| mature miRNA: TTAGATGACCATCAACAAAC species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|78342710|gb|DT562984.1|DT562984 EST1073624 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TTAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): GTTTGTTATTGTTCATCTAAGTCCAAGGAGCGGTAGCTGCAAGGTTATGGGGAAGAAGCTAGACGCGTTGCTTGGAAGAGGGTTCAAGCCCTACAAGTTGAAATCACTTATTAGTGTTGCCCTTTCTCGTCTTTCCGTTTTCAAGAATCGGCGTCAGATTCGCAGCAACCAAGCTCGCTCTGATGTTGTGGAGCTCCTTCAGCTCGGCCACCATGATCGTGCTCTTCTTAGAGCGGAGCAGGTGAAGGAGCAAAACATGTTGGACGTGTTTGTTATCCTGGAAGGGTATTGTAATCTCCTCATTGAAAGACTCCATCTCATTGAGGAAGACAGAGAATGCCCTGATGAGCTGAAGGAGGCAATATGTGGCTTGCTCTTTGCATCTTCAAGGTGTGGAGATTTTCCCGAGCTTCAAGAGATTCGTGCAATCTTCACGTCTCGCTATGGCAAAGAATTCGTTGCTCGTGCCATTGAGTTGCGCAACAATTGTGGAGTCAACACTAAGATTATACAGAAACTCTCAACCAAACAACCAGACTTGCAGAGCAGATGGAATGTGCTCAATGAGATTGCTGCTGAGCATAGCATTGCCCTACAACTCCGTGAAACCTCTGTTTCCGCTACCCAGGAAAATTTGGACGGAAGCAAGAATCATAGCCAGCCCAAGTTAGGCACAATAGGTAAGGCAAGTAACCATGCAGTCCTAGGAGATGACAACGAGTTCTCTGATTCAACAAAAGCAAGGAAAAAATATAAGGATGTAGCTGATGCCGCTCAAGCAGCCTTTGAGTCTGCTGCAAATGCGGCCACAGCAGCAAGAGCAGCCGTGGAACTCTCTCGTTCTGATTTCCATGATCCTGATGATGATGATCATGATGATGATCAAAACAGTCCCAATAGTCAAAGAAAAGAGTGCTTGAGAGAGAGGAACCAAATTCTGAGATAAAGAAC | |||||||||
gi|193217749|gb|EY197082.1|EY197082 G09_P-20_070 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA seq TTAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): CGAGTTAAATCAACTTATTCTCTTGATTTTACATGCAAGATTGGATATGCTCTTTCTGTTTTCATGAAAATGCATTGTTGAATGTGTTTGTTTATGGTCATCTAAGCCATTTTTCATCTCGCCAATTCTTTGTTCAAGCAGTTTTTGGATAATCGAACCGATAGACTACACCCGCAGAAATGATGTTTAGATGACCATCAACAAACAACTTCCTCTTATTGCATCAAGTGTTTATTTAAGGTTTTGTTACGGTTTAAAACCACCTTTTCTTTTTCAATCAACATTCTTCCCATCTCTACAAAAGTTCGAGTGCCAAATCTTACCATAAAGGTGAAATCAATAATTTTATGTTGGGGGCCGGAGTATAAAGGAGACGAAGGGAAACTGTAATATGGGATGAGCTATTTTGCGGTTGTTATTCTCTTTGGTAAACTGNTTTACACTTGCGATAAACACGACACGAAAGAAAACATGTCATGATTGCCGAAGAACTTGGNTTCAGTGAAGCAATTCAGAACTGAAAAAAGGTCCATTTTGCAGGTACACACGTGGCGGCAGGTACAGGGAAGGCGGTACGCGCAGAGGCTAGTTCCCGAGTCGTGTAGTGGCTGGAGTTGTGCTGGAGGCGGCGACTGCTATTTTTCTCTGCTAGGGGTTCCTTTTTCCTTTTCCTTTTTTGGCTAGGGTTAGTTGGGTTAGTGGGGCTGNTTGGGTATANGCTATGGGGTAAAGCTGGGCCGGGATGGGNTTTTGGATTGACATAATGGATTATTAGTTGGNTGGTTTAATTTTTTTATGCAGCCGGCC | |||||||||
