miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TTCCACAGCTTTCTTGAAC
species: Populus trichocarpa x Populus deltoides
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|28605208|gb|CA821659.1|CA821659 RSH05G11 two-month-old roots from clone 'Beaupre' grown for 19 days under restricted irrigati 

TTCCACAGCTTTCTTGAAC
.|||| ||||||||||  |
GAGGTATCGAAAGAACGAG

EST sequence (targeted fragment marked with yellow):
TACGGCCGGGACTTCATGGAAACNTCTGCTTTGGAAGCTACTAATGTTGACAGTGCATTTGCTGAAGTGCCTACTCAGATCTATCGCATTGTGAGCAAGAAAGCTATGGAGACCGGTGATGAGGCAGCTGCTTCAGCTGTTCCATCCAAAGGTGAGAAAATCGATGTTAGTAAAGATGTTTCTGCTATGAAGAGAGTAGGGTGCTGCTCAAGCTAGGATTCTAATCTGATTATTACATTGTTGAGATGTGGCTGGTTTGATTAGCTGCGTCTGTTACTATGTACACCATTATTGTGTAAAATTTTCTCAAAGATGCCAACTTAGGAGGTCGGTGGATTGATTTTATTATGATCTTAAAAAGTTTTTCCTCCTCTGTTGTAGCTGACGAACAGCTTAACTAGGAATGAAGTGTTACACTTATGGCTTTCAAAATGGTATTTAATGGAACTCATATTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAACATTTTTNGCCCCCCCCCGCCCAATAAAAATTAAAACCAAACCCCCTTTTTCCTTCCGGGGGGGGGGGGNNNNNNNAAAAAATCT


gi|28608754|gb|CA825205.1|CA825205 R55A12 two-month-old roots from clone 'Beaupre' Populus trichocarpa x Populus deltoides cDNA 

TTCCACAGCTTTCTTGAAC
.||||||.|||| ..||||
GAGGTGTTGAAAAGGCTTG

EST sequence (targeted fragment marked with yellow):
TCCACAAATTTTCAATGGCAAACCCTAAGGTCTACTTCGACATGACAATAGGCGGCGTCCCAGCCGGCCGGATCGTGATTGAGCTGTTCGCGGACACAACTCCACGAACCGCAGAGAACTTCAGGGCTCTTTGCACTGGAGAGAAAGGCAAAGGCCGAAGCGGCAAGCCTTTACACTACAAAGGCTCGACTTTTCATCGAGTGATCCCTGGATTCATGTGTCAAGGAGGGGATTTTACTGCGGGGAATGGAACCGGAGGAGAATCAATCTATGGAGCGAAATTTGCTGATGAGAATTTCATAAAGAAACATACTGGGCCTGGAATTCTATCTATGGCAAATTCTGGGCCTGGCACTAATGGGTCTCAGTTTTTCATATGTACAGATAAGACTGAATGGCTTGATGGGAAACATGTGGTGTTCGGAAAAGTTGTGGAGGGTATGAATGTTGTCAAGGCTATAGAGAANGTNGGATCTAGTGGTGGAAGGACCTCCANGCCTGTTGTTGTTGCTGATTGCGGCCAGCTTTCTTGAGNGACACA


gi|46950304|gb|CN550104.1|CN550104 GQ0242.B3_M12 GQ024 Populus trichocarpa x Populus deltoides cDNA clone GQ0242_M12 5', mRNA se 

