| mature miRNA: TTCAAGAAAGCCGTGGAAAAG species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211890275|gb|CO480442.2|CO480442 GQ01810.T24_B11 GQ018: Clean ROOTS systems - N treatments Picea glauca cDNA clone GQ01810_B1 TTCAAGAAAGCCGTGGAAAAG EST sequence (targeted fragment marked with yellow): GTTTGAGGAGCTCGAATCGGAAGAAATAAACTCAGTGAGCACGATAGCTCCGATTCGCACTGTAGGCCCGCTCTTACCCTCGGCTTTCTTGGATGGACAGAATTCCAGAGACACAGACTGTAGTGCACATTTGTGGAAAGCCGCAAAGTGCATGGATTGGTTGAATACGAAGGAACCCGCAAGCGTAGTGTATGTTTCCTTCGGAAGCTTCGGGATTCTCTCTAAAGAACAAATTCATGAAATAGCCCTGGGGCTGAAGAGCAGTGGATATTCTTTCATATGGGTTATTCGTCCTCCTAACGGTGAAGAAAACTTGCCGGGGGGTTTCTTGAATGAAACTTCGGAGCAAGGGCTAGTTGTTCCTTGGTGTCATCAGCTAAAAGTGCTTTCTCATGCTTCTGTCGCTGCATTTATGACGCACTGTGGATGGAACTCGACGCTTGAAAGCCTCGCCTTGGGTGTCCCCATGTTGGCGGTTCCTCAGTGGACCGATCAGACGACTAATTCCAAATACATTGCAGAGAAATGGAAGACAGGATTGAGATTGCATAAACGATCAGCAGACGGAGTAGTGGGGAAGGAGGAAGTCGAGAAATGTATCAGGATGATTATGGAAACTGATGTAGGCGTTGAGCTGAGAGAAAACGCTCAGCGGTGGAAGACATTATCGACGGAGGCAATGATGGAAGGCGGATCTTCCGATAAGAATATTGAAGAATTCGTTGGAGAGATTGTTGGCAGAGCATCGCGATCGGTCATTGTCTGATTCAAGTTTTACTACCTGCTTAAATCATCTTTCCTGAATGAAGATGATGAATGTAAGATTGTTAGAAAAATCCTAATCTGATCCGCTATCGGTGACGTTTAGTTGTGAACCAGGGTGAATGTAAGAAA | |||||||||
gi|225917511|gb|GO371777.1|GO371777 GQ04109.B7P1_B08 GQ041 - Shoot tip - Dormant (Normalized) Picea glauca cDNA clone GQ04109_B0 TTCAAGAAAGCCGTGGAAAAG EST sequence (targeted fragment marked with yellow): TGTGATATCACGCACATCTCCTTCTTGTTGATAAGAGCTCAATATCATCCTCAAATTGTTCTCCAAATATAATTTCGGAATTGAAGTTTCCTAGGAAGATGGCAGTTGATAACAGCATTAAGGCAGTTACATATTCTGGCCCTGGGCATCTGGAAGGATTTTGTACATCAGTCAAGAGCATTCATGGTCCAAAGTTATCGAATCAATGCTTGGGCCTTCGCAAGGATGTCAATTTGAACAAGATTTCACTAGTGGCTTCTTATTGCAGTATTCAAGGGAATGGCCATTACAAGAGGGACAGAGATAGGCCAGAAAAGAGAAACGCTGTTGGATTGAATTTGGCCTACGGTTTGTTTGGCTTTCACGTTTTTAGTAATGGAAGCTGGCTTCGTTGGGTGTGGGGTCCAGAGTCAAAGGGATTTCACAATTTCACTGCTTTCTTGAATACAGCTGCTCGGGCATCTCCAGACATGAACTTTGATGGTTCTGCTAAATATGATAATCTCGATGACTCTTCTAATGCTTCAGACCAGGCACTTCTTGGCGACAGAGTATTGAAATTACTATCAGGTGCATGCTACCTCCCTCATCCAGACAAGGAGGCTACAGGTGGTGAAGATGCTCACTTTATTTGTGCAGATGAACAGGCTATCGGGGTTGCTGATGGTGTTGGAGGTTGGGCTCAGATGGGTGTTAATGCTGGAGACTATGCTCGTGAACTTATGTCTCATTCTGTGGCTGCAAT | |||||||||