gi|109864776|gb|DW493752.1|DW493752 GH_RMIRS_098_E12_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TTAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAACTTGGGGTTGTACGACAACCAATATCCACTGCAGATATTTCCTCATCTTCCACAGCCACATGGTTTAAGTGTACATCAGTATTTGCTATAGAACACCTAGATTTAAAGCTGTCAAAACTGTACCTACGGTTAGTAGAAGAAGAGGAGTTGAGACTCAACCATCGGCTAGAAGAGAAGCGATAGCGAATTCTAGAAGCAGTTTGTCTCGATATAGAGGCTTCTCTTCCGGTAACAGAGCAGTAAAACAGATTGAAAGAGAGCTGAGGGTTTGTAATTGCGACCATTGCCATCCTAATGTTTGCTGTTGGTTATTTAATTTGTTCTTATTCTTCAAATGCCCAAATTTTAAGCACCGATAATCACTTTCGAAATCTTCCAGACTCATGCAGACTTGAATAAGCAAATTGAATAAAAAAGAATAGCTTCCACTGTTGGGTTAGTTTCTCCGACACCAAATGGTATATGGGTTTAGCTTCAAAAAATTTTAAAAAGAAACAAAAATTGGAACTTGGAACTTGGAAGGTACCTAAATGAAATGGTTCGGTTTTGCTCTCTGGGTTTAGCTTCAAATGAATCAAAAAAGAGCCTCTTCTTCTTCTTAAAGAAAAAGAGGACGCTTCGGATTTGTGGCGTGTAAAAACAATGTGGGTTTTGGTTGAACAAAAAATTT | |||||||||
gi|109847886|gb|DW476866.1|DW476866 GH_RMIRS_005_D08_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TTAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): TCTCTTGATTTTACATGCAAGATTGGATATGCTCTTTCTGCTTTCATGAAAATGCATTGTTGAATGTGTTTGTTTATGGTCATCTAAGCCATTTTTCATCTCGCCAATTCTTTGTTCAAGCAGTTTTTGGATAATCGAACCGATAGACTACACCCGCAGAAATGATGTTTAGATGACCATCAACAAACAACTTCATCTTATTGCATCAAGTGTTTATTTAAGGTTTTGTTACGGTTTAAAACCACCTTTTCTTTTTCAATCAACATTCTTCCCATCTCTACAAAAGTTCGAGTGCCAAATCTTACCATAAAGGTGAAATCAATAATTTTATGTTGGGGGCCGGAGTATAAAGGAGACGAAGGGAAACTGTAATATGGGATGAGCTATTTTGCGGTTGTTATTCTCTTTGGTAAACTGTTTTACACTTGCGATAAACACGACACGAAAGAAAACATGTCATGATTGCCGAAGAACTTGGTTTCAGTGAAGCAATTCAGAACTGAAAAAAGGGTAAGATTCTTTTGTTCTTCATGGAGTGAAACTCCCAGCTACTTGTCTCTTTTATATTATCTTAGCCTTTCCAATGTCTTCTTTTTTTTTGGAACTTCCAATGCTTTGTTGTCTCGTCCTCTGCCTGATG | |||||||||
gi|78353790|gb|DT574064.1|DT574064 EST1084704 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TTAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): CTTTTGTTTGTTATTGTTCATCTAAGTCCAAGGAGCGGTAGCTGCAAGGTTATGGGGAAGAAGCTAGACGCGTTGCTTGGAAGAGGGTTCAAGCCCTACAAGTTGAAATCACTTATTAGTGTTGCCCTTTCTCGTCTTTCCGTTTTCAAGAATCGGCGTCAGATTCGCAGCAACCAAGCTCGCTCTGATGTTGTGGAGCTCCTTCAGCTCGGCCACCATGATCGTGCTCTTCTTAGAGCGGAGCAGGTGGTGAAGGAGCAAAACATGTTGGACGTGTTTGTTATCCTGGAAGGGTATTGTAATCTCCTCATTGAAAGACTCCATCTCATTGAGGAAGACAGAGAATGCCCTGATGAGCTGAAGGAGGCAATATGTGGCTTGCTCTTTGCATCTTCAAGGTGTGGAGATTTTCCCGAGCTTCAAGAGATTCGTGCAATCTTCACGTCTCGCTATGGCAAAGAATTCGTTGCTCGTGCCATTGAGTTGCGCAACAATTGTGGAGTCAACACTAAGATTATACAGAAACTCTCAACCAAACAACCAGACTTGCAGAGCAGATGGAATGTGCTCAATGAGATTGCTGCTGAGCATAGCATTGCCCTACAACTCCGTGAAACCTCTGTTTCCGCTACCCAGGAAAATTTGGACGGAAGCAAGAATCATAGCCAGCCCAAGTTAGGCACAATAGGTAAGGCAAGTAACCATGCAGTCCTAGGAGATGACAACGAGTTCTCTGATTCAACAAAAGCAAGG | |||||||||
