| mature miRNA: TTATTTGCCCGAAGGGGACGTCCT species: Chlamydomonas reinhardtii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|15695749|gb|BI720054.1|BI720054 1031047D07.x1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei TTATTTGCCCGAAGGGGACGTCCT EST sequence (targeted fragment marked with yellow): TTTTTTAATTAAAATATTATACATAACATTAAAATTTTTGAACTTTTAAAGTTTTGTTAGTTATTAAAACAATTTTTCTAAGCTTTACTTAATAAGCTTATTACATCTGTGATTCTTGTTCACTTTAAAAAGTTTACTAACTCCATCTGACGCCCCTTTGTGATAGTGATATACTCCAAAAGGGAAAGAAGGGTTTAACAAGCTATTAACAGGTTTTTGGGTCAGTAAACTGACCCTAAAGCCAGGCATTAGCGTTAGGAGTATTACATGCCATATGAATTTGATGGTCCAACAGACCACTTTAAAACTTTAGTAGCTGAAGCAGTGGCCTCGCCCATTGGCTAATCCTTTCGGGACGCCAGTGGGTGTCCCCTTCCCCTTACGGTACGCCAGTGGACGTCCCCTTCGGGCAAATAAATT | |||||||||
gi|8286714|gb|BE024273.1|BE024273 894001H07.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TTATTTGCCCGAAGGGGACGTCCT EST sequence (targeted fragment marked with yellow): TAGCACGAGGCTTTGGAGTATATAACCGCCTACAGGTAACTTAAAGAACATTTGTTACCCGTAGGGGTTTATACTTCTAATTGCTTCTTCTGAACAATAAAATGGTTTGTGTGGTCTGGCTAGGAACTGTAAAATGTGTATGTCCTTTCGCTTCCCCTTCGGGACGTCCCCTTCGGGTAAGTAAACTTAGGAGTATTAAATCGGGACGTCCCCTTCGGGTAAATAAATTTCAGTGGACGTCCCCTTACGGGACGCCAGTAGACGTCAGTGGCAGTTGCCTCGCCTATCGGCTAACAAGTTCCTTCGGAGTATATAAATATAGAATGTTTACATACTCCTAAGTTTACTTGCCTCCTTCGGAGTATATAAATATCCCGAAGGGGAAGGAGGACGCCAGTGGCAGTGGTAC | |||||||||
gi|23367358|gb|BU655176.1|BU655176 1112118C11.x1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TTATTTGCCCGAAGGGGACGTCCT EST sequence (targeted fragment marked with yellow): TTATGTTCAAGATAGCTCGCTAGACTATCTCCGTTAATCTATTAAGCCATCCCCTGACGGGAATATAAATATTGCTTAATGCATAACTGCTTTATATGACTATAAAGATCAGACCATATCAATATCCTGTATCACCTTCGTATGCCAGAAGGTTTTTCCCTTACGGGGATATATTATGAAACAGGATAATCGTCGTTTCGGTGCGCTTGCACCTACTCTCTTGCGAGATGGTCGTTAGACATTTATCTGAAAACTAAAATAATAATAAAAATCTTAGGACGTCCCCTTCGGGTAAATAAATTTTAGTGGACAAATTTATTTATTGTTGCCTGCCAACTGCCACTGACGTCCACTAATATTTATATTCCCGTAAGGGGACGTCCTTCCCCTTCGGGCAAGTAAACTTAGGAGTATATAAATATCCCTAAGTTTACTTGCCCGTAAGGGGAAGGGGAAGCAGGCAGTGGTACCGCCACTGCCTATAAAACCCCTTACGGGGAAGGTGAATTTTGTGTATAACCCGGTTTTCCGTTTTTGATATTTTTCGAAACAGCTTGAACTGAAATACCTATGGCTTTAGCAGCTGCACTTATAGATGGAAATGTTTGATTAAAGATACCTTTTTCTGGTAAATTAATTGTAACAGATAACGCTTGACCAGTTACATTACGTTTTTTTAAATTGCTTGTTTCACCTATTAAATGTTTATTATTTTTTTTACAGCGAATGGCATA | |||||||||
