| mature miRNA: TTAGGCTTACAAGATTCGTCT species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|36026247|gb|CA285611.1|CA285611 SCEZSD1079C07.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCEZSD1079C07 5', mRNA seque TTAGGCTTACAAGATTCGTCT EST sequence (targeted fragment marked with yellow): GCCGCACCAGCTGAGGCGCCCGCGCCGGAGAACAAGGAGGCAAAGCCGGCAGAAACCCCCGCGGCTATGGATGCCACCGTGGTACGCACAGTACATGACTACCCGTACGGGTACGGCCATGGTGGCCACCACATGCACAGTGAGCACTGGGTGAGGGCGAAGCACCCCATGGACATGCATGGCGTCAGGTACGAAGCATCACCTTACGTAGCCGAGTACGGCGGCTATGGTGGCTTTCCGGTGCAAGAAGGAAGGTACTACATCCCTGCAGAGGACTACCCAGCAAGGGGAAAAGGAGATGACAGACAGATCACTTCTATCTTCAGCGATGAGAACCCAAACGCATGCAACATAGTGTGAGATGAGAGTGAGACCCCATATGTTGCANATCTGCTCAAGGAATTAATTCGTTTTTGCAGAGACCTTGCATTGATGCCAAAGAAAGCTTGCATGTATAGTGCAAAGACAGATCATGTAAGCTTAATTTGGCCTATGTACGAATTAATGGCCACTGTCTACTTGTAAGAATTGAGTATTGGGTTTATGTGATGTAGTGATGGAAAGGGAAC | |||||||||
gi|36033550|gb|CA286902.1|CA286902 SCSBSD2055A10.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCSBSD2055A10 5', mRNA seque TTAGGCTTACAAGATTCGTCT EST sequence (targeted fragment marked with yellow): CATCAATCTGGCTGAACCAGTTCTACTACATCTTTGGCTTCCTCTTCATAGTCTTTGTCATCCTCATTGTGACATGTGCTGAGATCACAATTGTGCTATGCTACTTCCAGCTGTGCAGTGAGGATTACCACTGGTGGTGGAGGGCATACCTGACTGCAGGCTCGTCAGCACTCTATTTGTTTGCTTATGCTATCTTCTACTTCTTCAATAAGTTGGAGATCACAAAGCTTGTCTCAGGCATCCTGTACTTTGGTTACATGCTGATCATCTCTTATGCCTTCTTTGTGCTGACTGGTACCATTGGCTTCTATGCCTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATTAAACAACCACTGTCTAGAGATACTTATTTTATGCTCATAGAGTACCTCCTGCCAAGGTTTTGCTGCAATGTCGTGCATGGTGCTGCTTGATTGATATATGAAAGGAAACTAGGATTTGGGATGGAATTCCGTGGTTTTGGTAGGAATATGTGTAGCCTGTTAGGAGCAAGAACTGCTGGAAGTTGAAGTGAGATCTTGATACGCGATGTTGTAGTGCAACATGGATTTTGTACGCCTAAAGATATTTAGTGCTGCACTGTAATATGCCTTGN | |||||||||
gi|268805532|gb|CN607831.1|CN607831 SUL01-019F-C11-082.b Sugarcane leaf whorl library Saccharum hybrid cultivar CoS 767 cDNA clo TTAGGCTTACAAGATTCGTCT EST sequence (targeted fragment marked with yellow): AAGGTTGATGAAAATCAACTTGTGCTCTATGCTCAGATGGCCAATCTTGTGAGCCTGATTCTTCCTTTGATGGAGCTTGACCTTAAGGAAATTGCACACACTTTTTCTAAGTTTGCCTGCAATGCGCATACCATATGTGACCCTGAACTTAGGCCTCTTGGGACTGGACTGTACCCTGTCATATCCATTATTAACCACAGTTGTGTACCAAATGCAGTATTGATATTTGATGGCCGCACAGCATATGTTCGTGCATTGCAGCCGATAGGCAAAGATGAAGAGGTATCTATAAGCTACATTGAGACTGCAGCAGTCACCAAGAAGAGACACAATGATCTGAAGCAGTACTTCTTCACCTGCACATGTCCACGTTGTGTCAAGGGTTCTGAGGAGGATGCTCTACTTGAGGGGTTCAGGTGCAAGAACCAAGCATGTGATGGC | |||||||||
gi|36037075|gb|CA288077.1|CA288077 SCEPSD2069F05.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCEPSD2069F05 5', mRNA seque TTAGGCTTACAAGATTCGTCT EST sequence (targeted fragment marked with yellow): TGCCAAACGCATGCAACATAATGTGAGATGAGAGTGAGACCCCATATGTTGCAAATCTGCTCAAGGAATTAATTCGTTTCTGCAGAGACCTTGCATTGATGCCAAAGAAGCTTGCATGTATAGTGCAGAGACAGATCATGTAAGCTTAATTTGGCCTATGTACGAATTAATGGCCACTGTGTACTTGTAAGATTTAAGTATTGGGTTTATGTGATGTAGTGATGGAAAGGGAACAATAAGATGCTTAACGTGTACATAGTGGGAGAATGAGATGATTTTCCTGGCAATCACCACTATTTTCACTATGCATGCCCTTCATGCTTCTCTATCGTCTCAGAGAAGAATCTATAAAGCTGTGGTCCTGTGTGTATTACAAGG | |||||||||