miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTCAAGAAAACTGTGGGAAAG
species: Pinus contorta
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|262152763|gb|GT267531.1|GT267531 PCO0213.CR.1_L06 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO0213_L06 3', 

TTCAAGAAAACTGTGGGAAAG
|||| |||||||| ||.||||
AAGTACTTTTGACTCCTTTTC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTCCCTGCGATATATCTTTTATTTTGCCTCAGTTGTATTTCCCTCTGAGAAACGTGATAACGAAATATTGTTGTTCACGGTGCAATCACGCAGTGAATTGCTTGACACACGATTTTGCTTTTCTTTTCCTCAGTTTTCATGAAAACTATAGCTGCTTAGTCAACTTAATTATGTGCAGCATTACCACCCTAACACGGAATATAAAAAATAATGCAAGCATCTAGTAACTTTAGTTATGCATTCCAGTACTCAGCAAGATCAACGAGTGTTGGAATATTAGAACAAATATAAACAAACAACAGATGTTCCCAGTGTCGTCAACAGCACTGAAACAAAATTCACTCCGTTGTTGCTAAGAATATTTTCCCCAGAGATTTTCTTGACAGTTGGCCCTGGTTTTCCTACGACCTTCTTCCCCC


gi|262156539|gb|GT268426.1|GT268426 PCO0214.CR_O14 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO0214_O14 3', mR 

TTCAAGAAAACTGTGGGAAAG
|||||||||||||||||||||
AAGTTCTTTTGACACCCTTTC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTAATAGAAACATGTATGATATTTATCTGATATTGGCAGTTATGAAAGAACGCTTTTTTTTTCCTGCCGGAACATTAAAATATATCAGCAGCGCAGACTGTAGAACCAACCTATGACACTGACTTCGTTTAGCGAATACATAGCTAAGCTGAGCACTACTGCATTCATAAATGCAAGATGACAACACTTCAAAGAACGTGGTCACTTAACCGCCTAAGCCTGGATGGATGACGATAGTACTAACTACCTACAAATCTAATGAAAAACCCTAATAATAGACTAGACAAAAATCGACAGATCAGAATCTCAGAAAACTTCTCGAAACCCTAATAATCATAGCAAGACTCGTCCATTACGCGGCATACAGCAAAATCTAGCCAAGAGAAGGAGTCCTGCCCGGGCTTAAACAGGGCAAGATTATAGCAGGGTCATCGTGATGTTTCAGTCAGGGTTAGAAAAATAGACAATTTCTCAAGCTTAAGGAAATCCGTTAAAGAAAATCAAGAAAACTCACTAAACGCTTACCTTGATATAAAATTAAAGCAAATCTGCACCCGGTATCAAAGATCCAAGTCTCCCGCAAACCCCAGGCGCGGCCATGATAAGTATTGCAGAATCCTACCATGCTTTCCCACAGTTTTCTTGAACTTTAATCGCAGACGTAGAAATCAGAATCTCCTCGTCCCGTACACGTAAAGTTCAAGAAAGCTGTGGAAAAGTATGACAAGATTCGTCATGAGATCGAAACCCATCAGAGAAATAACTCCCACGCGCGATCTTGTGGCATGCAAAGTTATCGGATCTTTCTGCACAAAAAACCCAAAAG


gi|262147927|gb|GT258464.1|GT258464 PCO021.CR_N18 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO021_N18 3', mRNA 

TTCAAGAAAACTGTGGGAAAG
|.||||||||| . |.|||||
AGGTTCTTTTGCTTCTCTTTC

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTGGGACAACAATGCATATTTCAAATTGATCAATGAAATAATATCTGAAAGGATAAAGATTTAAATGTGATATATAACGATATCTGGATAAAGTCTACCCAGATATCTCTTCATTACAGTGATGTAATATAAAGATTTTCCTCGCAAGAAGACCTCTCGAAAATATCCTCGAGAAGAAGGCATCAAGATCAAGGGTTATCTCTGCAAAATTTCCCTGCCACTATATTTTTATGACAACCGGATGCAGAATCAGGTGTTAGTTGCAATAAAACCTTCCTGGCTTCTGCTTAACTTGGATTTGAAACAACTAGCTGGACATATTTGATCTGTTATCCAGGCTTACACAAAAATGACTTCAAATTTAGCACAAGGATTTTTCTGTACAAAGCTTTTAAAATCTTCATCATTATGAAACTTCCATGTATATAATGCTTGTCGCTGAGTTAGACCAACAGGGTATATTCTATAAATCTTCAACTTATTACTTCCACGAATCACTTCAGGCCGTTCGGTCTTCCAAATGGGTATGTGCTTCAGAGATCTGAACTTAGAAAGAACCGCTAGCTCAAGACCCTTTAGTGTGAGGTTCTGAGACCTTATAAAAACTGATTGCATTTCAAATCTTCCCCGCTCTCTTACATATAGATGGTATAATGTCTCTGAACCTTTCTCACATTTGCATGGGCGGTGTTTAGTGATATCCTTGGCTTTCTCTTCGTTTTCTTGGATTTGTGTTGCCAGATGAATGCAAAGGCGGCAAGAAGAGTGTACTGCTGCCATATCAACAAGGGCCTTGAATGAATCAGAAGGGCCCTCAAATTTCCACCTTAATCTCTCATTATAAGCAGTAGTATTTGAAGCAAGGTACTTCATAGACTCAGCCGCCAA


gi|262148440|gb|GT258977.1|GT258977 PCO022.CR_F22 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO022_F22 3', mRNA 

