| mature miRNA: TTATTGTGTTGTGTTTGTTGT species: Phaseolus coccineus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|207542729|gb|GD525673.1|GD525673 454PCS0153364 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): GGGCCATAACAAATTCAACAAAATAAAAATAAGATATCGCTCAAAAGACGCGGTAAGATTTCCCCA | |||||||||
gi|207561194|gb|GD544961.1|GD544961 454PCS0172652 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): TGGCCGGGGACGGTATGCACAACTACAAAAACAACACAATACCCTAATTTCTCTGCCTGACCCTCATTACCTGTTTTCCGCTCCGGCAACTTCTCTTCCGGTGCCGCCGCTATTTCCG | |||||||||
gi|27392593|gb|CA905601.1|CA905601 PCS01573X5F Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): GGACGGTATGCACAACTACAAAAACAACACAATACCCTAATTTCTCTGCCTGACTCTCATTACCTGTTTTCCGCTCCGGCAACTTCTCTTCCGGTGCCGCCGCTATTTCCGCCTTCTAAGTTCGCCGTGACCTTCTATCCCTAAGCGCTGCACCAGTGCTGTAGATCTTCAATTTGATTACTTGGGTCAGATTTCTGTCATTCTCAATCATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTTACCAATGCCTACTGCTTGGTTGCCATTGGAGGCTCTGAAAGCTTTTACAGTGTATTTGAAACTGAGTTAGCTGATGTTATCCCTGTGGTCAAGACATCCATAGGCGGTACTCGTATTATTGGTCGTCTTTGTGCTGGAAATAAGAATGGGCTTCTCTTGCCCCATACCACCACAGATCAAGAACTTCAGCATTTGAGGAACAGTCTACCTGATC | |||||||||
gi|207622221|gb|GD604272.1|GD604272 454PCS0231963 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): GATAAATGTATTATGGGCCATAACAAATTCAACAAAATAAAAATAAGATATCGCTCAAAAGACGCGGTAAGATTTCCCCATGGTACTCTTCAGATACAAGCACCTAACATTTTG | |||||||||
gi|207551515|gb|GD535767.1|GD535767 454PCS0163458 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): TTAAGATAAATGTATTATGGGCCATAACAAATTCAACAAAATAAAAATAGATATCGCTCAAAAGACGCGGTAAGATTTCCCCATGGTACTCTTCAGATACAAGCACCTAACA | |||||||||
gi|207217600|gb|GD372033.1|GD372033 454PCEP0082190 Scarlet Runner Bean globular-stage embryo-proper regions Phaseolus coccineus TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): ATAGCAAGCACAACACAAGATGACAGTAACAAGGTTCACACCTCAAAAAGGATGAAGTACCATCATCAA | |||||||||
gi|27398536|gb|CA911544.1|CA911544 PCSC08339 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar t TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): GACTTTTAAACATTTTCTTCACCTTCACCAACCGTCCCCTCTCTCTCTCTCTCATTTATTTATTATGCGCGTAGAGAAGAAAAGTGAACACAACACAACAAACACACGAGAAACAGTTAGAGAAATTGGCTTGAAATAGAGCCAAATTTCAGAATTGCTTACTCTCACTGCCATGGCTGGTCTTCAAAGATCTGCAGTTTCCTTCAGGAGGCAGGGTTCTTCCGGCTTCGTTTGGGACGATAAGTTCTTATCAGAGGAATTCAACAAACTCAATAACCAACACCAAAACAACGATGCCGATCAGACCAAAGACCTTCAACTTCAACCAGCGCCGCCTCTCCAGAGAACCCGCACCAGCGGCGGAGCTCGCGCCTACCGCACCGGATAAGTATCGCCGGCGATCGAGCCTCCGTCTCCCAGGCTCTCTGCAT | |||||||||