gi|16434004|gb|BI999230.1|BI999230 1031072A02.x3 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei TTATTTGCCCGAAGGGGACGTCCT EST sequence (targeted fragment marked with yellow): GGCCCCCCCTTCGAGTATTNCAACAAAATGGTCAGTTGAATTTACTTTTGCTCAAATTCATGGATTTACTAATACACGTGAAATTTTAGAATNAGTAACACGACCTCTTAGACGCAATCTAATGTCNAATCAATCTGTAAATGCTATTTCTTAATATAANNCCCAAAAGATTTTTTTTATAATACTGAGACTTNAACACTTACTTGTTTTTATTTTTTGTAGTTANAATTCACTCACGTTAAAGACATTGGAAAATGAGNCAGGACGTTAGTCGATATTTATACACTCTTNAGTTTACTTGCCCAATATTTATATTAGGACGTNNCCTTCGGGTAAATAAATTTTAGTGGCAGTGGNACCACCACTGCCTATTTTAATACTCCGAAGCATNTAAATATACTTCGGAGTATATAAATATCCACTNNTATTTATATTAGGCAGTTGGCAGGCAACAATAANNAAATTTGTCCCGTAAGGGGACGTCCCGAAGGGGNNNGGGAAGAAGGCAGTTGCCTCGCCTATCGGCTAACANNTTCCTTTGGAGTATATAACCGCCTACAGGTAACTTNNAGAACATTTGTTACCCGTAGGGGTTTATACTTCTAATTGNTTCTTCTGAACAATAAAATGGTTTGTGTGGTCTGGCTAGGNACTGTAAAATGTGTATGTCCTTTCGCTTCCCCTTCNGGA | |||||||||
gi|8286714|gb|BE024273.1|BE024273 894001H07.y1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TTATTTGCCCGAAGGGGACGTCCT EST sequence (targeted fragment marked with yellow): TAGCACGAGGCTTTGGAGTATATAACCGCCTACAGGTAACTTAAAGAACATTTGTTACCCGTAGGGGTTTATACTTCTAATTGCTTCTTCTGAACAATAAAATGGTTTGTGTGGTCTGGCTAGGAACTGTAAAATGTGTATGTCCTTTCGCTTCCCCTTCGGGACGTCCCCTTCGGGTAAGTAAACTTAGGAGTATTAAATCGGGACGTCCCCTTCGGGTAAATAAATTTCAGTGGACGTCCCCTTACGGGACGCCAGTAGACGTCAGTGGCAGTTGCCTCGCCTATCGGCTAACAAGTTCCTTCGGAGTATATAAATATAGAATGTTTACATACTCCTAAGTTTACTTGCCTCCTTCGGAGTATATAAATATCCCGAAGGGGAAGGAGGACGCCAGTGGCAGTGGTAC | |||||||||
gi|16431939|gb|BI997165.1|BI997165 1031047D07.x2 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei TTATTTGCCCGAAGGGGACGTCCT EST sequence (targeted fragment marked with yellow): TTTTTTAATTAAAATATTATACATAACATTAAAATTTTTGAACTTTTAAAGTTTTGTTAGTTATTAAAACAATTTTTCTAAGCTTTACTTAATAAGCTTATTACATCTGTGATTCTTGTTCACTTTAAAAAGTTTACTAACTCCATCTGACGCCCCTTTGTGATAGTGATATACTCCAAAAGGGAAAGAAGGGTTTAACAAGCTATTAACAGGTTTTTGGGTCAGTAAACTGACCCTAAAGCCAGGCATTAGCGTTAGGAGTATTACATGCCATATGAATTTGATGGTCCAACAGACCACTTTAAAACTTTAGTAGCTGAAGCAGTGGCCTCGCCCATTGGCTAATCCTTTCGGGACGCCAGTGGGTGTCCCCTTCCCCTTACGGTACGCCAGTGGACGTCCCCTTCGGGCAAATAATTTAGTTTGGACGTCAGTGGGCAGTTGCCTGCCAACTGCCGATATTTA | |||||||||
gi|23361292|gb|BU649112.1|BU649112 1112076E05.x1 C. reinhardtii CC-1690 (mt+), CC-1691 (mt-), Gamete (normalized), Lambda Zap II TTATTTGCCCGAAGGGGACGTCCT EST sequence (targeted fragment marked with yellow): TTACAACAAAATGGTCAGTTGAATTTACTTTTGCTCAAATTCATGGATTTACTAATACACGTGAAATTTTAGAATTAGTAACACGACCTCTTAGACGCAATCTAATGTCAAATCAATCTGTAAATGCTATTTCTTAATATAAATCCCAAAAGATTTTTTTTATAATACTGAGACTTCAACACTTACTTGTTTTTATTTTTTGTAGTTACAATTCACTCACGTTAAAGACATTGGAAAATGAGGCAGGACGTTAGTCGATATTTATACACTCTTAAGTTTACTTGCCCAATATTTATATTAGGACGTCCCCTTCGGGTAAATAAATTTTAGTGGCAGTGGTACCACCACTGCCTATTTTAATACTCCGAAGCATATAAATATACTCCGGAGTATATAAATATCCACTAATATTTATATTAGGCAGTTGGCAGGCAACAATAAATAAATTTGTCCCGTAAGGGGA | |||||||||
