| mature miRNA: TTATTTTGGGACGGAGGGAGT species: Triticum monococcum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|9659942|gb|BE493349.1|BE493349 WHE0571_F10_K19ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA cl TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): GGCACGAGAATTTGGTTTGTGTGTGGTAGCATTCCTCCTAGCTTCATAGTATGGTCTATCTAGCTTGGCTTTTACTCCCTCGGTCCCAAAATAAGTGACACTTATTTTGGGACGGAGGGAGTACTTTAATGAATCTGAAGAAGCGTTATGTTT | |||||||||
gi|11113445|gb|BF199610.1|BF199610 WHE0591-0594_F21_F21ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum c TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): TTCAAGGACGGCCCCCCGCCCGAGTGCGCCACCAAGTAGAGTGTTCTATCTCGAGGCGACGTTCCCAGGATAGGCCACGTTCCCGGGTATATTTTTTTTCGGGGTAGATTGGGTATATAATTTGTGTACACCTACGTANGTAGTAATTGTAACCATGCAAGTATATAAATGATATACTCCATCCGTCTCAAAATAAGTGACTCGACTTTGTACTAGTCAGTGTAAAGTTAAGTAATTTATTTTGAGACGGAAGGAATAATAAATTCAGCTTATACAATATATCAATATTTATTTATTTAAA | |||||||||
gi|22015875|gb|BQ800906.1|BQ800906 WHE2804_A11_B22ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): CTTGGTGGACGAGGAGCATGACGATGCAGCCATCGGCCTCCTACCACAACAAGCGACCACCGTGGCCATCCTCCACCTGCCGCTGTAGCCTTCCTCCCCGACCGCCTCCACGACACGCTGGCCTTCGTCTACCTCTGGCTCCGCTGCTGCCCAAGGTTGTGTGCGCGATGGCGGCCCATGTCGTTTATCGTCGTGGCTGCGTACGCGCTGACGAGTGATGCCCTGATCCAGCTCCTCCATCCTCCAGCCATGGCAAGTCCAAGAGAAAGACATTCAGTCTAGCAAGCCAAATGGTTGACCACCAGCCCACGCGTGGATTGGCCCCGACCTGCAGCTGGAGGAGGCCGCGACCTTCAGCTATAGGAGACATCGACCTACGACTGGAGGAGGCCCCGACCTTCAGCTGTCAATTTTGAGTAACTAGCTACTCTGATAATCTAACTTGACACCGTATTTGTTTTTGTTCTTTATAAGTTCAGGCAACTAGGTTGTTCACTAGGAAAACCTTCTCTGTTTGTGCTAACTAGTACGTACTACTCCCTCCGTCCGAAAATAGTTGTCATCAAAATGGATGGAAAGGGATGTATCTACAACTAAAATAC | |||||||||
gi|22017629|gb|BQ802660.1|BQ802660 WHE2828_E09_J18ZS Triticum monococcum vernalized apex cDNA library Triticum monococcum cDNA c TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): ATTCGGCACGAGGCCAAACGTCTCAAGCGAAAGACAAGGAGAACATGGCGGCCATCTCCTCCACCTCCTACTTCTCCTCGCAGCCGCAGCTGCCGGCGTCCGACGGCGCCAACCCTGCCACAGCCAGAAGCAGCAGCAGCAACGGCCGGCAGCCCCGGAGGCGGCGGACCGGCAGGTGCGTCATGCTCGAGGCGGACGCTGCCTCTGGCAGTGGCAGTGTCGGCGCGGCGGTGGGGAGGACGAGGAGCCTCACGGAGGAGGACCTGGAGGAGCTCAAGGGCTGCCTCGACCTCGGCTTCGGCTTCTCCTACCATGAGATCCCGGGCCTCTGCGGGACGCTCCCCGGCCTGGAGCTCTGTTACTCCATGACGCGGAGGTTCCTCGACGAGCAGAGGACTCTGGTCGGGCAGCTCGAGCCCGCCGCGGCGGCGGCGGCGCCGCCCATCCCGGACTGGAAGATCTCCGGCCCTGGTGATGATCCCGACGAAGTGAAAGCTCGGCTCAAGTATTGGGCACAGACAGTGGCATGCACAGTCAAACTCTGCACCTAGTGGAGGTCGGGAACTCGGGACTAGGGAGTTTGCTGTGTGCTAAGATGGGCTCAACTGAAGGTGGCTGAAGCTGAAGAATCTGCTTACATGGCTCAAAGATACTCCCTCCGTCCGAAAATACTTGTCATGAAAAAGAATAAAAGGGGATGTATCTAGATGTATTTTAGTTCTAGATACATCCTTTTTTATCCATTTTGATGAAAAGT | |||||||||
gi|9659639|gb|BE493046.1|BE493046 WHE0562_G09_N18ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA cl TTATTTTGGGACGGAGGGAGT EST sequence (targeted fragment marked with yellow): GGCACGAGAGGGATCACCTGCTGATGTTGCTGGGTTATGTGTCGGTGATGTTCTTGTAAAATGTGGTGACAAACTTCTCTCTAATGTCCCAGAGTTTGGTGCAATGTTACTGGATGATGCGAAAACTCATTCTGACGCCTTTGGAGGTTGGGCTGGGGACATGACAATTGAGGTTGTGGTAAAGCGACAAAGAGATGGCAGCACGGTGTCAAAAACTATAGCGGCAGAGATGCTGAGGGAGGACAACTATAACAGATGGCCTGCACCTATGCCAAGCTACACGATTCGCCTAATAAATGTCACACCGCGTTAAAGTTTATGTGTTGGTATGTACTCCCTCCGTCTTAAAATATAAGGCGTTTTTTTACACTATCATGGTGTCAAAAAAACGTCTTATGTTTTAAAACACAGGGAGTACTTGATTGAGAGTGGACTCCTCGTGGACTGCTGGAGCGGTGTGGCTGGCGCTGGTGTGTTTTTGTGTGGGGATTGCATTGCAATTTGTTGCAGATCCTGTGTTAATCCACCGCTTTAATACCAAGCACGGACTTGCCCAGGTCAAAAAAAAAAAGCACCGGAAAGAT | |||||||||