTTTTGTTCCTGGACGGCTAATAACTAGATCTGAGAGGCAGAAAAAAGAGGGATGGGGAGGGGGAAGATAGTGATAAGGAGGATCGACAACTCGACGAGCAGGCAGGTGACCTTCTCTAAGAGACGGAACGGGCTGCTGAAGAAGGCAAAGGAGCTCTCAATCCTCTGCGATGCGGAGGTTGGCCTCATCATCTTCTCCAGCACCGGAAGGCTCTACGAGTTCTCCAGCACCAACATGAAAGCTGTGATAGACCGATACGGAAAGGCAAAAGAGGAGCAGATTGGCACCAACAATGCAACTTCAGAACTCATGCTCTGGCAAAGGGAGGCAGCAAGCTTGAGGCAACAACTGCACAACTTGCAAGAGAGCCACAAGCAACTAATGGGAGAGGA | |||||||||
gi|15724743|gb|BG355718.2|BG355718 EM1_18_F05.b1_A002 Embryo 1 (EM1) Sorghum bicolor cDNA, mRNA sequence TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): GCACGAGGCAGGGAGAAGCTTGAGGCAGCACGTCAAGAAGAGCGGGAAGCTAGGATTGCCCATGGAGATAAGAAGAATGATTTAAATAGTGTACGTTCGGTATTAGGGAAATTGCACCAAGCAAATTCAGTTGAAGAACTTGATGAGCTGATTGCAAAGAAAGAGAGGACTATGCAACATGAGACCATTTCTTCTTTGAAAGAAGAAAAGCTTTTAATTAAAGAGATTAATGAATTAAAAGCCCAACGGAAGCAGCTGTCTGCCACTATGGGCTCAAAGGCTGAAATCAATGAGGCATTTGACCAAAAAGATCACATTCATGAGCGGCATAAGGTGTTAAAGAAGGATTCTGATGTTTTATTTACCAACCTGAAAGCCCTAGAGGAAAACACAAGAAAGATTCAAAAATCTTTCGAAGATGAAAGAACAGCTCTAAGAAAATTAACAGAGGAACACCGAGCAGCTAATGAAATACGCCAAAAGGCCTACAGTGAGTGGACTGAGCTTAGAAATGAGCCCAGCAAGAAGAATGAATACTTTTTCGAGTACAGGGATGCCCGGAATGCAGCAGAAACTTTCAGAGCTAATGGAGATGCAAATGGACTTAAAACACACTGTAATAGT | |||||||||
gi|45976780|gb|CN140660.1|CN140660 OX1_45_G02.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_45_G0 TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): TTTGAGGGGGAGCAAGTTGGGGCAACACTGGTAGATCTGTTTTTCTTTAATGGTGAAGAGGAAGATGACATTGATTGGGAACCTGCTAGTCGCCTTGTTGAGGATAGATGGTTTTGCTTTAACTGCACAATGCCGATTGTGGATCAGATTACACATTGCATGAATTGCCGTGAGCTTAAGGAATCTGCAGTAGATGGATATGATGTTTTCAAAAAACAAATTGCACAGACAGCTTTGTTATCTGCCGACACAGAGTTGCTGCCAGTATCTACAGCGATTGGTTTTGATGAAAGAATGCTGCTCCACAGTGAGCTAGAAGTTAAACCAAATCCGCATCCAGAAAGACCGGATCGCCTTCGCGCCATTGCTGCAAGTCTTGCTGCTGCAGGGATCTTTCCCTCAAAATGTGCTTTGGTACCTCCTCGAGAAATCACGAAGGAGGAACTCCTTATGGTTCATAGTCCAGACCACATTGAAAGTGTCGAGCAGACAAAGAACATGCTTTACAGTTACTTCACTTCGGATACTTATGCAAATGGACATTCAGCATGTGCTGCCAAACTTGCAGCTGGATTATGTGCTGATCTTGCTAGTTTGATGGTATCTGGGCGTGTTCGTAATGGTTTTGCTCTGGTAAGACCTCCTGGGCATCATGCAGGGGTGAAGCAAGCAATGGGTTTTTGTCTTCACAACAATGCAGCAGTGGCTGCTTTAGCTGCAAAAAGAGCAGGTGCCAAGAAAGTCCTCAT | |||||||||