gi|84167318|gb|DR455966.1|DR455966 CM039G09 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TTAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): GTTTGTTATTGTTCATCTAAGTCCAAGGAGCGGTAGCTGCAATGTTATGGGGAAGAAGCTAGACGCGTTGCTTGGAAGAGGGTCAAGCCCTACAAGTTGAAATCACTTATTAGTGTTGCCCTTTCTCGTCTTTCCGTTTTCAAGAATCGGCGTCAGATTCGCAGCAACCAAGCTCGCTCTGATGTTGTGGAGCTCCTTCAGCTCGGCCACCATGATCGTGCTCTTCTTAGAGCGGAGCAGGTGGTGAAGGAGCAAAACATGTTGGACGTGTTTGTTATCCTGGAAGGGTATTGTAATCTCCTCATTGAAAGACTCCATCTCATTGAGGAAGACAGAGAATGCCCTGATGAGCTGAAGGAGGCAATATGTGGCTTGCTCTTTGCATCTTCAAGGTGTGGAGATTTTCCCGAGCTTCAAGAGATTCGTGCAATCTTCACGTCTCGCTATGGCAAAGAATTCGTTGCTCGTGCCATTGAGTTGCGCAACAATTGTGGAGTCAACACTAAGATTATACAGAAACTCTCAAACAAACAACCAGACTTGCAGAGCAGATGGCATGTGCTCAATGAGATTGCTGCTGAGCATAGCATTTGCCTACAACTCCGTGAAAACTCTGGTTCCGCTAACCAAGAAAATTTGGACGGAACAAA | |||||||||
gi|78352026|gb|DT572300.1|DT572300 EST1082940 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TTAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): ATTGGATAAATAATAATTGCTGGCTGAGAATTTCCAATTTTTCGTTCCACCTTTCGTCAATTATCTCAAAGGAAAAGTAAATCACTGAAAAACCCATTTTTTTCTTTTAAAAAGCATATCTTTCTCTACAAATCTATTTTCCTTCAATTACCCAAACTCAGATTCCAATTCAAAGAGTTCCATAAATAAAAAAAGTTCCTTTTTTTTGTACTTCTCTTGCTTTTCATTGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTATTTTATTTAATAATTTTTGTTCGTTGATGGTCATCTAAATTCATTTCGAACTATATAAGACGAGAGTAACTTGTACTTGTTTCATCAGTTAAAAGATGGTTGCCTTTGGGAAGAAGTTGAAGGAAAGACAAATTCAAGAATGGCAAGGATTTTACCTAAACTACAAATTAATGAAGAAGCGAGTCAAACAGTATGCTCAACAAATGGAAGTTGGGACACAAGATCGCCGACATGTTCTCAAGGATTTCTCGAGAATGTTGGATAATCAGATTGAGAAGACTGTCCTTTTTATATTGGAGCAACAAGGCCAACTTGCAAGCAGGTTAACAAATCTTAGAGAACAACATGATGCACTCGAGGAGATGCCGGAAATATCCCAAATAACAGAACTTAGAGAGGCTTATAGAGCAGTCGGACAAGATCTGTTGAAGCTTCTCTGTTTTGTTGAAATGAACGCTATTGGTTTGCGAAAGATATTG | |||||||||
gi|109847887|gb|DW476867.1|DW476867 GH_RMIRS_005_D08_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TTAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAACAAAGCATTGGAAGTTCCAAAAAAAAAGAAGACATTGGAAAGGCTAAGATAATATAAAAGAGACAAGTAGCTGGGAGTTTCACTCCATGAAGAACAAAAGAATCTTACCCTTTTTTCAGTTCTGAATTGCTTCACTGAAACCAAGTTCTTCGGCAATCATGACATGTTTTCTTTCGTGTCGTGTTTATCGCAAGTGTAAAACAGTTTACCAAAGAGAATAACAACCGCAAAATAGCTCATCCCATATTACAGTTTCCCTTCGTCTCCTTTATACTCCGGCCCCCAACATAAAATTATTGATTTCACCTTTATGGTAAGATTTGGCACTCGAACTTTTGTAGAGATGGGAAGAATGTTGATTGAAAAAGAAAAGGTGGTTTTAAACCGTAACAAAACCTTAAATAAACACTTGATGCAATAAGATGAAGTTGTTTGTTGATGGTCATCTAAACATCATTTCTGCGGGTGTAGTCTATCGGTTCGATTATCCAAAAACTGCTTGAACAAAGAATTGGCGAGATGAAAAATGGCTTAGATGACCATAAACAAACACATTCAACAATGCATTTTCATGAAAGCAGAAAGAGCATATCCAATCTTGCATGTAAAATCAAGAGAATAAGTTGATTTGCTCCAAACCTGCAAGTT | |||||||||
