| mature miRNA: TTAGGCTTAATAGATTCGTCT species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|36007392|gb|CA280175.1|CA280175 SCVPLB2C04G06.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCVPLB2C04G06 5', mRNA seq TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): ATTAGGAAAGAGCTTAACGAGAGGAGCAAGCTTAAGAGATTGGGTACTGTGGAGGACATGGCTGCGGCTGCGGCATTCCTGGCATCTGACGATGCATCATACATTACAGGTGAAACAATCGTTGCTGCTGGAGGGACACAGTCTAGGCTGTAAATCTGGCTGAAGTTTACATTGACTTGGCTAATAATGTGTACTGGTGCCGATTGCCGCTAGGCCAAGGCACTTAAGCCCTGTTTGGTTTGGGGAGTTAAATTTGAACTCCTATCACATCGAATGTTGCGGCACATGCATGAAGTGCTAAATGTAGACTAATTGCATGCATGTTGACACAGTGTAGGGGTTTTTCACGAGACGAATCTATTAAGCCTAATTACTCTATGATTG | |||||||||
gi|166792587|gb|DV734376.1|DV734376 SUS01-119-H10-A-090.b Sugarcane mature stem library Saccharum hybrid cultivar CoS 767 cDNA c TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): ATAAAAAATCGTGCAGAAAAGACAGAGGAGAATGAGAGATGGAGCACCATGGCTGAGGATGGTGGATGGAGGACTGACAGATAGGTGGTGGGCGGAAAGGCGGAACATCCGGACGGACAGGTTTACAGGCAGAGGCCTTTCCAGTTTCGGCGTCGTCTGCCTGACACGCCGCCGGGAGATCCTCTGCTCCTTAACCTCGTCTCTTGGGCCATGTTTAGAGCGTGTTTGGTTACGGTTTGTTAAAGTTTAACACCCATCACATCAATGTTCCCTCGAATGCATGGAGTATTAAATGTAGACTAATTGTATATTTGTATGCACGTCGGCACAGATTAGGAGTAATTTACGAGACGAATCTATTAAGTCTATTAATCCAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|268803752|gb|DV548769.1|DV548769 SUM01-064-G08-A-067.g Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): CCAATCTTGACCTATTTTGTTGTCAGGTTGGTAACGCAAACGTAAACAAGGCCCTGTTTGGTTTGTTTTTGTTAAAATTTAACTCTCATCACATTAATGTTTCCTCAAATGCATAGAGTATTAAATGTAGACTAATTGCATGCATGTCGGCACAGATTAAGAGTAATTTACGAGACAAATCTATTAAGCCTAATTAGTCTAAGATTAAAAACTTTTTATCAAATAAGATAAAAGTGCTACAGTATTCGTTAAACTTTAACAAACCAAGCCAAACACCCCCTAAATTAAGCATACGGGCGTTACGATAGGAGTGATGATTTGACTAAAGTTCATTTACATTTGCGTTACTGGTGAACAAGCCATACAACACATTACTAGTTTAAATGTTTATATCTTTAAGGGTGTGTTCACTTCGTGAAAAGTAGGTAAAAAGTTACTGTAATATCTTTCGTTGTT | |||||||||
gi|268778100|gb|DN193413.1|DN193413 SUM01-039F-D08-062.b Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): CAGGGGTTCCAGTCTTGTGGTACTTATTAGAAGTCAGAAACTTGAGTTGTAGAACTCGCAAATCGGACACTTAGGGCCTGTTTGGTTGCAATGTGTTAAAGTTTAACTCACATCACATCAATGTTCCCTCAAATGCATGGAATACTAAATGTAGACTAATTGCATACATGTCGACACATATTAGGAATAATTTACGAGACGAATCTATTAAGCCTAATTAGTCCAAGATTGGAAATTTTTTGCCAAATAAGACGAAAGTGCTACAATATTCGTTAAACTTTAACTCCTCAAACCAAACACCCCCTTAACTGTTAAGATGATCTCAGATAACAGGAACGTGACTACACCAGGTACCTCAAGAGATGAGTTCGGAAAACATGATGATTGTACGAGAACCATGTACTCATTGTTGTATGTCAATATGATATTTGTGAGCTAAATATACAGTAACTATCAAGAAAAATGCTTGGCGTTGCTCCAAATCAACATTATGTAAGAAATTTTCTACACAGAAGTGATTGTAGCTTCACTCAACAGTAGTAATAGTATGCACCTAACTGTGAATGTTATCTATCAAGGTCGGC | |||||||||