gi|9851777|gb|BE596704.1|BE596704 PI1_58_F04.b1_A002 Pathogen induced 1 (PI1) Sorghum bicolor cDNA, mRNA sequence TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): GCACGAGGGCTATCTCAACTTCGTCTTGCTTCTTCCTGTGCTCCTTTTTGTTCCTGGACGGCTAATAACTAGATCTGAGAGGCAGAAAAAAGAGGGATGGGGAGGGGGAAGATAGTGATAAGGAGGATCGACAACTCGACGAGCAGGCAGGTGACCTTCTCTAAGAGACGGAACGGGCTGCTGAAGAAGGCAAAGGAGCTCTCAATCCTCTGCGATGCGGAGGTTGGCCTCATCATCTTCTCCAGCACCGGAAGGCTCTACGAGTTCTCCAGCACCAACATGAAAGCTGTGATAGACCGATACGGAAAGGCAAAAGAGGAGCAGATTGGCACCAACAATGCAACTTCAGAACTCATGCTCTGGCAAAGGGAGGCAGCAAGCTTGAGGCAACAACTGCACAACTTGCAAGAAAGCCACAAGTATGGTCTGCAATTGATTCTGAAAAAAAAAGGATCACTCATCAATAGGAAGTTTCAATGACACATGAAAAACTTCATAGAACATAAAAAAGTGAAACGTTTCAACCAAGGATTAAGTAAATATATAGTTATTGAAGACATTAACAACATTCATTATTTCAG | |||||||||
gi|9296098|gb|BE354988.1|BE354988 DG1_10_H09.b1_A002 Dark Grown 1 (DG1) Sorghum bicolor cDNA, mRNA sequence TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): GTAGCCTTCTCCTTTTGCAGGGCTCCTGCTGGCCGGGCTTCCCAGTCTCTCCATTGCTATCCGTGCGTGTACCTGCGCCGTGTGTGGTGCGCGTGCAAGACCGGCCAGACGCAGCTTGACGACGATGGGGCGCGGCAAGATAGTGATCCGCCGGATCGACAACTCCACGAGCCGGCAGGTGACGTTCTCCAAACGGCGGAACGGGATCTTCAAGAAGGCAAGGGAGCTCGGCATCCTCTGTGATGCGGAGGTCGGACTGGTCATCTTCTCCAGCACCGGTCGGCTCTACGAATACGCCAGCACAAGCATGAAGTCAGTGATTGATCGATATGGTCGAGCGAAGGAGGAGCAGCAGCTTGTAGCAAACCCCAACACAGAACTTAAGTTCTGGCAAAGGGAGGCAACAAGCTTGAGACAACAACTGCACAACTTGCAAGAAAATCATCGGCAGTTGATGGGACAA | |||||||||
gi|45966739|gb|CN134887.1|CN134887 OX1_29_D11.b1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_29_D1 TGTTGCCTCAAGCTTGCTGCC EST sequence (targeted fragment marked with yellow): GCGAATAAACAATCGATTCAAATCCTATCGAATCTTCAATCTACCGAGTGGGTACAGCACCAGAAAATAGCAAGCACTGGCTGCAATTATGGAAAGGTACTTAAAAGCTGATCAGGTCATCCTTCTTCGGATCTGGCTTTTTCGGCCCATCCTGGGAGCTGCTACCTCCCTTCTTGCCAAATATCATCTCGTCGAGATCATCAAGGATATCATCATCTCCACCTGACCTTGCTCTCGCGGCAGCTGGTTTTCTGACAAGGGCGTCTTCATTGCCGATAGCAGTCGAATCTTCATGTTCTGTGGCAATCGGTATGACAACTGGTCTCTGTTCTGCATGCTCTGAGGCCCTGGGCTGCTTCATCTCCTCGTACTTCGATAACACTTTCTGGATCTCATCGTTCACGCTCAAGGCCTCAAAGAGCACAGCTTCGTTGTCTCCAACGGTCTCAATAATCCTCTGGATAGTGTGCTGAGATTGGTAGCATTGTTGCACAAGAGTGGCTGTCAAGTCATCCTGCAAAGCATCCTGTTCAGGGGAAGACGAAAGAACAGTTGAAAGAAGTTCTATGCTGTTACGAGCTACATCAAATGCTTCTTTTGTTTCTTCAGCAGTATATGTATGAACATGGATGTCTTCGAATGCTTGCTGGGGCAAGCTTGAGTCAACATCAGCTTCAGCAACTGACCGT | |||||||||