gi|15691892|gb|BI716181.1|BI716181 1031007G01.y1 C. reinhardtii CC-1690, Stress II (normalized), Lambda Zap II Chlamydomonas rei TTATTTGCCCGAAGGGGACGTCCT EST sequence (targeted fragment marked with yellow): CAACTGGTTATAAAAAGATTTAACTTAATAAGCATTTTATTATAATATTACTCATATCAAATTTTAAAGAAGATAGAATTATTTTAATTTTATATGGAAATCCTATTCGCAATTTTCTACTAATTGCAAAGCATATCCCCCGAATTAAAAGGCAGGGGACATAAATGTCCCCGTAAGGAGACGTCCCCTGCCGTCCTTCCCCTTCGGGACGTCAGTGGCAGTTGCCTGCCAACTGCCTCCTTCGGAGTATTAAAATCCTATATTTATATACTCCGAAGGACGTCCCCTTCGGGTAAATAAATTTTAGTGGACAAATTTATTTATTGTTGCCTGCCAACTGCCGATATTTATATACTAGGCAGTGGCGGTACCACTGCCACTAATATTTATATTCCCGTAAGGGGACGTCCTCCTTCGGAGTATGTAAACATGCTAAGTTTACTTGCCCGAGGGANAGGGAAGGCAGNNGNCNGNCNNCTGNCTNCT | |||||||||
gi|9458950|gb|BE452606.1|BE452606 894064A06.x1 C. reinhardtii CC-1690, normalized, Lambda Zap II Chlamydomonas reinhardtii cDNA, TTATTTGCCCGAAGGGGACGTCCT EST sequence (targeted fragment marked with yellow): GGGTACCGGNGCCCCCCCTTCGGCGCGATCACCTAAACGTAATACACGTGNGAACCATTTGAATAGCACCAGCACGACGACGTGGTTTTACTTCAACACGTGGTGTTACGTTATCTAAAGCTTTTTCGAAAACTTCTACTGGGTTTTTTTGTGTAACATCACCAATTTCTTTTAATGCGTTATAAACAATTCGATATGCTACAGATTTTTTACCACTTTTTAAAACACGGTTTACTAACATATGTACTGATACACTGTTATAAACTGGATCTGGTAATAAAGTACGTTTTTTATTAATGGGACGACGTGGCATTTTTATTTTAAAAAAGCATCATTATTTTTACTAAATGGTTAAAATAGATGCAAACTTTCATACCAAATAAGCAATTTTAGTTATGTGATGGTTTAATAGGACGTCCCCTTCGGGCAAATAAATTTTAGTGGATATTTATATACAATAAATAAATTTGTTGCCTCGCCTATCGGCTAACAAGTTCCTTCGGAGTATATAAATATAGGCAGTGGCGGTACCACTGCCACTAATATTTATATTCCCGTAAGGGGACGTCCTGCCAACTGCCTCTTTGAAAATCGCTACTTAATAGATATGCATATAACTAAGTTTACGATATCAAAACGAAATTACCAACT | |||||||||
gi|22059415|gb|BQ813413.1|BQ813413 1030036C05.y1 C. reinhardtii CC-1690, Deflagellation (normalized), Lambda Zap II Chlamydomona TTATTTGCCCGAAGGGGACGTCCT EST sequence (targeted fragment marked with yellow): TTTTAGTATATAAATTTTTTAAACGTTGTGTCATATTAAAAAAAAATAAAATGCACATATAGATAATGTTAAGCCAAAAGGTAATGCGCTATACAATACAATATAGCAATTTATTTAGCGAGGATACAGTAAATATTTAGATATCCGTAAGGGGACGTCACCTTAAAGTAAATAAATTTTAATGAAAGTTACACCGCCTACTGCTTTTATGAGAGCTATCATTTTGGCTTTGCATTATGTGTTCTTTTTATCCAAATCAACTGGTTATAAAAAGATTTAACTTAATAAGCATTTTATTATAATATTACTCATATCAAATTTTAAAGAAGATAGAATTATTTTAATTTTATATGGAAATCCTATTCGCAATTTTCTACTAATTGCAAAGCATATCCCCCGAATTAAAAGGCAGGGGACATAAATGTCCCCGTAAGGAGACGTCCCCTGCCGTCCTTCCCCTTCGGGACGTCAGTGGCAGTTGCCTGCCAACTGCCTCCTTCGGAGTATTAAATCCTATACTGATATACTCCGAAGGACGTCCCCTTCGGGTAAATAAATTTTAGTGGACAAATTTATTTATTGTTGCCTGCCAACTGCCGATAT | |||||||||