| mature miRNA: TTAGATTCACGCACAAACTCG species: Theobroma cacao database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|212316441|gb|CU620723.1|CU620723 CU620723 STEMS_KZ0AAA Theobroma cacao cDNA clone KZ0AAA5YN12FM1, mRNA sequence TTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): CGGGGGTAAGACAAGAGGAAAAGCTTGGAGCCATGGGGCTCTCAGCTCTTGTCTTACGGACCAGTTATAGCTCCGAACTGGAGCTATAATCAAGAAAGCTGGCACGGGATTTGCCGGCACTTCGTCAAGAAAGATTGAATGCCTGATCAATTGATCTAATACTCTTTTTTTGTGTCTGGGTGTAGTAATACTTTTCCAAGTATGAAATCTGCAGATCCGGGGCTGACCAAGAAAGCCAACCCAAACCAAGCACGCTCAAGAGTTTGTGCGTGAATCTAATGTGTCAAAGACAGTTTGTGCGTGAATCTAATGCTTCAGAATTTCTACTATTTAAGCTCTATACTGGGTTTCGTCTGTGCAGCCTGGGGATCAGATCATAACTTAGACGTCCTCGTCTGCAATTCTCTTGCCGCCAAAACTTTGGGTTTTGGTGATTTCAAAGAGGAATTTTGTTTGTGTTGGACACTAATCGAAACAAGCAGGACGTATAGGTTACCATTCCAAAGCAAAAATGAGAAATGAAGAAAAAAAAAAGTAGTATGTCTATTTGATTATGTATGTACTTTCAGCTTTTGCTAAAAAAAAAAAAAA | |||||||||
gi|211986541|gb|CU592597.1|CU592597 CU592597 SEED34I_KZ0AAH Theobroma cacao cDNA clone KZ0AAH15YK02FM1, mRNA sequence TTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): CGGGGGTAAGACAAGAGGAAAAGCTTGGAGCCATGGGGCTCTCAGCTCTTGTCTTACGGACCAGTTATAGCTCCGAACTGGAGCTATAATCAAGAAAGCTGGCACGGGATTTACCGGCACTTCGTCAAGAAAGATTGAATGCCTGATCAATTGATCTAATACTCTTTTTTTGTGTCTGGGTGTAGTAATACTTTTCCAAGTATGAAATCTGCAGATCCGGGGCTGACCAAGAAAGCCAAGCCAAACCAAGCACGCTCAAGAGTTTGTGCGTGAATCTAATGTGTCAGAGACAGTTTGTGCGTGAATCTAATGCTTCAGAATTTCTACTATTTAAGCTCTATACTGTGTTTCGTCTGTGCAGCCTGGGGATCAGATCATAACTTAGAAGTCCTCGTCTGCAATTCTCTTGCCGCCAAAACTTTGGGTTTTGGTGATTTCAAAGAGGAATTTTGTTTGTGTTGGACACTAATCGAAACAAGCAGGATGTATAGGTTACCATTCCAAAGCAAAAATGAGAAATGAAGAAAAAAAAAAAGTAGTATGTCTATTTGATCATGTATGTACTTTCAGCTTTTGTTAATTGAATCATGCTACTTTTAAGTTTGTAATGGATCTATAGTCTGTAAGCTTGATGAACAGTTTATGCTTTTTGTGCCTCCAATTGAAAGAGTGGTGTTTTGACTTCTTAAAAAAAAAAAAAAAA | |||||||||
gi|212128685|gb|CU577846.1|CU577846 CU577846 MONILIOP_KZ0AB Theobroma cacao cDNA clone KZ0AB5YH05FM1, mRNA sequence TTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): CGGGGAAAGATTGAATGCCTGATCAATTGATCTAATACTCTTTTTTTGTGTCTGGGTGTAGTAATACTTTTCCAAGTATGAAATCTGCAGATCCGGGGCTGATCAAGAAAGCCAAGCCGAACCAAGCACGCTCAAGAGTTTGTGCGTGAATCTAATGTGTCAGAGACAGTTTGTGCGTGAATCTAATGCTTCAGAATTTCTACTATTTAAGCTCTATACTGTGTCTCGTCTGTGCAGCCTGGGGATCAGATCATAACATAGAAGTCCTCGTCTGCAATTCTCTTGCCGCCAAAACTTTGGGTTTTGGTGATTTCAAAGAGGAATTTTGTTTGTGTTGGACACTAATCGAAACAAGCAGGATGTATAGGTTACCATTCCAAAGCAAAAATGAGAAATGAAGAAAAAAAAAGTAGTATGTCTATTTGATTATGTATGTACTTTCAGCTTTTGTTAATTGAATCATGCTACTTTTAAGTTTGCAAAAAAAAAAAAAAAA | |||||||||
gi|212128685|gb|CU577846.1|CU577846 CU577846 MONILIOP_KZ0AB Theobroma cacao cDNA clone KZ0AB5YH05FM1, mRNA sequence TTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): CGGGGAAAGATTGAATGCCTGATCAATTGATCTAATACTCTTTTTTTGTGTCTGGGTGTAGTAATACTTTTCCAAGTATGAAATCTGCAGATCCGGGGCTGATCAAGAAAGCCAAGCCGAACCAAGCACGCTCAAGAGTTTGTGCGTGAATCTAATGTGTCAGAGACAGTTTGTGCGTGAATCTAATGCTTCAGAATTTCTACTATTTAAGCTCTATACTGTGTCTCGTCTGTGCAGCCTGGGGATCAGATCATAACATAGAAGTCCTCGTCTGCAATTCTCTTGCCGCCAAAACTTTGGGTTTTGGTGATTTCAAAGAGGAATTTTGTTTGTGTTGGACACTAATCGAAACAAGCAGGATGTATAGGTTACCATTCCAAAGCAAAAATGAGAAATGAAGAAAAAAAAAGTAGTATGTCTATTTGATTATGTATGTACTTTCAGCTTTTGTTAATTGAATCATGCTACTTTTAAGTTTGCAAAAAAAAAAAAAAAA | |||||||||
gi|212316441|gb|CU620723.1|CU620723 CU620723 STEMS_KZ0AAA Theobroma cacao cDNA clone KZ0AAA5YN12FM1, mRNA sequence TTAGATTCACGCACAAACTCG EST sequence (targeted fragment marked with yellow): CGGGGGTAAGACAAGAGGAAAAGCTTGGAGCCATGGGGCTCTCAGCTCTTGTCTTACGGACCAGTTATAGCTCCGAACTGGAGCTATAATCAAGAAAGCTGGCACGGGATTTGCCGGCACTTCGTCAAGAAAGATTGAATGCCTGATCAATTGATCTAATACTCTTTTTTTGTGTCTGGGTGTAGTAATACTTTTCCAAGTATGAAATCTGCAGATCCGGGGCTGACCAAGAAAGCCAACCCAAACCAAGCACGCTCAAGAGTTTGTGCGTGAATCTAATGTGTCAAAGACAGTTTGTGCGTGAATCTAATGCTTCAGAATTTCTACTATTTAAGCTCTATACTGGGTTTCGTCTGTGCAGCCTGGGGATCAGATCATAACTTAGACGTCCTCGTCTGCAATTCTCTTGCCGCCAAAACTTTGGGTTTTGGTGATTTCAAAGAGGAATTTTGTTTGTGTTGGACACTAATCGAAACAAGCAGGACGTATAGGTTACCATTCCAAAGCAAAAATGAGAAATGAAGAAAAAAAAAAGTAGTATGTCTATTTGATTATGTATGTACTTTCAGCTTTTGCTAAAAAAAAAAAAAA | |||||||||