TTCCACAGCTTTCTTGAAC
.|||| ||||||||||  |
GAGGTATCGAAAGAACGAG

EST sequence (targeted fragment marked with yellow):
CTCAACTGAGGATGGAAAATCCTTTGCTGAGAGGGAGTCGCTCTACTTCATGGAAACATCTGCTTTGGAAGCTACTAATGTTGACAGTGCATTTGCTGAAGTGCTTACTCAGATCTATCGTATTGTGAGCAAGAAAGCTATGGAGACCGGTGATGAGGCAGCTGCTTCAGCTGTTCCATCCAAAGGTGAGAAAATTGATGTTAGTAAAGATGTTTCTGCTATGAAGAGAGTAGGGTGCTGCTCAAGCTAGGATTCTAATCTGATCATTACATTGTTGAGATGTGGCTGGTTTGATTTGCTGCGTCTGTTTCTATGTACACCATTATTGTGTAAAATTTTCTCAAAGATGCCAACTTAGGAGGTCGGTGGCTTGATTTTATTATGATCTTAAAAAGTTTTTCCTCCTCTGTTTTAGCTGATGAACAGCTTAACTAGGAATGAAGTGTTACACTTATGGCTTTCAA


gi|73928437|gb|DT511747.1|DT511747 WS02417.B21_F03 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02417_F0 

TTCCACAGCTTTCTTGAAC
.|||| |||||| |..|||
GAGGTTTCGAAACAGTTTG

EST sequence (targeted fragment marked with yellow):
GACTGAGTCCTGTAACTTACCATGCACTTATTCGAGGGTATTGCAAACTAGACCAGTTTGACAAAGCTTTGGAGTTGTTGGCAGAGATGGAGAAGTTTGGGGTTCAACCTAATGCAGATGAGTACAATAAGCTGATTCAATCTCTTTGCTTAAAGTCCTTAGATTGGGGAACAGCAGAGAAGCTGTTTGCAGAAATGAAGGAGAAAGGCTTGTATCTAAATTCAATCACCCGGAGCCTTATAACCGCAGTCAAGGAGCTGGAGCAGGAGGGGTTAGCAAAAGAAGTAAGCATTGAAGTGTGAATTTTTAGTGTGGTTATCTTGTGTAACTTTCAAATGTTCCAAGTCTTTACTTTGTAGTTAGTGTCTTGCCCTTTTCCATAAAATAACGAGTGAAACTCTACAGTTCAATTTAAAAAAAAAAAAAAAAAAAA


gi|46840135|gb|CN521766.1|CN521766 GQ0114.B3_G21 GQ011 Populus trichocarpa x Populus deltoides cDNA clone GQ0114_G21 5', mRNA se 

TTCCACAGCTTTCTTGAAC
|.||||||||||||||| |
AGGGTGTCGAAAGAACTCG

EST sequence (targeted fragment marked with yellow):
GTTTAATCTCGCAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCCTATATATATAAATATATGTATGTATAGCGCCATGGAAGCTCAAGAAAGCTGTGGGAGAACATGGCAATTCAGGATTTTTTTGGGCTCTTTTCTTGCTGTTACGGTCAAGACCTCTCCTTTCCTTCATGGAATGCATACAAAAACCTTTCATCTTCTTCCTCCCTGTATGGATCGTGGATGAGCTCGTGCTTTGAAAGAAGAAGNACAACTACACCACAAATTAAAGCTAGCTNNNNNNGTGTTTATGGNNNNTCATAATTGNAGTNGGGGAAAAGANNTATANGATAAAAATAATGAAGCTTTG


gi|73932386|gb|DT515696.1|DT515696 WS02429.B21.1_E11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02429_ 