gi|27383678|gb|CA896687.1|CA896687 PCEP05305 Scarlet Runner Bean Embryo-Proper Region Phaseolus coccineus cDNA 5' similar to Sim TTATTGTGTTGTGTT-TGTTGT EST sequence (targeted fragment marked with yellow): TTAAACTAAGAAGGAAGTGGTCACCGACACGACACAACACAACACAGTGACAGTACCATGGGTTGTGGCGGTGCATTCTCGCATCTCATTTTCACTGCTATCGCAATAGCAATAGCGATTCCATTGGGTGGCTGCGATACGCCTCCGGTGGTGTTTGTCTTCGGCGATTCCAACTCCGACACGGGTGGACTCGCTTCCGGACTCGGTTTCCCTATCAATCTTCCCAATGGCCGCACTTTCTTCCGCAGATCCACTGGTCGCTTGTCCGATGGACGCCTCGTCATCGACCTACTCTGCCAAAGTTTGAATGCAAGTTTGTTGGTACCATACATGGACGCTTTGTCCGGAACCTCATTCACAAATGGAGCAAACTTTGCTGTGGTGGGGTCCTCTACTCTCCCTAAGTATGTTCCTTTCTCCTTAAATATACAGGTCATGCAATACCGGCGTTTCAAAGCTCGTTCTCTCGAACTTGTTACGGCAGGTGCAAGAAATTTCATTAGTGACGAAGGCTTCCGCAATGCACTCTACTTGATTGATATTGGTCAAAACGACC | |||||||||
gi|207658422|gb|GD641497.1|GD641497 454PCS0269190 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): TGGCCGGGGACTTTTAAACATTTTCTTCACCTTCACCAACCGTCCCCTCTCTCTCTCTCTCATTTATTTATTATGCGCGTAGAGAAGAAAAGTGAACACAACACAACAAAACA | |||||||||
gi|207160594|gb|GD312598.1|GD312598 454PCEP0022754 Scarlet Runner Bean globular-stage embryo-proper regions Phaseolus coccineus TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): AAAATGCTAAGAATGTGAATAAGTTTAAGAAGTTGTTAAAGCAGCAAAACCAACACAATGATCCCACCTTGGCTCAGGGACATGATAAGAATGTAAATGAAA | |||||||||
gi|27398537|gb|CA911545.1|CA911545 PCSC08653 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar t TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): GACTTTTAAACATTTTCTTCACCTTCACCAACCGTCCCCTCTCTCTCTCTCTCATTTATTTATTATGCGCGTAGAGAAGAAAAGTGAACACAACACAACAAACACAGAGAAACAGTTAGAGAAATTGGTTTGAAATAGAGCCAAATTTCAGAATTGCTTACTCTCACTGCCATGGCTGGTCTTCAAAGATCTGCAGTTTCCTTCAGGAGGCAGGGTTCTTCCGGCTTCGTTTGGGACGATAAGTTCTTATCAGAGGAATTCAACAAACTCAATAACCAACACCAAAACAACGATGCCGATCAGACCAAAGACCTTCAACTTCAACCAGCGCCGCCTCTCCAGAGAACCCGCACCAGCGGCGGAGCTCGCGCCTACCGCACCGGAAAAGTATCGCCGGCGATCGAGCCTCCGTCTCCCAGGCTCTCTGCATGCGGCTTTTGCGCCGCGTTCGGAAAAACACCGCCGCGGGACCACAGCAAGCCGCAACGGACTATGGCCGCGAAGCATCGAGCGAGG | |||||||||
gi|207186834|gb|GD340382.1|GD340382 454PCEP0050538 Scarlet Runner Bean globular-stage embryo-proper regions Phaseolus coccineus TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): ACTATTCTTCATTGCATTTCAGAGAAAACACCACCAATACAACACAATCATCATT | |||||||||
gi|207178257|gb|GD333859.1|GD333859 454PCEP0044015 Scarlet Runner Bean globular-stage embryo-proper regions Phaseolus coccineus TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): CGTCCTATTTATTGGCCGGGGACTTCCACTATTCTTCATTGCATTTCAGAGAAAACACCACCAATACAACACAATCAT | |||||||||
gi|207655206|gb|GD638095.1|GD638095 454PCS0265786 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): AAAACTGTAACAAGATTGTAAAATTTGCATCTAGCTATTAAGATAAATGTATTATGGGCCATAACAAATTCAACAAAATAAAAATAGATATCGCTCAAAAGACGCGGTAAGA | |||||||||
gi|27398534|gb|CA911542.1|CA911542 PCSC06445F Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): GACTTTTAAACATTTTCTTCACCTTCACCAACCGTCCCCTCTCTCTCTCTCTCATTTATTTATTATGCGCGTACAGAAGAAAAGTGAACACAACACAACAAACACAGAGAAACAGTTAGAGAAATTGGTTTGAAATAGAGCCAAATTTCAGAATTGCTTACTCTCACTGCCATGGGTGGTCTTCAAAGATCTGCAGGTTCCTTCAGGAGGCAGGGTTCTTCCGGCTTCGTTTGGGACGATAAGTTCTTATCAGAGGAATTCGACAAACTCAATAACCAACACCAAAACAACGATGCCGATCAGACCAAAGACCTTCAACTTCAACCAGCGCCGCCTCTCCAGAGAACCCGCACCGGCGGCGGAGCTCGCGCCTACCG | |||||||||