gi|225918820|gb|GO371576.1|GO371576 GQ04107.B7.r_A10 GQ041 - Shoot tip - Dormant (Normalized) Picea glauca cDNA clone GQ04107_A1 TTCAAGAAAGCCGTGGAAAAG EST sequence (targeted fragment marked with yellow): ATACTGGGCTTCCTCCTCATACCTGGCTGTGTTTTTCCGTCGCCAGACGTTTCGTCTGAGAATGGATTGGTCGATATTTTTGTGATAATTGCTATGTTTATCGTTGTTATTCTCCTTATTTGCCGGTTGAAGTAGTTTTCTGCGTCTTTGTATGTGAACATGGCCCTAATCAGAGTCATCAGCAGGTGCTAAACTATAGCATTCCGTCTGCCGCTTGGGGCCAACAGCAAAGCTATGGCGATTGAATATAACATGAAGGTCCCGCTGGTTGCTTCATGCTATAAGTTTCGCCAACAGCAATTCTCTTGTATGTCTTTATTTTTGTTATCCTTTCTTTTGCTTTAGATCGGCTCTATTTTGCGAACGGGGTGTTTGTGTATATCAGGGCATACTGTCCCTTTGCATAGGGCCTAGATAGACGAATTCTGTCATTCGATGGGAGGAAACTTTTTATCTATGGCTTTCTTCAAATTCGAGGCAGCAACACCTCTGCATTTTATTGTTTTTATGATTGGTCTAATGTTCGTGTTCGTATAAAATCTTAAAGCCCAAAATTGCCTGGCTTGGTGTCTTTCTGTGGTTTTAGGGTTTATATTTTTCCGTCTTGTTTGCCTTGGATGCTTATCTTAACTTTTCATGAATCTCTTTTGGTTTTGCATCGCTGTAATTGCTGTTTCTTTGCTATATATTGCCAGGGTTCCATATCTTTTAATATTTATCATAGTCTGTATTTAGAGCTTTGAGGTTTTGCATTATATAGGGAACTGACAGTAGACCTGCCATTTAATGTTTTCCTAGATCAATATATATTACATCTAGCCTAGATTCATCTT | |||||||||
gi|211864630|gb|DV981287.2|DV981287 GQ0167.B3_F20 GQ016: Primary, secondary SHOOT -N fertil. Treatments Picea glauca cDNA clone TTCAAGAAAGCCGTGGAAAAG EST sequence (targeted fragment marked with yellow): TGAGAATTTATGAGTACTAGTCCCCCCACCTGTGCCTCCAAGTATGAAAGCAGGGTGGATGATAAGTGGGTATTCCCCAATAGATTTTGCTATCTTAAAACAGTGCTCCAAATTAGTTGTTATTCCAGAGGGGGGCACTTCACTCCAATCTTATCCATTGCCTTCTTGAACAACTCCCTGTCCTTCGCCTTCTTGATTGCATCCAACTTGGCACCTAAAGCTCCACACCGTATTTCTCCAAGGCTCCACGTTCCGCCAGAGCCACCACCAGATTCAGTGCAGTCTAGCCCCCCATAATTGGCAAGAGCGCATCGGGACTCTCCTTCTCCAGGAATTGCTCTACTAATTCTAGGGTCATGGGGATAATATATGTCTTGTCGGCCAAATTTGGATCCGTCATAATAGTGGCGGGATTAGAGTTAATTATAATCACCTTGTAACCTTCTTCCTTCAGGGCATTGCATGCCTGAGTTCCAAAGTAATCAAACTCACAGGCTTGGCCTATGACAATGGGTCCGGCCCCCAAGATCATAATTTTCTTCAAATCTGTGCACTTCCCACTTGTGGGGGAAGCGTATGAAAGAGCCGAACAAGCTACGGGACTGGAATGAAAAGTGGGTGATCAATTCCAATCTGTTGGACAGGTGATGATTCGCAAAGGAATGAGATCCAAACAATGCAACGACCATCGTTTTGAACTCCCAATTTTTCCACAGTTAAAATATATCCGTCCAGCTAAAACCAACTCAATCGACCTCCTTACGTTGTGAAGCCGTAGTTATCTTGTGAAATACAGGGTTTTGAGGACTG | |||||||||
