| mature miRNA: TTAAACCCGGTCCGGCCCAG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73887099|gb|DT489837.1|DT489837 WS02543.B21_F04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02543_F04 3', mRNA sequence TTAAACCCGGTCCGGCCCAG EST sequence (targeted fragment marked with yellow): CAGAACCTGATTACACAAGTCAGAGTCGACGACCGGCTGCATATCAGCGGAGGATCAAGGAAAATATAGGTAGAGCTGATGGATGAGGTCCAACCCTTCTGTTGCCTGAATTGTACCTTTCAGATTTGGACATCCGAGATTTAATTGCTGGCATGTTTGAGTATTCTGTGGAAAGCGGATATGGAGGTTGAGGTTTATTTCAGTGTCAGAGAGTTCTGCTGAATATATTAATGTATACGTAGCAATACCTAATGCATTCTTCATTCGATTCTGATCAAAGCAAATATTTACATGGGTGTGTGGAATAGAGAGCAATATTGAGTCTGTTGTCTATTAGTGAATCCAAAGGTTTTAGACATTACTATAGCAACTGTGTAGCTGGAATCCTTTGAAGATCTGGTTTTGGTTAAATCCCTGATCGGATTATCCGTATCTCGAAGCATGGCCCGGTATTTGATTAATTGGATCAACTAGCTTGATGCTGCTTGTTTGTGAATTGTGACGGATTGCTGCTTTGTTGAGGTGCCGTTAAGCTGATTGGTGACAGAAGTACTCCACCACATCATAGCGCGAGATGGCATTATATTGTTTTCATATTCTACACTGGAAGTCTTGAGAATTGTATTATAATTGTTTTTCCTTGACCTGATTGCTGTCAACAAATTATTGATTTGCGAGTTTATTAATATTAGCTTTGGTGAATTCTGAGTTGAATGTTTTTTATACCTGGTCCGGTTACATGCTAGGTTGGTTAACCTGCCGTGTTGGACTGGACCGGATTTAATAATAATTGCCGAAGACTAGCTATATTATTTTCTTTGGCAAAAGAATCATTCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73874628|gb|DT477366.1|DT477366 WS02519.BR_L23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_L23 5', mRNA sequence TTAAACCCGGTCCGGCCCAG EST sequence (targeted fragment marked with yellow): GTCTTTCCTCTCCTCTCCTCTCCTCTTTCAAGCTTATCTCCTAGAAAGCATCAGATTTTCCTTTTTCAGACAAAGAGAAGAGAGAAACAATACAAACCGTACTCATCATCATCATAAAAAAAAAAAATGAACGGCAGTGATGCGTACAGTGCAACAGAGGCTCAATACGTACGGAGACACCATAAACATGAGCCTAGAGAGAACCAGTGCACTTCTGCTCTTGTTAAGCACATCAAAGCTCCTGCACACCTTGTTTGGTCACTGGTGAGGCGATTTGATCAGCCGCAGAGGTACAAGCCATTTGTGAGCAGGTGTGTTATGAACGGAGAGCTTGGGATTGGAAGTGTTAGAGAGGTGAATGTTAAATCTGGACTTCCTGCAACTACTAGTACTGAGAGGCTTGAGCTTCTTGATGACGAGGAGCACATTCTTGGAGTCCAGATTGTTGGTGGTGATCACAGGCTCAAGAACTACTCATCAATTATGACTGTCCACCCTGAGTTTATTGATGGGAGGCCTGGAACTTTAGTCATAGAATCATTCATTGTAGATGTGCCTGATGGGAACACCAAGGATGAGACATGTTACTTTGTCAAGGCCCTTATAAGGTGCAATCTCAAATCTCTGGCTGATGTCTCTGAGAGGATGGCTGTGCAGGACCGGGTTGAACCTGTCAATCAATTCT | |||||||||
gi|73886552|gb|DT489290.1|DT489290 WS02538.B21_N03 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02538_N03 3', mRNA sequence TTAAACCCGGTCCGGCCCAG EST sequence (targeted fragment marked with yellow): CTGGATGACGAGGAGCACATTCTGGGAGTCCAGATTGTTGGTGGTGATCACAGGCTCAAGAACTACTCATCAATTATGACTGTCCACCCTGAGTTTATAGATGGGAGGCCTGGAACATTAGTCATAGAATCATTCATTGTAGATGTGCCTGATGGGAACACCAAGGATGAGACATGTTACTTTGTCAAGGCCCTTATACGGTGCAATCTCAAATCTCTGGCTGATGTCTCTGAGAGGATGGCTGTGCAGGACCGGGTTGAACCTGTCAATCAATTGTGAGTAGTAAGGTCCTGGAGGTGCAATGGGAGATTGATAAGTAAAAGCTATGCCGTTTGACTGATCTAGTTTCCCGAAGCTTTGTAGAGTTTGGTTGGAGTACTTCCTACCCGCAGAAGTTTTGAATGCAATGGTTCTGCCGTTGTTCTCTTTGCATTATTCCTTAACATTGGAATGGGGTTTTCCCTGTTTAGTGTTTAGGTTTGTAGTCAAGTTTCCTTAAACATCCGGTGGGAAAGGATCAGTTGTTTTTCAATGTTGTTTTTACTTTATGAATGGTGGTATGTAAATTGCTGCTGGTCATATCTGTAAATACACTTGTAAGACACAGTCGGTTCCTTTTGGATAGGGTTTTATGTTGTAGTTGCCGCTCGCAGTGTAGGATGTTATGATAGGGAAGAACTTGAAGTAGCAGTTAGCAGCTGTTGTTTCTTTTTTCAGCATGCTTTTTTGTTTTGCTTTCAGCGCAATATTGACGCTCTCCTATCTCCCTAACATCCAGCCAGAACAATCCTTGCCACTATTTTATGTGGAGCTTATTGTGACAGCAGCTTTTGAGTGCAAGAAAGTGCTGATTATCCTTCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73879691|gb|DT482429.1|DT482429 WS02519.B21_M19 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02519_M19 3', mRNA sequence TTAAACCCGGTCCGGCCCAG EST sequence (targeted fragment marked with yellow): TCAGCCGCAGAGGTACAAGCCATTTGTGAGCAGGTGTGTTATGAACGGAGAGCTTGGGATTGGAAGTGTTAGAGAGGTGAATGTTAAATCTGGACTTCCTGCAACTACTAGTACTGAGAGGCTTGAGCTTCTTGATGACGAGGAGCACATTCTTGGAGTCCAGATTGTTGGTGGTGATCACAGGCTCAAGAACTACTCATCAATTATGACTGTCCACCCTGAGTTTATTGATGGGAGGCCTGGAACTTTAGTCATAGAATCATTCATTGTAGATGTGCCTGATGGGAACACCAAGGATGAGACATGTTACTTTGTCAAGGCCCTTATAAGGTGCAATCTCAAATCTCTGGCTGATGTCTCTGAGAGGATGGCTGTGCAGGACCGGGTTGAACCTGTCAATCAATTCTGAGTAGTAAGGTCCTGGAGGTGCAATGGGAGATTGATAAGTAAAAGCTATGCCGTTTGACTGATCTAGTTTCCCGAAGCTTTGTAGAGTTTGGTTGGAGTACTTCCTACCCGCAGAAGTTTTGAATGCAATGGTTCTGCCGTTGTTCTCTTTGCATTATTCCTTAACATTGGAATGGGGTTTTCCCTGTTTAGTGTTTAGGTTTGTAGTCAAGTTTCCTTAAACATCCGGTGGGAAAGGATCAGTTGTTTTTCAATGTTGTTTTTACTTTATGAATGGTGGTATGTAAATTGCTGCTGGTCATATCTGTAAATACACTTGTAAGACACAGTCGGTTCCTTTTGGATAGGGTTTTATGTTGTAGTTGCCGCTCGCAGTGTAGGATGTTATGATAGGGAAGAACTTGAAGTAGCAGTTAGCAGCTGTTGTTTCTTTTTTCAGCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73882625|gb|DT485363.1|DT485363 WS02528.B21_A06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_A06 3', mRNA sequence TTAAACCCGGTCCGGCCCAG EST sequence (targeted fragment marked with yellow): CCATCTGAAGAGGATCTAAAGATCTGCCCACATAGTTTCGAGTTTCGGCTAAGGGTGTGTTTGACGGTAGAAGGGAATCTAACCATGATATCGCGCATCAGGAATATCAATTGCAAGCCATTTAGTTTCTCAATTGCTTTCCATACATATTTCTCCATCTCAGATATCAGTGAAGTAAGAGTAGAGGGGTTGGAAACTCTTGACTATCTTGACAACCTTTTCCAAAGAGAACGCTTCACAGAACAAGGAGATGCCTTGACATTTGAATCTGAGGTGGACCGGGTTTACCTTAGTTCTTCAGATGTGATTGCTGTTTTTGATCATGAGCAAAAGAGGACATTCACCATACGAAAGGAAGGACTTCCAGATGTTGTGGTTTGGAATCCATGGGAGAAGAAATCCAAGTCCATGGTAGATTTTGGAGATGAAGAGTACAAACAGATGCTTTGTGTTGATGGGGCAGCAATTGAGAAGCAAATTACATTGAAGCCAGGTGAGGAGTGGACAGGCAGGCTAGAGCTCTCTGTTGTGCATTCAGGATGATGAAGTTGCTACCCACTTGAAATTAAAATCGTTGATGAAAGGCATATTATACAAATAAGCCACTTAATATTTGCATGCTGGCCCGTACGATTATACAAATATTTATTTCATTCTGTAGTTCTTGTGCAGAAAATAAAACCCATAGTCACTAATTTCTGGTGTGGTGGCTGGTAGTCTGAGTGGAGATATTTGTTTTATTGTTTCTCCATTGTAGCAATTACCAAAAAATGAAGTGCATCAAACATATGTACCCCCAAGAATTGTATATACTTAATTACAAGATTAATGGCTAAAAAAAAAAAAAAAAAA | |||||||||