TTCCACAGCTTTCTTGAAC
.||||||||||.  |||||
GAGGTGTCGAAGTTACTTG

EST sequence (targeted fragment marked with yellow):
ACAACAGGTAGCAGCTGATCTCTTGAAGCAATACAAGGAGAAGTTCCAAGGTGGGACTCTGGCTGTTACCTGGAACTATTTGAGAGAATCGATGAACACATACCTCTCTCAGCCAAATCCTGTAACATCACGTTGGGAAGGTGCAGAACACTTGCAAGACCCTAAATTCCAGTTAGATGCCTTCAGATACCGGACATCTAGATTGCTTCAAAGTGCTGCTGTCCGACTTCGCAAGCACTCTAAAACTCTTGGGGGCTTTGGAGCTTGGAATCGATGCTTGAATCACCTTCTCACGCTTGCAGAGTCCCATATTGAGTCTGTCATCCTTGCAAAGTTCATTGAAGCTGTGGAGAAATGCCCTGATGCAAGTTCGCAGGCTGCTTTGAAACTTGTCTGCGATCTTTATGCCTTGAATCGAATCTGGAATGACATAGGAACCTATCGAAACGTTGACTATGTGGCACCAAACAAAGCTAAGGCAATCCACAAGCTCACAGATTACCTAAGTTTCCAAGTGAGAAATATTGCGAAGGAGCTTGTTGACGCATTTGATCTTCCTGATCACGTTACAAGGGCCCCAATTGCCATGCAGTCGGAAGCATATGCTCGGTACACGCACCATGTTGGGTTCTGATTTCAATAGAAAGCAAAGGGCAGTGAAGGATAAAGAGCTTGTGTGAGAGTACATTCCATATTACTTTTTAAAGTGATTTTTATTTGTAAATATATTAAAATAATATTTTTTTTATTTTTAAAATACAAAAAAAAAAAAAAAAAA


gi|52531160|gb|CV278185.1|CV278185 WS0145.B21_L08 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides cDNA clone WS0145_L08 3', 

TTCCACAGCTTTCTTGAAC
.||||||.|||| ..||||
GAGGTGTTGAAAAGGCTTG

EST sequence (targeted fragment marked with yellow):
GCTAAGGTCTACTTCGACATGACAATCGGCGGCGTCCCAGCCGGCCGGATCGTGATTGAGCTGTTCGCGGACACAACTCCACGAACCGCAGAGAACTTCAGGGCTCTTTGCACTGGAGAGAAAGGCAAAGGCCGAAGCGGCAAGCCTTTACACTACAAAGGCTCGACTTTTCATCGAGTGATCCCTGGATTCATGTGTCAAGGAGGGGATTTTACTGCGGGGAATGGAACCGGAGGAGAATCAATCTATGGAGCGAAATTCGCTGATGAGAATTTCATAAAGAAACATACTGGGCCTGGAATTCTATTTATGGCAAATTCTGGGCCTGGCACTAATGGGTCTCAGTTTTTCATATGTACAGATAAGACTGAATGGCTTGATGGGAAACATGTGGTGTTCGGAAAAGTTGTGGAGGGTATGAATGTTGTCAAGGCTATAGAGAAGGTTGGATCTAGTGGTGGAAGGACCTCCAGGCCTGTTGTTGTTGCTGATTGCGGCCAGCTTTCTTGAGGGACCCAGGATTTGTGATATGCTGGTGTGTTTATGTATCTATCTACATAACGAGTCTTTAATTGGACTCTGATTGTGTTTCTTCAAGTGTTGCTGTCCTTTAATGATCCTAATGAGATTTCCAGATATAATAATTGAATGAATCAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAA


gi|28604892|gb|CA821349.1|CA821349 RSH01G05 two-month-old roots from clone 'Beaupre' grown for 19 days under restricted irrigati 

TTCCACAGCTTTCTTGAAC
.||||||.|||| ..||||
GAGGTGTTGAAAAGGCTTG

EST sequence (targeted fragment marked with yellow):
TCCACNAATTTTCAATGGCAAACCCTAAGGTCTACTTCGACATGACAATAGGCGGCGTCCCAGCCGGCCGGATCGTGATTGAGCTGTTCGCGGACACAACTCCACGAACCGCAGAGAACTTCAGGGCTCTTTGCACTGGAGAGAAAGGCAAAGGCCGAAGCGGCAAGCCTTTACACTACAAAGGCTCGACTTTTCATCGAGTGATCCCTGGATTCATGTGTCAAGGAGGGGATTTTACTGCGGGGAATGGAACCGGAGGAGAATCAATCTATGGAGCGAAATTTGCTGATGAGAATTTCATAAAGAAACATACTGGGCCTGGAATTCTATCTATGGCAAATTCTGGGCCTGGCACTAATGGGTCTCAGTTTTTCATATGTACAGATAAGACTGAATGGCTTGATGGGAAACATGTAGTGTTCGGAAAAGTTGTGGAGGGTATGAATGTTGTCAAGGCTATAGAGAAGGTTGGATCTAGTGGTGGAAGGACCTCCAGGCCTGTTGTTGTTGCTGATTGCGGCCAGCTTTCTTGAGGGACACAGGATNTGTGATATGCTGGTGTGTTTATGTATCTATCTACATAACGAGTCTTTAATGGGACTCTGATTGTGTTNCTNCCC


gi|73929531|gb|DT512841.1|DT512841 WS02420.B21_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02420_G1 

