| mature miRNA: TTCACATTCGGTCAACGTTC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|18018902|gb|BI137954.1|BI137954 F096P23Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TTCACATTCGGTCAACGTTC EST sequence (targeted fragment marked with yellow): CATCACTCGAACGTCGACCGAATGTGGGACTTGTGGAAGAAAATACCAGGAGGCAAGCGAAAGGATATCGAGGATCCTGATTGGCTTAATTCAGAGTTTCTTTTCTGGGATGAGAATAAAGAGCTGGTTCGAGTAAAGGTTAAAGATACTCTTGACACCAAGAAGCTAAGATATGGCTTTCAAGATGTTCCTATTCCTTGGCTGAAAGCTAGAGCAACACCAAAATTTACAAGGCAGGAAAAATCACGTCGTTCAGCTAAAAAAAGCGTTGTATTAACACCAATTAGTGCATTCCCTGTTGTCTTGGATAAAGTCATAAGTGTGGAGGTTTCCAGGCCAAAGAAATCAAGAAGCGCGACGGAGAAAGAAGATGAAGATGAAGTTTTGGTTATTGAAGGGATTGAGTATGACGAAAATCAATTAATTAAGTTCGATGTCCTCGTCAACGATGAACCTGATTCACCTGGTGGACCAGACAAGTCCGAGTTTGCAGGAAGTTTCATCAATGTGCCTCACAAGC | |||||||||
gi|18016692|gb|BI135764.1|BI135764 F058P09Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TTCACATTCGGTCAACGTTC EST sequence (targeted fragment marked with yellow): CATCACTCGAACGTCGACCGAATGTGGGACTTGTGGAAGAAAATACCAGGAGGCAAGCGAAAGGATATCGAGGATCCTGATTGGCTTAATTCAGAGTTTCTTTTCTGGGATGAGAATAAAGAGCTGGTTCGAGTAAAGGTTAAAGATACTCTTGACACCAAGAAGCTAAGATATGGCTTTCAAGATGTTCCTATTCCTTGGCTGAAAGCTAGAGCAACACCAAAATTTACAAGGCAGGAAAAATCACGTCGTTCAGCTAAAAAAAGCGTTGTATTAACACCAATTAGTGCATTCCCTGTTGTCTTGGATAAAGTCATAAGTGTGGAGGTTTCCAGGCCAAAGAAATCAAGAAGCGCGACGGAGAAAGAAGATGAAGATGAAGTTTTGGTTATTGAAGGGATTGAGTATGA | |||||||||
gi|18018184|gb|BI137236.1|BI137236 F082P70Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TTCACATTCGGTCAACGTTC EST sequence (targeted fragment marked with yellow): CATCACTCGAACGTCGACCGAATGTGGGACTTGTGGAAGAAAATACCAGGAGGCAAGCGAAAGGATATCGAGGATCCTGATTGGCTTAATTCAGAGTTTCTTTTCTGGGATGAGAATAAAGAGCTGGTTCGAGTAAAGGTTAAAGATACTCTTGACACCAAGAAGCTAAGATATGGCTTTCAAGATGTGCCTATTCCTTGGCTGAAAGCTAGAGCAACACCAAAATTTACAAGGCAGGAAAAATCACGTCGTTCAGCTAAAAAAAGCGTTGTATTAACACCAATTAGTGCATTCCCTGTTGTCTTGGATAAAGTCATAAGTGTGGAGGTTTCCAGGCCAAAGAAATCAAGAAGCGCGACGGAGAAAGAAGATGAAGATGAAGTTTTGGTTATTG | |||||||||
gi|60703780|gb|DN493590.1|DN493590 F124P67.5pR Populus flower cDNA library Populus trichocarpa cDNA clone F124P67 5', mRNA seque TTCACATTCGGTCAACGTTC EST sequence (targeted fragment marked with