gi|268777659|gb|CN609178.1|CN609178 SUL01-039F-A05-033.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): CATGCGATGGACTAGTGTTGTCCGTTTGCAAGGATCGCAAGAAATCGTAGGGCTGGAGAAACTTCCTTGGTGGAAAATGGAGGCAGCGAGCCAGCGACTGAAAGACTGAGCTGCCAGTGTTCATCAGTCCCTCTGTCATTGTTAGTTACAGCTGCTTTAGGCCCTGTTTGGTTTGCTTTTGTTAAAGTTTAACTCCCATCACATCGATGTTTTCTCAAATGCATGGAGTACTAAATGTAGACTAATTGCATGCATGTCGGCACAGATTAGGAGTAATTTACGAGACGAATCTATTAAGCCTAATTAGTCCCAGATTGAAAAATTTTTATCAAATAAGACGAAAATGTTACAGTGTTTGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAAAAAAAAAAAAAA | |||||||||
gi|268803969|gb|DV548986.1|DV548986 SUM01-073-B06-A-045.g Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): ATTAGCGAAACAAATCTATTAAGCCTAATTAATCCATCATTAGCACATGTTTACTGTGGCAACGTATTGGCAAATCATGGACTAATTTGGTTTAATAGATTCGTCTCACGAAATAGTCTCAAACTGTACAATTAGTCTATATTTAATACTCTAAATTAGTGTCAAACATCCGATGTGACAGGTTGAAAAACTCATAATGTCATAGGTCCAACAACTTGAATTAATTGATTATAAGAGTTTTACACGAGGCTAGGTATATTGATGGAGCTTAAGAGTAAAGCAATCAAAGATGATTATGTGACTAATTCTGATTTACATGCTACTACCGATCCTATAAAGCATTATCGATTGATGTTGTTGCTCCTCTGGAAGATCAGAAGACAATAAATATTATTGGTCTTAGGGTTGATGCCTTACCTTATGTTTGTCATGGACACTCTACTTTCAAGTTAGTGTGGGTATGATTTTCTTCCATCATATGGTGTCTTTGGAAA | |||||||||
gi|36014199|gb|CA282419.1|CA282419 SCCCLV1003F04.g LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCCCLV1003F04 5', mRNA seque TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): CTTGTTTTGTAGATGTTTCTCTTTGTCTATAACCTAAAATGTGTGTCAGCATATAGGTTGGCATGAATAAAGGTTCCACACATTTGTAATTAATGACTCACTATTACACTTTCCATGTGTTGATATATTTTTTATTTAGAACTTTCTGCAATTACTGAAGTTGCAAAAATTCGAACAGAAGGGGTGCACAGTGCCGAGGAGGTCGAAATGACATCGATTCAGGCCTCGTTCAGTTCTAGGGTGTAAACTTTTAGGGTGTCATGTCGGGTGTCACATGGGGGTGTCGTATAAGGTGTTCGGATACTAATAAAAAAAATAAATTACAGAATCCGTCAGTAAACCGTGAGACAAATTTATTAAGCCTAATTAATCCGTCATTAGCACATGTGTTAATGTAGCACTTTATTGTTAAATCATGAACTAATTAGGCTTAAAAGATTCGTCTCGCAAAGTAGTCACAATCTGTGCAATTAGTTATTTTTTAATCTATATTTAATATTCTATGTATATGTCCAAACATTTGATGAGATAGGGCGTAAACTTTTAGGGAGGAACTAAACAAGGGCTCAGTTGAATATTGGTCATAGCCATTGTACCT | |||||||||
gi|268779053|gb|DN193890.1|DN193890 SUM01-017F-F03-028.b Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): CTCTATCTCGCATTTGTCTTGCGGAAGCGAGGGCAACCGCCTGCCCAACGAAGAGCCAACAATGCAAACAGAGGGAAGATGTTCCTCACCGAGGGTGACATCGAGGTTCTCGGGATATAAGCATGAGTGTACCCTAGGAGATTTCGCCCTAGGAGAGCCTGCTATCAGCTTACCGATTATATGCTCCACAGACCACAGACCACATAGCATGAAAGAAAGTTGGAACATTAGGCCCGTTTGGTTTGAAGTAGTTAAAGTTTAACTCCCATCATATCAATGTGTCCCTCAAATGCATGTAGTACTAAATGTAGACTAATTGCATGCATGTCGGTACAGATTAGGAGTAATTTACGAGACGAATTTATTAAGCCTAATTAGTTCAAGATTGAAAACTTTTTGTCAAATAAGAC | |||||||||