TTCCACAGCTTTCTTGAAC
.||| |||||||||||||
GAGGAGTCGAAAGAACTTT

EST sequence (targeted fragment marked with yellow):
TTTCAAGAAAGCTGAGGAGCTTTCAGTTCTCTGTGATGCTGATGTTGCTCTCATCATCTTCTCCTCCACTGGCAAGCTCTTTGAGTTCTCCAGCTCAAGCATGAAGGAAATACTGGAAAGGCATAATTTGCACTCGAAGAATCTTGAGAAGCTGGAGCAACCATCTCTTGAGTTGCAGCTGGTAGAAGACAGCACCTGCTCCAGGTTGAGTAAGGAAGTTGCGGAGAAAAGCCATCAGCTGAGGCAAATGAGAGGGGAAGATCTGCGAGGATTGGATATAGACGAATTGCTGCAGCTAGAGAAGTCTCTTGAGGCTGGATTGAGCTGTGTGATAGAGAAGAAGGGTGAGAAGATTATGAACGAGATCACTGATCTTCAAAGAAAGGGAATGCAATTGATGGAAGAGAATGAGAGACTCAAACAGTAAGTGGTGGAGATATCTAATGGCCGAAAGCATGTTACAGCTGATTCAGAGAATGTTGGTTACGAGGAAGGGCAGTCATCAGAGTCCGTAACCAATGTCTGCAACTCAAATGGCCCTCTACATGATTATGAAAGCTCTGATACATCCCTCAAGTTGGGGTTGCCATTTTCAAACTGAATGGGAGATCGCAGGGAGATTTCTTCACCAGCAAATGCGGACACAAATAATTGCTTGTATATATAAATAGAACAGGAACATAACTCAGGCACATAGTACTTGTGTACCTTGGACAAGTGCGGGGAAACATTTCTGTTTCCTTTACCGGATGCTACTCATGGAGTTTCTCTTATTGTGTGCACAAGGGTTTGCAGCCCATTTTGTTGCATAAGGAAGAAGAACAGAAAAAAACCAAAAAAAAAAAAAAAAAA


gi|73924078|gb|DT507388.1|DT507388 WS02418.BR_C01 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02418_C01 

TTCCACAGCTTTCTTGAAC
.|||| |||||.||||||
GAGGTTTCGAAGGAACTTC

EST sequence (targeted fragment marked with yellow):
GGACGGATATAACTTTGAATTTGCAGCGAAGATGTAAATTAGCAGAAGGGTGGATGAGTAAACCGATTTGGAAATCAGCTGACCCTCGATTTGTTTGGAACAAAAGTCTTTTGGAAGAACTTATTGAGTTTAAGCTTGATGAGTTCATCATTCCTCTACTTCAAGGAAGCTTTGGAGCTGCACAGCTAAAGATAAAAGAGTCATCTGCCACAGTTACATTAGTTTCAAGAAGGTGTACTCGGCGTCTAGGGACACGAATGTGGAGGAGAGGAGCTAACCTTGAAGGAGACACTGCTAACTTTATTGAAACTGAGCAATTGCTGGAGCTTGAAGGTTACAGATCTTCATTGTTGCAGATTCGAGGTTCGATTCCCCTACTTTGGGAGCAGATTGTTGATTTGAGCTATAGACCATGTCTTAGAATCATTAGTCATGAGCAGACGTCAAAAGTTGTTGAGCGCCATTTCCATGATCTTTACCAACGATATGGGGATACCATGGCAGTTGACTTAACCAATAAACATGGTGATGAAGGTCAATTAAGCGCAGCTTATGCTGCTGAAATGCAAAAGCTTCCAAATGTGAGATATGTTCCGTTTGATTTTCATCATGTCTGTGGCAACTCAAACTTTGATAATCTTCAAATTCTATATAATCAAATCTTAGACGACTTCCAAAAGCAAGGATATATCCTCATAGACGCAGAAGGAAACATATTGGAAGAGCAGAAAGGCATTATTAGATCTAACTGCATTGACTGCTTGGATCGAACAAATGTTACCCAGAGTTTTCTGGGTCAGAAGTCTTTAACCATGCAATTGCAAAGAATAGGAGTGCTTTCTT