gi|27398212|gb|CA911220.1|CA911220 PCS05914F Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar t TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): GGGCTCCTTCTTCACCTTCCAATAAACGCAACACAAAAGAAAAGAACAAAGAGAGAGAAGTATGATCAAGTTGAGGTCAAAGAGGTTTTCAAGAAGCAGATCCAAGCTTGGCAATGGCAGCAGCAAAGGAGGAGCATCTTCCCCAGAAAAGGATGCCAAAAACATTGGTGAAATCAAGTGGGAACTTAGGCCTGGTGGCATGCTTGTTCAGAAGAGGGAGAGTAGCCAAAGTGATGGTGAGGGAGTGATTGCTGTTAAAGTCTCCACTGTCTCACAGTGGCATGACATTTCCATTGATGCAACTTCAACTTTTGGTAAATTGAAACTGGTTTTGTCACTGGTGACAAATTTGGATCCTAGAGAGCAGAGGCTTCTTTTCAAGGGCAAAGAGAGAGAAGACAATGAATTCCTTCACATGGTTGGGGTTAGGGACAAGGACAAGGTCCTAATGCTTGAGGATCCTGCAACAAAGGAGATGAAGCTTCTTGGCATGGCAAGAGGCCAACCCATTAACAATACTTGTTGTACCATCACTGTATGACCCTTGAATATTCATCAAACTTCATGTTAATTAGCACTAACCAGAAAAAGAAAAAGAAAAAAAAGTGAAGTAAAGTTGAATGTAAAATGATGG | |||||||||
gi|207554900|gb|GD537889.1|GD537889 454PCS0165580 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu TTATTGTGTTGTG-TTTGTTGT EST sequence (targeted fragment marked with yellow): GAGGCAATCCGAACTCAGAAGTAAAAACAAAAGTAGCAAACAACAAAGCACAGCACAATGGCCAGG | |||||||||
gi|207636122|gb|GD620350.1|GD620350 454PCS0248041 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): TGGCCGGGGTCTGATCTCTTCTCTCTCTGCTCTTCCTAATTGCTGTTGGTGTTGATGTGAGGAAGAAACTGTTGTTTCAACCACAAACACAACACAAGATA | |||||||||
gi|207578381|gb|GD562403.1|GD562403 454PCS0190094 Scarlet Runner Bean globular-stage suspensor region size-fractionated Phaseolu TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): TGGCCGGGGACGGTATGCACAACTACAAAAACAACACAATACCCTAATTTCTCTGACCTGACTCTCATTACCTGTTTTCCGCTCCGGCAACTTCTCTTCCGGTGCCGCCGCTATTTCCG | |||||||||
gi|27392597|gb|CA905605.1|CA905605 PCSC19274 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar t TTATTGTGTTGTGTTTGTTGT EST sequence (targeted fragment marked with yellow): TACCGTATGCACAACTACAAAAACAACACAATACCCTAATTTCTCTGCCTGACTCTCATTACCTGTTTTCCGCTCCGGCAACTTCTCTTCCGGTGCCGCCGCTATTTCCGCCTTCTAAGTTCGCCGTGACCTTCTATCCCTAAGCGCTGCACCAGTGCTGTAGATCTTCAATTTGATTACTTGGGTCAGATTTCTGTCATTCTCAATCATGGCAACTAGACTTCAGTTTGAAAATAATTGTGAAGTTGGAGTCTTCTCTAAACTTACCAATGCCTACTGCTTGGTTGCCATTGGAGGCTCTGAAAGCTTTTACAGTGTATTTGAAACTGAGTTAGCTGATGTTATCCCTGTGGTCAAGACATCCATAGGCGGTACTCGTATTATTGGTCGTCTTTGTGCTGGAAATAAGAATGGGCTTCTCTTGCCCCATACCACCACAGATCAAGAACTTCAGCATTTGAGGAACAGTCTACCTGATCAAGTTGTTGTTCAGCGTATAGACGAAAGGTTATCTGCTCTGGGGAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTTGACAAGGAAACTGAAGAGATGATTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACCATTGCAGGCAACATTCTTGTTGGTAGTTACTGTGCCTTCTCAATAGGG | |||||||||