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mature miRNA: TTAGGTGCAGTGGCAGATGCA
species: Brachypodium distachyon
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|270424555|gb|GT807313.1|GT807313 CCXG14364.b1 CCXG Brachypodium distachyon superpool Brachypodium distachyon cDNA clone CCXG1

TTAGGTGCAGTGGCAGATGCA
|| ||||||||.| ||||| |
AAGCCACGTCATCCTCTACAT

EST sequence (targeted fragment marked with yellow):
AAATCGATGAGAGTGAATTGCCAGAATTTTTTGGTGGCAAATGCAAGTGTGACGAATACGGAGGCTGCCAAAGATCAGATAAAGGTCCTTGGAAGGATCCCAACATAATAAAGAGGGTCCTAAATGGCGAGGCAAGCTATGACAGGCAGATCGTGACCATATCAGGCACCGATGGAAAAATTATTGGTTATGCTAGGCCACAGCGCCCAACTAGAAAAGGCAGTGATGCATCTGCTGAGTCTGGGTCTGAAGTGGAAGAGATTACATCTCCTACTGCACCGAAGAACCTGATAACAAACCCTATACTAACCCCTGTTCACGAGGAGTCAAAATTTGCACAGCATGCATCAACATCTGCTGCTCGACCCATTGTTGAAGAAAGCATCCCTGTTGTCGACAAGGTTGTGGACGACGGATGGAGCAGCCCCAGAGCTAGTCCAACTGCTTCTTCACCAGGTTCATTATCCTTGAGTAATTTACCGACCACGTTTCAGGAATTCGGACTTTGACTATCACATGGCTGACAGTCTGGATGTGAGTCTTTTCGGATGCTTAGTTCCGTTCCCGAGCAGATGCCAAAAGGCTTCTCA