gi|211883365|gb|CO481374.2|CO481374 GQ0166.B3_H17 GQ016: Primary, secondary SHOOT -N fertil. Treatments Picea glauca cDNA clone TTCAAGAAAGCCGTGGAAAAG EST sequence (targeted fragment marked with yellow): TCAGAGTCAAAGGGATTTCACAATTTCACTGCTTTCTTGAATACAGCTGCTCGGGCATCTCCAGACATGAACTTTGATGGTTCTGCTAAATATGATAATCTCGATGACTCTTCTAATGCTTCAGACCAGGCACTTCTTGGCGACAGAGTATTGAAATTACTATCAGGTGCATGCTACCTCCCTCATCCAGACAAGGAGGCTACAGGTGGTGAAGATGCTCACTTTATTTGTGCAGATGAACAGGCTATCGGGGTTGCTGATGGTGTTGGAGGTTGGGCTCAGATGGGTGTTAATGCTGGAGACTATGCTCGTGAACTTATGTCTCATTCTGTGGCTGCAATTCAAGAGGAACCTCGAGGTTCTATCAATCTTGCCAGGGTCTTGGAGAAAGCCTACTTAAGTACAAAAGCCAGGGGATCATCAACAGCTTGTATCTTGGCCCTATCAGATCAGGGTCTTCATGCTGTAAATTTGGGGGATAGTGGATTTCTAGTAGTAAGAGATGGATGCACGATCTTAAGGTCTCCTGTACAGCAACATGACTTCAATTTAACATTTCAACTTGAAAGTGGTGGTGGCAGTGATCTCCCCAGCTCTGCTCAGGTCTTCAACATTCAAGTTGCTCCTGGGGATGTAATTATTGCTGGTACAGATGGTCTCTTTGATAACTTATACAATAATGAAGTGACTGCTGTAGTAGTCCATGCTGTAAGAGCTGGACTAGGACCTCAGATTACAGCTCAGAAAATTGCTGCACTTGCCAGGCAGAGAGCACAGGATACACACCGGCAGACCCCGTTCTCCACTGCTGCCCAAGATGCAGGTTTTCGATATTATGGTGGGAAACTGGATGATATTACTGTTGTTGTGTCATATGTTTCAAGCTCTAATTCCAACT | |||||||||
gi|211902247|gb|CO481346.2|CO481346 GQ0166.B7_N18 GQ016: Primary, secondary SHOOT -N fertil. Treatments Picea glauca cDNA clone TTCAAGAAAGCCGTGGAAAAG EST sequence (targeted fragment marked with yellow): GGTAGAATTTTTCTTTACCAATATATCTTATGAGGACACCACAAGTTCGAGCAGATGGGTTTTAAATATTATTAGGTTTAATAGCGACGGGACTTTCACTTTTCGTATGAGTGAACCTGGTTGCATCCAATGTTGGGTCCAGCTGAGCACGACCAATCTCGTGAGCTGCTCAGAACCCCGTCCAAGTTCACCATAATCCTGATGGCCATCGCCTGGTTCTTGTGCAGTTTTCCGGGAAGAAGGTGTCGGATCGGATGACTGCATGGATTTCATCATCTGTAATGGGCGTTCTTGTGCAATAATTGCTTGCGAAAATTTCGTTGTTATGAGTCTTCTGTGGTGATAATAATGGCGATAACACAGCAGGAGAGAGTATAAGGACCATAGAAGTTAAAGATATTCGATGGATGGCCCTCCTTCTGCATAAGGAAAGAGAGACGAGTCCTTTCGGGTACAGTTGAAGAATTGGGGAAGCTTTGGGCCATTAGAGCGATAAAGAATTGGGGAAGAATATTTATTTATCAGTACGCTAAGCCGGAGAATGCTCTCATATTTTTCCACGGCTTTCTTGAACTTCCCGATCGGGAGTGTTGGCGACAGATCGCACCGCTAACAGATCCGCATACGAAGCTCAAGAAAGCCGTGGGAAGAATATTAAAGGGATTCAATTTTATTGCTTCTGCTGTGATCCGACTTGGTACTTCAGTTTCCAGATACGTAATATAACCCTATTCCAGGCACTCGGACAAGGTATCTTTACGTAAAAAA | |||||||||