gi|36051671|gb|CA292656.1|CA292656 SCRLFL8025A02.b FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCRLFL8025A02 3', mRNA seque TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): GCAGGCGTTTGATGAAGCTATCTCTGAGTTAGACACCCTTGGGGAGGAGTCATACAAAGATAGCACTCTGATCATGCAGCTCCTGAGGGACAACTTGACCCTTTGGACCTCTGACCTCACGGAGGATGGTGCTGATGAGGGCAAAGAAGCCTCAAAAGGCGATGCTGGCGAGGGACAGTAATCTTCGGAGAGGGCATGTTGTTCCAGCCTGGTTTTAGATGCTCTATGCTGTCGAAGCTGTGCCGTGCCATTATTGTAGCAGATTTCCTCTTCCCCTCACTTTTGCCTCATTAGTAGGCTGGTAGTGGTCGAATGAGTTCCCATTGCTTTGTGTTGCAGCTAGTTGGCACTAGGTCCGTGTGGACTGGTATTGTTCCCCTGGATTTGACAAGCATGTCTGGTCGCTCTAGCGTTTTATTGAGCTTTGAAGTTACGAGACGAATTTATTAAGCCTAATTAGTTCAAGACAGGAAATTTTTTTGTCAAATAAGATGAAAGTGTTACCGTGTT | |||||||||
gi|36049236|gb|CA291853.1|CA291853 SCQGFL8017E01.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCQGFL8017E01 5', mRNA seque TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): CTTAACTTCTCAGTGTTCTATTATGAGATTCTGAACTCCCCAGACAAAGCTTGCAACCTTGCAAAGCAGGCGTTTGATGAAGCTATCTCTGAGTTAGACACCCTTGGGGAGGAGTCATACAAAGATAGCACTCTGATCATGCAGCTCCTGAGGGACAACTTGACCCTTTGGACCTCTGACCTCACGGAGGATGGTGCTGATGAGGGCAAAGAAGCCTCAAAAGGCGATGCTGGCGAGGGACAGTAATCTTCGGAGAGGGCATGTTGTTCCAGCCTGGTTTTAGATGCTCTATGCTGTCGAAGCTGTGCCGTGCCATTATTGTAGCAGATTTCCTCTTCCCCTCACTTCTGCCTCATTAGTAGGCTGGTAGTGGTCGAATGAGTTCCCATTGCTTTGTGTTGCAGCTAGTTGGCACTAGGTCCGTGTGGACTGGTATTGTTCCCCTGGATTTGACAAGCATGTCTGGTCGCTCTAGCGTTTTATTGAGCTTTGAAGTTACGAGACGAATGTATTAAGCCTAATTAGTTCAAGACAGGAAATTTTTTTGTC | |||||||||
gi|268785207|gb|DN195541.1|DN195541 SUM01-034F-A08-053.b Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 TTAGGCTTAATAGATTCGTCT EST sequence (targeted fragment marked with yellow): AATCTTGTAAAATTTTTGGAAGTTAAACACTGCCTAAACAGCCCCTAGGTCGCTGCGGCGAAGTTCGTTGTGTATGTGTCAGCAATCAGATGTAGAAACCCTTCCCTGCTCCAAGTCGTATGATAAAGTGCGCGTTCTATTGTGCCATCTATTCAGTCTTTTGTCAGACATGTTTCCGGGAATTGCTAGTGTCAGCTTATCATGGATTCATACTTTCTTTAGGCACCGTTTGGTTACATTTTGTTAAAATTTAACTCTCATCACATCAATGTTCCCTCAAATGCATGGAGTACTAAATTTAAACTAATTGCATGCATGTCGGTATAGATTATGAGTAATTTACGAGACGAATCTATTAAGCCTAATTAGTTGTTAAACTTTAACTCCTCAAACCAAACACCCCTTAGTTCCCTTAGTTAGCGGAATAAGCTTAACATGCTCCAGCCTCTACAGCTGGAATACATATGGATGGCGCACCCTTTTTTAACTACTGATCTAAGTTATTCAGGCAGTAAAGTGATTGGGAGCTATGGGCCTGCGTAAAATCATGGCTGCTAACACTCGCTATCGTGAGCTCCGTTTGCTGGACCTATACAAGAAAAAAAAAGTTGCAGGACTAAATCACGCTTAGAAAGGATCAGAACATTATCAACAGGTTATATTACCATAATGCCCACCAATTCAATCGGGC | |||||||||