yellow): TTTTGCTTTGCCTTTCTGGAACTGGGATTCTCCTGGTGGCATGCAATTGCCAGCCATGTATGCCGATCCTAATTCACCACTGTATGATAGTCTCCGCAACAAGAATCACCAACCACCAACATTGCTTGATCTTGATTGGAGTGGCACAGACACCCCCACTTCAAACGAAGAGCAGTTATCTAGCAACCTTACCATTATGTACAGGCAAATGGTGTCCAATGGCAAGACTCCTAGGCTCTTTTTCGGTGGTGCATACCGTGCTGGTGATGAACCAGGCCCTGAACCAGGTCCAATTGAGAATATTCCACACGGTCCAGTTCATATCTGGACAGGTGACAACACTCAACCAAACTCTGAAGACATGGGCAATTTCTACTCAGCTGCTAGAGATCCAATCTTTTTCTGTCATCACTCGAACGTTGACCGAATGTGGTCAGTATGGAAGACATTAGGAGGCAGGCGAACTGACCTGACTGACCCTGATTGGCTTAATGCCTCATTCTTTTTCTACGATGAAAATGCCAATCCTGTTCGTGTCAAGGTTAGAGATTGCCTGGATTCAAGAAACCTAGGATATGTTTATCAAGATGTTGAAATTCC | |||||||||
gi|18017652|gb|BI136704.1|BI136704 F072P29Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TTCACATTCGGTCAACGTTC EST sequence (targeted fragment marked with yellow): CATCACTCGAACGTCGACCGAATGTGGGACTTGTGGAAGAAAATACCAGGAGGCAAGCGAAAGGATATCGAGGATCCTGATTGGCTTAATTCAGAGTTTCTTTTCTGGGATGAGAATAAAGAGCTGGTTCGAGTAAAGGTTAAAGATACTCTTGTACACCAAGAAGCTAAGATATGGCTTTCA | |||||||||
gi|18017669|gb|BI136721.1|BI136721 F072P63Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TTCACATTCGGTCAACGTTC EST sequence (targeted fragment marked with yellow): CATCACTCGAACGTCGACCGAATGTGGGACTTGTGGAAGAAAATACCAGGAGGCAAGCGAAAGGATATCGAGGATCCTGATTGGCTTAATTCAGAGTTTCTTTTCTGGGATGAGAATAAAGAGCTGGTTCGAGTAAAGGTTAAAGATACTCTTGACACCAAGAAGCTAAGATATGGCTTTCAAGATGTTCCTATTCCTTGGCTGAAAGCTAGAGCAACACCAAAATTTACAAGGCAGGAAAAATCACGTCGTTCAGCTAAAAAAAGCGTTGTGTTAACACCAATGAGTGCATTCCCTGTTGTCTTGGATAACGTCATCAGTGTTGACGTCTCTCCAGGCCAAAGAAATCAAGAAGCGCGACGGAGAAAGAAGATGAAGATGAAGTTTTGGTTATTGAAGGGATTGAGTATGAAGAAAATCAATTAATTAAGTTCGATGTCCTCGTCAACGATGAACCTGATTCACCTGGTGGACCAGACAAGTCCGAGTTTGCAGGAAGTTTCATCAATGTGCCTCACAAGCATGCAA | |||||||||
gi|18018249|gb|BI137285.1|BI137285 F083P86Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TTCACATTCGGTCAACGTTC EST sequence (targeted fragment marked with yellow): CATCACTCGAACGTCGACCGAATGTGGGACTTGTGGAAGAAAATACCAGGAGGCAAGCGAAAGGATATCGAGGATCCTGATTGGCTTAATTCAGAGTTTCTTTTCTGGGATGAGAATAAAGAGCTGGTTCGAGTAAAGGTTAAAGATACTCTTGACACCAAGAAGCTAAGATATGGCTTTCAAGATGTTCCTATTCCTTGGCTGAAAGCTAGAGCAACACCAAAATTTACAAGGCAGGAAAAATCACGTCGTTCAGCTAAAAAAAGCGTTGTATTAACACCAATTAGTGCATTCCCTGTTGTCTTGGATAAAGTCATAAGTGTGGAGGTTCCAGGCCAAAGAAATCAAGAAGCGCGACGGAGAAAGAAGATGAAGATGAAGTTTTGGTTATTGAAGGGATTGAGTATGAAGAAAATCAATTAATTAAGTTCGATGTCCTCGTCAACGATGAACCTGATTCACCTGG | |||||||||