gi|28606940|gb|CA823391.1|CA823391 R25D11 two-month-old roots from clone 'Beaupre' Populus trichocarpa x Populus deltoides cDNA 

TTCCACAGCTTTCTTGAAC
||||||| |||.|.| |||
AAGGTGTAGAAGGGAGTTG

EST sequence (targeted fragment marked with yellow):
TNATGGCCGGGGAGAAATGGAAGGTGTTGGGTTGTCGGAACCTCTGGGAGCATGNTTATCTTTTCATTGATTTCAGCTCGTACTATGGAGCAGAGGTTGAAGGGTTTGGTAAAATTGACGACTCTGACGCCCTTTGCCGTTACCTGCTTGATCAGGCCCAGGTTGCATTAGTTCCAGGGGTTGCATTTGGAGATGACAGCTGCATACGTATATCCTATGCAGCTTCTCTGACCACCCTACAGGCAGCTGTAGAGAGAATTAAGAAAGCGCTTCTCCCACTCAAGTCTGCCGTCCCTGTGTAATGTAGATGAATTGCAATTGTTGTACTCTTTTAGAGATTAAAAAAATGGGCACTTCATTATTGATTGTTACAAATAAAGTGCCATTGTCATTGAGGGTCATTTGTTTGCTATGATCATTGGTTTTGCACTAGCCTTGTTGAGGGAAGATGTGGAAGAATTCCAATGTCTCTGTACAGTGTTTGCTTTCCACCATAAAATTGTTGCATCTGTATCAGGATGACATTTGTTTCGTATTTATTCAGTGAGATTGTNTCACAAAAAAAA


gi|52532868|gb|CV279893.1|CV279893 WS0133.B21_N18 PTxD-IL-FL-A-4 Populus trichocarpa x Populus deltoides cDNA clone WS0133_N18 3 

TTCCACAGCTTTCTTGAAC
 |||||||||| |||.||
CAGGTGTCGAACGAATTTT

EST sequence (targeted fragment marked with yellow):
AAGTCCAAGAAACCCATTTATTCAATGAAGAAAGGACAGATTGTGAGAGTGGATAAAGAGAAGTACCTCAATAGCGTAAATTATCTATCTGTTGGGCATCCACCTTACTACAAGGGCTTGGACTACATTTATGAAGACCGTGGTGAGGTCTTGGATTTACGGATATTTGAGACTGGAGAGTATGCTCTTGTTTCATGGGTTGGAGTCCCCACTGCTCCGGCTTGGCTTCCAACAGACATGCTTATCAAGTCCGAGAAGCTGAATTACGAGAGATTGTGAGATTTAGGCTACTGAAGCAGAATCCTATCTTCTTTTACGATGCATGGAAATGGATTCCTGCGGATCACTATACCTTGCTCATCACCATCAAAAACTTATATTGTATGTTTCCAAATCAAGGCCATTAGATTAACTAGCTTACATCATTCATTTGATAATAAATATTGCAATGGTTTATTTATTTTAAGCAAGCTGTGGACCCAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA


gi|73924915|gb|DT508225.1|DT508225 WS02420.BR_G10 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02420_G10 

