| mature miRNA: TTCATGTGTGGCAAGAATTC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73877460|gb|DT480198.1|DT480198 WS02528.BR_D09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02528_D09 5', mRNA sequence TTCATGTGTGGCAAGAATTC EST sequence (targeted fragment marked with yellow): GGCTTTGTTCTTAAATTTCAAAGGAAGTCCTTACACGATTCATAATGGGTAGGGAGAACAGAGCCGCTTGGAAAGCCAACTACTTCGTTAAAGTTGTTCAACTTTTGGATGAATTCCCAAAATGTTTCATTGTCGGTTGCGATAATGTTGGTTCACGCCAAATGCAAACCATTCGTACATCATTGCGTGGTATGGGTGTTGTATTGTGCGGTAAAAATACAATGATGCGTAAAGCTATCCGTGGTCATTTGGAAAACAATGCTGATTTGGAAAAAATCTTGCCACACATCAAAGGCAACGTTGGTTTCGTTTTCACCAAAGGTGATTTGGCTGAAATTCGCGAAAAATTGACCGAAAGCAAAGTCCGTGCCCCAGCCAGAGCTGGAGCCATCGCTCCACTTGATGTCATTATCCCAGCGCAAAATACCGGTTTGGGTCCAGAAAAGACATCTTTCTTCCAAGCTTTGTCCATTCCAACCAAAATTTCAAAGGGTACAATTGAAATCATCAACGATGTGCCAATTCTGAAACCGGGCGACAAAGTCGGTGCTTCCGAAGCTACATTGTTGAACATGTTGAACATCTCTCCATTCTCATATGGTTTGGTTATTCAACAAGTTTACGATTCGGGTTCAATCTTCTCACCAGATATTTTGGACATTAAACCAGAAGATTTGCGTGCCAAATTCCAAGCTGGTGTTGCCAATTTGGCGGCCGTTTGTTTGCAAATTGGATATCCAACAATTGCATCGGCTCCACACAGCATTGCTAACGGTTTTCAGAATTTGTTGGCATTGGCCGCAACAACTGATGTTGAATTCAAAGAAGCTTCTCTTTTGAAAGAATTTTTGGCTGATCCATCGAAAATCACCGTTGCAGCTGCTCCAGCTGCTGCTGCTGAT | |||||||||
gi|73886164|gb|DT488902.1|DT488902 WS02537.B21_M04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02537_M04 3', mRNA sequence TTCATGTGTGGCAAGAATTC EST sequence (targeted fragment marked with yellow): AAAAAATCTTGCCACACATCAAAGGCAACGTTGGTTTCGTTTTCACCAAAGGTGATTTGGCTGAAATTCGCGAAAAATTGACCGAAAGCAAAGTCCGTGCCCCAGCCAGAGCTGGAGCCATCGCTCCACTTGATGTCATTATCCCAGCGCAAAATACCGGTTTGGGTCCAGAAAAGACATCTTTCTTCCAAGCTTTGTCCATTCCAACCAAAATTTCAAAGGGTACAATTGAAATCATCAACGATGTGCCAATTCTGAAACCGGGCGACAAAGTCGGTGCTTCCGAAGCTACATTGTTGAACATGTTGAACATCTCTCCATTCTCATATGGTTTGGTTATTCAACAAGTTTACGATTCGGGTTCAATCTTCTCACCAGATATTTTGGACATTAAACCAGAAGATTTGCGTGCCAAATTCCAAGCTGGTGTTGCCAATTTGGCGGCCGTTTGTTTGCAAATTGGATATCCAACAATTGCATCGGCTCCACACAGCATTGCTAACGGTTTCAAGAACTTGCTGGCATTGGCCGCAACAACTGATGTTGAATTCAAAGAAGCTTCTCTTTTGAAAGAATTTTTGGCTGATCCATCGAAATTCGCCGTTGCAGCTGCTCCAGCTGCTGCTGCTGATACCGGTGCTGCACCAGCTAAGAAAGAAGAGAAGAAGGAAGAATCAGAAGAGGAAGAAGACGATGACATGGGCTTCGGTCTTTTCGATTAAACATCTCATCATCGACACACTCCGATTTGGTTTTATACACATTTAATATTCAATTGTTGATGATTGTATTGTAAATACTCGTTACGATGCTCGGAACATCTATGGCGACATACAAGACGTCTTCACGTTGAAATCTTTAAATTTATCACCAAAATCGCAGCCAACAAACAAAACATTGCCCCAAATGTTGAACATAAAAAAAAAAAAAAAAA | |||||||||
gi|52399807|gb|CV238291.1|CV238291 WS0126.B21_A18 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS0126_A18 3', mRNA sequence TTCATGTGTGGCAAGAATTC EST sequence (targeted fragment marked with yellow): GAGGCTGGATGCTTATCTGGAGTTTCAAGCTGTGAATTCTGCTCTTCTGAAAAGCTATGGTCTTGTTCATGAAGATTGTATAGCGAAGATGCGGTTGATATCATTGGTGGATCTTGCCTCACATGAATCTGGTCGAATTCCATATACCCTAATCAAAGATACTCTTAGGATCAATGATGATGAGGTGGAATTATGGGTAGTGAAGGCATTAACTTCCAAGTTAATTGCCTGTAAAATGGACCAGATGAATCAAGTTGTGCTTGTGAGTTCTTGTACTGAGCGTGTATTTGGGCGACAACAGTGGGGGGTGCTTAGGACAAAGCTTGGTACATGGAGGGATAATATTGGAAATGTCATAAACACCATCCAAGCTAACAAGATCACCGAAGACAGCTCACAGGCAGTGCAGGGATTGATGATTCGTTAGGGGTCTTTTTCTCTGGCTATTTATTTATAAGGTCAATCCATAGCTGGAGATGGAGCCGAGTCCGTTGGAATGCATCAGTACTTTTGGTTGTCATTTACTTTAGTTGGAAATTGATAGTGTATTTGGGAAAATTTTGAGAGAGGAGGTCTAGGCGTTTTAACATTTACCATGCGAAGTGATTTTATGTAACAAATTCAATGTCTACTCTCTTTTATGTGGCAACTTTGGTTTCACTGTCACGANATATGCTTTTTGAGCCAAAAAAAAAAAAAAAA | |||||||||