gi|38574719|gb|CK090394.1|CK090394 F002P63.3pR Populus flower cDNA library Populus trichocarpa cDNA clone F002P63 3', mRNA seque TTCACATTCGGTCAACGTTC EST sequence (targeted fragment marked with yellow): TTTTATTGTCATCACTCGAACGTCGACCGAATGTGGGACTTGTGGAAGAAAATACCAGGAGGCAAGCGAAAGGATATCGAGGATCCTGATTGGCTTAATTCAGAGTTTCTTTTCTGGGATGAGAATAAAGAGTTGGTTCGAGTAAAGGTTAAAGATACTCTTGACACCAAGAAGCTAAGATATGGCTTTCAAGATGTTCCTATTCCTTGGCTGAAAGCTAGAGCAACACCAAAATTTACAAGGCAGGAAAAATCACGTCGTTCAGCTAAAAAAAGCGTTGTATTAACACCAATTAGTGCATTCCCTGTTGTCTTGGATAAAGTCATAAGTGTGGAGGTTTCCAGGCCAAAGAAATCAAGAAGCGCGACGGAGAAAGAAGATGAAGATGAAGTTTTGGTTATTGAAGGGATTGAGTATGAAGAAAATCAATTAATTAAGTTCGATGTCCTCGTCAACGATGAACCTGATTCACCTGGTGGACCAGACAAGTCCGAGTTTGCAGGAAGTTTCATCAATGTGCCTCACAAGCATGCAAAAAAATCAAAGACAACTATGGTATTGGGGATTACAGGATTGTTGGAAGATCTGGAAGCTGAAGGAGATGATACCCTTGTGGTGACTTTAGTGCCTCGGACTGGTGGTGATTCTGTTACTGTTGCTAATGTCAAGATTGAGTTTGTCGCTGACTGATCATGGTGATGAGAGGACATATGCTACCATTTTCTTTTCTTTTCTTTTTTTCCTTTCGCCTTTTCTTGTTTTCTCTCTTTTCTATGCTAGTATTCAGTGAGTTCTCTTTTTTCTTTCAAGATGCTCAACTAATGGACCGTATTTCAATTTAGATAAAAAAAAAAAAAAAAAA | |||||||||
gi|18017880|gb|BI136932.1|BI136932 F076P95Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TTCACATTCGGTCAACGTTC EST sequence (targeted fragment marked with yellow): ACTCGAACGTCGACCGAATGTGGGACTTGTGGAAGAAAATACCAGGAGGCAAGCGAAAGGATATCGAGGATCCTGATTGGCTTAATTCAGAGTTTCTTTTCTGGGATGAGAATAAAGAGCTGGTTCGAGTAAAGGTTAAAGATACTCTTGACACCAAGAAGCTAAGATATGGCTTTCAAGATGTTCCTATTCCTTGGCTGAAAGCTAGAGCAACACCAAAATTTACAAGGCAGGAAAAATCACGTCGTTCAGCTAAAAAAAGCGTTGTATTAACACCAATTAGTGCATTCCCTGTTGTCTTGGATAAAGTCATAAGTGTGGAGGTTTCCAGGCCAAAGAAATCAAGAAGCGCGACGGAGAAAGAAGATGAAGATGAAGTTTTGGTTATTGAAGGGATTGAGTATGAAGAAAATCAATTAATTAAGTTCGATGTCCTCGTCAACGATGAACCTGATTCACCTGGTGGACCAGACAAGTCC | |||||||||
gi|18017999|gb|BI137051.1|BI137051 F079P20Y Populus flower cDNA library Populus trichocarpa cDNA, mRNA sequence TTCACATTCGGTCAACGTTC EST sequence (targeted fragment marked with yellow): CATCACTCGAACGTCGACCGAATGTGGGACTTGTGGAAGAAAATACCAGGAGGCAAGCGAAAGGATATCGAGGATCCTGATTGGCTTAATTCAGAGTTTCTTTTCTGGGATGAGAATAAAGAGCTGGTTCGAGTAAAGGTTAAAGATACTCTTGACACCAAGAAGCTAAGATATGGCTTTCAAGATGTTCCTATTCCTTGGCTGAAAGCTAGAGCAACACCAAAATTTACAAGGCAGGAAAAATCACGTCGTGCAGCTAAAAAAAGCGTTGTATTAACACCAATTAGTGCATTCCCTGTTGTCTTGGATAAAGTCATAAGTGTGGACGGTTTCAGGCCAAAGAAATCAAGAAGCGCGACGGAGAAAGAAGATGAAGATGACGTTTCGGTTATTGAAGGGATTGAGTATGAAGAAAATCACTTACTTCAGTTCGATGTCCTCGTCAACGATGAACCTGATTCACCTGGTGGACCAGACAAGTCCGAGT | |||||||||