TTCCACAGCTTTCTTGAAC
.||| |||||||||||||
GAGGAGTCGAAAGAACTTT

EST sequence (targeted fragment marked with yellow):
TCTGAAGTTTCTCTCTCAACAAAGAACAAAACAAGGAAGCACCAAAACCAACAACTACAAGCAAGTACTACTACTACTACTAATTAATAACTGGAGCAGTGCTTGTCAATTGACACAGCACAGCCAAGCCAACCCAAACCCGTCTCTGTTACTACTTTCCTTGACCTGTAACTGGTGGGTGTTTCCTTTTCTCTTTCCTTTCTTTGGATCTGAAAAAGAATTCTCTAACTAGGGTTTGTCACAGGTTCCTCTCTAAATTTAGCAAAATGCCGCCTGTTTTACTCCACTCATGAGTGTCTTGGTTTTCTTTTATGCAGCACTAACCCAGTTCTTCTCTTTGTATGTTGGTTTATTCTCTGTAGCTATCCCTTTTCTTTTCCTGTTTTCTTAGCTTAAAATGGCAAGAGAGAGGATTCAGATAAAAAAGATCGATAACGCCACCGCTAGGCAAGTCACGTTTTCAAAACGAAGAAGAGGGCTTTTCAAGAAAGCTGAGGAGCTTTCAGTTCTCTGTGATGCTGATGTTGCTCTCATCATCTTCTCCTCCACTGGCAAGCTCTTTGAGTTCTCCAGCTCAAGCATGAAGGAAATACTGGAAAGGCATAATTTGCACTCGAAGAATCTTGAGAAGCTGGAGCAACCATCTCTTGAGTTGCAGCTGGTAGAAGACAGCACCTGCTCCAGGTTGAGTAAGGAAGTTGCGGAGAAAAGCCATCAGCTGAGGCAAATGAGAGGGGAAGATCTGCGAGGATTGGATATAGACGAATTGCTGCAGCTAGAGAAGTCTCTTGAGGCTG


gi|46839360|gb|CN520991.1|CN520991 GQ0107.B3_D06 GQ010 Populus trichocarpa x Populus deltoides cDNA clone GQ0107_D06 5', mRNA se 

TTCCACAGCTTTCTTGAAC
.|||| |||||.||||||
GAGGTTTCGAAGGAACTTC

EST sequence (targeted fragment marked with yellow):
CAAAAGCGAATTATGGAAATTACCCCCTCTCCATCTCCTCCTCCTTCAGGGAGATTCAAACTTTTTGACCAATTAGAATTGCAAGAATTCAGCGACAAATACGTGATCAAATCTGTTGAATCTCCTAATCGTGGCTTCTCCATCAGTCGCCTCCACGGCGATATCCAGCCTCTTAATAATGATAATGATGGTGGTGGTTGTGATGAAAGTTCCGTTAGTCCGTCAAAAACCTCCGTAATTTACGGCGTCGTCGGCACAATTAGATTGGTCGTAGGAACGTACATGCTTGTGATAATTTCGCGGAAAGAAGTTGGAGAATTTCTTGGTTTTCCTGTTTTCCGAATTGCTGCGATGAAGTTTTTGCCTTGCAATGAGGCATTGAAGTTTTCTACTGCGCAAGAAAAAAGAGATGAGGCCTACTTTATGAATCTGTTGAAAGTGGTGGAGTCAACTCCAGGGCTGTATTATTCGTATGAGACGGATATAACTTTGAATTTGCAGCGAAGATGTAAATTAGCAGAAGGGTGGATGAGTAAACCGATTTGGAAATCAGCTGACCCTCGATTTGTTTGGAACAAAAGTCTTTTGGAAGAACTAATTGAGTTTAAGCTTGATGAGTTCATCATTCCTCTACTTCAAGGAAGCTTTGGAGCTGCACGGCTAAAGATNNNNNAGTCATCTGCCACAGTTACATTAGTTTCAAGAAGGTGTACTCGGCGTCTAGGGACACGAATGTNNANNAGAGGAGCNNNNNNNNNNNNNNNNNCTGNNNNC