gi|164328769|gb|ES803497.1|ES803497 UFL_510_01 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TTAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): GGCACGAGGCTGAGCGAATGAGCCCATGTTGCTGACCTTATACTCAGTTTCCCCAATGAAAGACCAGTCATTGTCCTTTCTGCCATGGGAAAGACTACCAATAAACTTTTGCTGGCCGGAGAAAAAGCTGTTAGCTGTGGTGTCACTAACGTAGATGCCATAGAAGAGTTGAACTTTATAAAAGACTTGCATCATAGGACGGCTGATGAGCTTGGAGTGGAAAGGTCGATTGTTGATGGTCACCTAGAAGTATTGGAGCAGCTCTTAAAGGGAATTGCTATGATGAAAGAGTTAACATTACGAACAAAAGACTATTTAGTTTCGTTTGGAGAGTGCATGTCTACAAGGATTTTTGCAGCATATTTGAATAAAATTGGTGTTAAGGCCCGTCAATATGACGCCTTTGAAATTGGTTTCATTACCACTGATGACTTCACAAATGCTGATATTTTGGAAGCAACTTACCCAGCTGTTGCAAAAAGATTAAATGATGATTGGATCAGTGATCCTGCAATCCCAATTGTCACTGGATTCCTTGGAAAGGGGTGGAGATCTTCTGCAATTACCACTTTAGGAAGGGGTGGTAGTGATTTGACAGCCACAACCATCGGAAAAGCATTGGGGTTACGAGAAATTCAGGTATGGAAAGATGTTGATGGTGTTTTGACCTGTGACCCTAACATATATCAACATGCAGAACCTGTCCCGTACCTGACTTTTGAAGAGGCAGCTGAACTTGCTTACTTTGGTGCTCAGGGTCTGCATCCGCAATCTATGAGGCCAGCTAGAGAGGGTGATATTCCTGTCAGGGTTAAAAATCCTTTACATCCTAAATGCTCCCCGAACTCTCATCACCAGGAAATAGAGATATGAGTAAGGCAATACTTGACAGCCTCCTTTTTGAAGAAGAATGTCCCCATGCCTGAATATGGCAGGAACCCCCATGCTTGGGTCAATTTGGGCTTTCTGGCAAGGGATTTTCCGATCTTGGAAAAATTTAGGTTCTCAGGGGAAGGTTGGAACTACCTAGGGGGGGCCAGTCTTTCTTTGAATTTGGATTCCATCAAAATTTTGGAACCAAAAAGTTAATTTCGCCAGGGAACTTTGACCCTTGTGGGAAAAAAAAATCCCAAAAAAATTGCCCGTTGGTCAAATCTTTTTTCAACCAAAATTCTTTTTATTTTTCTCCCCTTTGGGGGAATGGCCCCAAAAAACCCCCCCCTTTTTTCTTTTTGAAAAAAGGGCTTTTTCCCCCCGGGTTTTAAGGGGACCAACAGGGGGGGGGGAAGAAGTTTTATAAAAAAAGTTATTTTCTCCTCGGGGGGG | |||||||||
gi|109891508|gb|DW520471.1|DW520471 GH_TMIRS_240_H12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TTAGATGACCATCAACAAAC EST sequence (targeted fragment marked with yellow): TATCAACATATTCTCTTGATTTTACATGCAAGATTGGATATGTTCTTTTTCTTTTCATGAAAATGCATTATTGAATGTGTTTGTTTATGGTCATCTAAGCCATTTTTCATCTCGCCAATTCTTTGTTCAAGCAGTTTTTGGATAATCGAACCGATAGAATACACCCGCAGAAATGATGTTTAGATGACCATCAACAAACAACTTCATCTTATTGCATCAAGTGTTCAAGATTTAAGGTTTTGTTACGGTTTAAAACCACCTTTTCCAATCAACATTCTTTCCATCTCTACAAAAGTTTCGAGTGCCAAATCTTTCCATAAAGGTGAAATCAAGAATTTTATGTTGGGGGTCGGAATATAAAGGAGACGAATGGGATGGAGTTGGAAGTGACTGGAGATTCAAATCGAAACTGTAATGGGATGAGCTATTTTGCGGTTGTTATTCTCTTTGGTCAACTGTTTTACACTTGCGATAAACACGACACGAAAGAAAACATGTCATGATTGCCGAAGAACTTGGTTTCAGAGAAGCAATTCAGAACTGAAAAAAAGGGTAAGATTCTTTTGTTCTTCATGGAGTGAAACTCCCAGCTACTTGTCTTAGCTCTTTGATATTATCTTAGGCTTTCCAATGTTTCCTTTTGTCGGAACTTCCAATGCTTTGTTTGTTCAAACTGAAGATGGATTAAGTGTCATCAGTTGAAGTATATCAATCTATCTATCTGTCTATCTATATATATG | |||||||||