| mature miRNA: TGTTGTCTCGGCTCACTCAGA species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|198328528|gb|FL997225.1|FL997225 CCHY24657.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY24657 5', mRNA TGTTGTCTCGGCTCACTCAGA EST sequence (targeted fragment marked with yellow): CTTGCCTATATGCAGATGTATGCCCCGACAACTTTAGTCCCTGCACGTGATTTTTGGACGTTACGATACACAACAACAACTGAAGATGGCAGCCTTGTGGTCTGTGAGAGATCCTTAAGTGGTTCCGGGGGTGGTCCAAATGCAGCCTCTACACATCAATTTGTAAGAGCCGAGATGCTTCCAAGTGGGTATTTAGTTCGCCCATGTGAAGGTGGGGGTTCGATCGTGCATATAGTGGACCATCTAGATCTCGAGGCTCGGAGTGTTCCTGAAGGGCTTCGACCACTTTATGAGTCTTCTAGAGTAGTTGCTCAGAAAATGACTACTGTGGCACTGCGGCACCTTAGACAAATTGCTCAAGAAACAAGTGGGGAAGTAGTTTACGCCTTGGGCAGGCAACCTGCAGTCCTGAGGACCTTTAGTCAAAGGCTGAGCAGGGGCTTTAATGATGCCATTAGCGGTTTCAACGATGATGGCTGGTCTATAATGGGTGGAGATGGAATTGAAGACGTTGTAGTTGCTTGCAACTCAACTAAGAAAATTAGGAATAGCAGCAGCGTGGGGATTGCATTTGGAAACCCTGGAGGCATTATTTGTGCGAAGGCGTCCATGCTACTGCAGAGTGTCCCACCGGCAGTACTGGTTCGATTTTTGAGGGAACATAGATCTGAATGGGCCGATACAACATTGATGCCTATTTGGCTTCATCACTGAAGGCTAGTGCGTGCTCACTTCCCGGGTTGCGACCCATGAGATTTTCTGGGGGCCAGATGATCATGCCGCTAGCTC | |||||||||
gi|198015538|gb|FL760190.1|FL760190 CCGC921.b1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgatu TGTTGTCTCGGCTCACTCAGA EST sequence (targeted fragment marked with yellow): CTTCAGGATAAGTATTCCATACCCACTGCAATGGGGTGCACCAACTTTCAGTGCAGATCATTCATTCGGTATGATGTCTGCTGTGCTGGTGTCCTTAATAGAGTCTACTGGGGCATTTATGGCTGCTGCCCGGTTGGCAAGTGGGACGCCACCACCACCATTTGTCCTGAGCAGGGGCATTGGATGGCAGGGAATTGGTCTGCTATTTGACGGTCTATTTGGTACAGTGAGTGGTTCTACAGTCTCTGTGGAGAATGTTGGTCTCCTTGGATCCACCAGGATTGGAAGCAGAAGAGTGATCCAGATCTCTGCTGGTTTCATGATCTTCTTCTCCATCCTAGGGAGATTTGGAGCACTCTTCGCATCGATTCCATTCACACTGTTTGCCGCTATATACTGCGTGTTGTTTGGCTATGTCGGAGCTGTGGGGCTCTCTTTTATGCAGTTCACCAACATGAACTCGATGCGCAACCTCTTCATCATCGGCATCTCACTCTTCCTTGGCATCTCCATCCCAGAGTACTTCTTCCGGTTTACAATAAGTGCTCAGCATAGCCCAGCACACACCAGGGCCGGGATGGTTCAATGACCTCATCAACACCATTTTCTCCTCACCCCCGACCGTCGGATTCATAATCTCAGTGGTCCTAGACAACACGCTGGAGGTGAGAAACAGGGCAAAGGACCGTGGGATGCCTTGGTGGGCGAGGTTCAGACGTTCCGTGGTGACAGCCGGGAACGAGAGTCTACACCTGCATTCAACCTCAC | |||||||||