| mature miRNA: TTACTCCCTCCGTCCCATTGA species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|35981239|gb|CA271544.1|CA271544 SCBGLB2074F02.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBGLB2074F02 5', mRNA seq TTACTCCCTCCGTCCCATTGA EST sequence (targeted fragment marked with yellow): CGGACGCGTGGGCGGACGCGTGGGCAAATTTTTTGTATAAATATCATTTATTTTGTTATGACTTATTTTATCATTAGAGATACTTTAATAATGATTTATTTATTTTATAATTTACACAAAATTTTTAAATAAGACGAACAGTCAAACACGATGTCTAAAAGTAAAAAACGTCACTCTTTTTGGGACGGAGGGAGTATATAACTTTTAAGTTATTTAGTTTATGATTGCTGTGTCTTGCTTTATCGGCTACTGTTTTTTTAATTTTCATGCTATAAAATGGTGGAATTGCCTGTGGAGTTACATGAATGCTTTCTACTGACTTTAGTTGAGATGTGTGCCAATGTATTAGGTCCAATTCCACTTGCTATACCATCTTTTTTCCTTATTTTACTGGGGATTGTTGTTGTTGAATAACCTGCTGATAATACTGCTCCTTCTTTTGTGCTTTTATAATCTGCCAGAGGTAACTAGTTAACTATAAAATCTGAGAGGATGCTACCATGTGAATTATGTTGTTCCTTTTTCCTAATTGGGTAAAATGCGCTAATGGTTTCCTATGCCTAAAATTGAATTTTGAGTTGACTATGTTTCTTATTGCGATGTTTGGGGCACATAAGTATAGTGCTTCTATTAACTCTTGGGGGAGGCTAAAATCTTCGGGGTAATTAATGGGTTG | |||||||||
gi|36005920|gb|CA279694.1|CA279694 SCCCFL8002D03.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCCCFL8002D03 5', mRNA seque TTACTCCCTCCGTCCCATTGA EST sequence (targeted fragment marked with yellow): ATAGAATATCGTTTTAGAGTATCCAGTGCAGCAGTTTTTACTCTATATTCATACTCTAAAGAAAGTATTATTTTAGGGTACCCGCTGCCGGCATGTGGGCGCGCACAGCTTTCCATGCAGCGCTAGTCGACCCGTCCCTTTCGCCCTGCTGGACTGTGAGGCTGCCGCCGATTGCTGAATGCGATTGGGCGCTATCAGAACAACGCCGGATCAAAAGTCACAAAAAAAAAAACAACGCCGGATCAAATTGCCATCACAAAACAGAAGTCTTTCTCACCTTCCCAGAAGTCAACTTTTTTTTAACTTTAACCAATTATATATAAAACAATATTAATATTTATAATATATAATTAGCATAGTTAGGTAGATCGTTGAATATATTTTCATAATAAACTTATTTGAAGATATACATGCTGTTTTTCTGCAAAGTTAGTCAAAATTAAAAAAGTTTGACCTACACGCGTTCCATGGTGACTTTCTTTCTAGGACGGAGGGAGTAATTCTTAAAAAAAAAAGGAAGGGGGTTCTACGTGGTATTGAATCATTCTGCGTGCCACTATATTAAACCTAAGCTAACAATCCGGGGTATAATTAATGGTATGGGACATATAGCATTGGTGAGTTTTCTTCTTCTTTTAAACATAATTAGGAGCTTCTCCTGCGGGTTGCTTAAACAAAGCTGA | |||||||||
gi|36018439|gb|CA283628.1|CA283628 SCSBSD1057C05.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCSBSD1057C05 5', mRNA seque TTACTCCCTCCGTCCCATTGA EST sequence (targeted fragment marked with yellow): AACAGTAATACTGTCAGTAGAGCTCTGTACTACTCCCTCCGTCCCATTGAAAGTGTCGCCCGGGAAACGTGTTTGTGAGGGGGGCACGCTTTTCCAACGACACTTTCAATGGGACGGAGGGAGTAGGCCGAGAACTCAAACCACAAAAATGTCAGAGGCAGAGGCCGTGCGTGTGATCGGCCTATGGCCGAGCCCGTTCGTGATCCGCGTCCTGATCGCGCTGAAGCTGAAGGGCGTCAAGTACGAGTTCGTGGAGGAGGTGGTGGGCAAGAAGAGCGAGCTGCTGCTCAGGTCGAACCCGGTGCACAAGAAGATCCCCGTACTGCTCCACCACGGCAAGCCCATCTCCGAGTCTCTCATCATCGTGCAATACATCGACGAGGTGTGGTCCTCCGACGCGCCGGCCTTACTCCCCGTCGACCCTTACACCCGTGCGGTCCATCGGTTCTGGGCACAGTACGTCGATGACAAGGTCCCTTCAGCGATCCGCATACTCATGGGAACGGATGACGAGGGCAAAGACGAAGCGGCGGTGCAACTGTCCGCTGCCCTGCAACTGTTGGAGGAGGCTTTCGCGAACTTCACCAGGGGGAGCACTACTTCGGCGGC | |||||||||
gi|268781594|gb|DN194407.1|DN194407 SUM01-008F-E11-083.b Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 TTACTCCCTCCGTCCCATTGA EST sequence (targeted fragment marked with yellow): TGACAATTTTGGATGAGCTTCTGCCTATCTCCATTGAGATGGCGAAACGGGACTGCAGAGGAATATGGAACTTCACCAACCCTGGTGTCGTTAGCCACAATGAGATTCTAGAGATGTACAAGAAATACATCAATCCTGATTTCAAGTGGACCAACTTCACACTCGAAGAGCAGGCCAAGGTCATAGTCGCACCTAGAAGCAACAACGAGATGGACGCGTCGAAATTGAAGGCTGAGTTCCCTCAGCTGCTGTCCATCAAGGACTCTTTGATCAAGTATGTCTTTGAGCCAAACAGGAAGGTTCCTGTTAATTGAGGATTTAGGTCACGGGGATGTGGAGGTTATTTGTATTGGTTGTTATTGGACACTAAATTAGCTAATGTTGCATGGTGGTCCGTACTAGTTGTGTTCGATTCTTTTGGGACAATAGCAAGCATACCTTTTTCTCGTCGTTGTTATATACTCCTCTGTCCCTTAACATGTGTCTGTAGAAAACCATGTTTCCCTCACAAACACGCTTCTCGGGCGACACTTAAAAGGGGCGACACTTAAAAGGGACGGAGGGAGTACGCAACCTGTTTGTACAAACAGGTACATATTTAGATGTTCTATATAGTGGCTGATATGCCGAGACACTGTTATCGATGAACACTACGAAT | |||||||||