TTCAAGAAAACTGTGGGAAAG
|||||||||||||||..| |
AAGTTCTTTTGACACTTTATA

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTGATAAACCTGAATCATGCCATAGAATTGGGTGATAAACCTGAATCAGGCAATATCGCTCATATCAAAGATGAAATAATTAACATTCAGGCAAAACTTCATAGTAACACTGCCTGCAAGAATATCACAGCAAGAAAGAGATTCTCTTTCAAATCGTAACACAATCTATTGTTGATATTTCCCATTGCAGGATATATCAAAAGCAAAGTCAGCAGACGACCACAAAAATGGATTTCTAAAAAGAATGTATGTTGTCTTCCCCCATTAATTCTTCGAGCTCTATTATCTTCTCAACAAGTCAGTGAACGACCAGAAAAATGACTTTCTGAAACGATCGTATGTTATCTTTGCCCATTTATTCTTCAAGCTCTATTATCTTCACAACTGATGAGTCACCAACTTTTTGAAATACAACTATACGATCATGAGGCTTAATTATGCCTGCTGCTTTTCCATGATCCAACGCTATCTTCAATATAGACTCATTTGTAGCACCTGTAGTCTCAGCCGCGTGTTTAGGGTCTGCTAACATAGGAAAAATTCCTCTAACAGCAAGACACTGCCTTGCCTGAAATGCACCAGTAAAACTCCATTTTAACCAATTAGTTGTCAACCGTGGAATGACAACAGCTAAAACTGGCATAGTTGGCCTATATTTTGCTATCAACCTTGCAGCACGTCCAGATGATGTGAAAACAACTATAACAGAGGCCTTCACTTTGATTGCTGCACGTACCGCTGATGATGCAATGGATTCCAAATGTGTCATTGGTTCGCCCACATATTTCACAGTTTTCTTGAAATAAGCAGCTTGGTTATGAACCTTCTCTGCTTCTGCACAGATCTTTCCCACTATTGATATGGTCT


gi|262135133|gb|GT248588.1|GT248588 PCO0112.CR_C08 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0112_C08 3', mRN 

TTCAAGAAAACTGTGGGAAAG
|||||.||||||| ||.| |.
AAGTTTTTTTGACCCCTTCTT

EST sequence (targeted fragment marked with yellow):
TTTTTTTTTTTTTTTTTTACTTCAAACAGAATTTTCAGAGTTATAACACAGTGGACTGCAGAGAATATGGATAAAAATACGAATATCTAGGCAGAATTTTAAATCTGATAAAAAGGGCAATGCCAAAACTAAATACCTCTATATCATTTAACACACTGAATGCCATTGTGTTACAAATCAGTTGCAACACTTTTGCATTAAAACAGAATGAACTATGATGCCTCTAATTACAACAACAATTAATAGCAGCAGATCAAATCCAAAATGTCAATTATCACACAGCAGGAACTTTTCTTCCATCTTCAATGAAATAAATAGCATTTTCAGGTACATTTGGCCATGTTTCAGTGATGAATTCCACGATATCATACAAGATGTCTCCTTGAACATCAATCTGTTCTTTTTCAGTGGGACCCTTAACTACTGATGCTCCACTTGCAAATTTCTTCCCCAGTTTTTTTGAAGCATCACTCAATTTAATTCCAAACATATCAAGGCCTTTCACAATGGTAACACATTTGCGCTTATTTCGAACAACCTTCTCAACTACAACCTCTGGCTTTTCCTTCTTCTTTATCTTCCCGCCTGGTAATCGTTTTACTTCTTCTTGCTTTGATTCACTTCCTGCAGATGCAGTTGAATCGGCCTGATCACCCGAAATTTGCATGCCTTGAAGCTTCTCTCCAGTCTTCTCGGTTTCCTTGTCAGCTATCTCTTTAACGAGATCCGGATACAAATGAGGGGCATTTTGGATTATCCAAGGTTTGCATTTTTCAAAATCAGGGCCGAATTCACAGTATTCGGCTGGCAAGCTGCAGACTGCACAGTACAACACTTGCACTGGTCGTGGTTTCTCCGCCATTTCTTCTTCTACTTTGACTAATATAACC