| mature miRNA: TTCCACAGCTTTCTTGAACT species: Mesembryanthemum crystallinum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|86169910|gb|DY030992.1|DY030992 mcr02-1ms1-f03 mcr02 Mesembryanthemum crystallinum cDNA clone mcr02-1ms1-f03 5', mRNA sequenc TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CCGGTTGGCTTTGTTGTTGTTGTTCTTCCTTGGTGTGGTGTTTTTCTTCTCAGCTTTTGCAGAAATTAATGATGATGAGGAAAAATCAGTTGGGCTTGTGATGAACTTTTACAAGGACAGTTGTCCTCAGGCTGAAGACATCATCAGAGAACAAGTCAAGCTCCTGTACAAGCGCCACAAGAACACTGCTTTCTCTTGGCTCAGGAACATCTTCCATGACTGTGCTGTTGAGTCATGTGATGCATCATTGCTGCTGGACTCAACAAGGAGGATGATGTCAGAGAAGGAAATGGACAGGAGTTTTGGACTGAGGAACTTCAAGTACCTTGAGAGCATTAAGGAAGCTGTGGAAAGAGAGTGCCCTGGTGTTGTCTCCTGTGCTGATATCCTTGTGTTATCTGCTAGAGATGGCATTGTTCAGGTTGGAGGACCTCACATTCCCCTGAAGACTGGAAGGAGGGATGGAAGGAGGAGCAGATCAGAACTATTGGAACAGTACTTGCCTGACCATAATGAAAGCATGAGTATGGTCCTTGACAGGTTCAAGGCCATTGGCATTGACACCAAGGGAGTGGTTGCTTTGCTAGGATCTCACAGTGTGGGCAGAACCCATTGTGTGAAGCTGGTCCACAGGTTGTACCC | |||||||||
gi|26561010|gb|CA833245.1|CA833245 MCS020A12_151768 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CGATCTCAGGATCGATTCAATGTTGATCAATGAGCGAGCTAGCTCCACAGGCAGGAACAATTACAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAAGCTGTGGGAAAATATGGCGTTTCCCAGGACTTGGACCGACTTATTTCCAATGACAGACCGTACACGGTTCATCTATTCCGTTTTGTGGTAAGTTTTTCCCCAATTATGTTCTCCTGGTAGTAATCAGGAAGATATATATATAAATCAGTATCATATGAGCAATATTTGATGAGCATGAATTATTGCATATCTGTAATCTTTGAGGAGTCATTAGAATTTAGTTGTTGATCTACAGTATCAGATTTGGGTAATTATTCCTTCTGCTGTTCCAATTCTTGAGATATTCTAGGGAATTTATTTGGGATCTGTTTGGATGGTAACTCACTGAAATTCAAGAAGATTTGAACACAAAAAAGAAGAAACTTTCAAAATGCTATCATTTTATTTATCTTTTTCTCTATTTACTTCTTCCTTGCTAATTTCAGAAAACAATTCCCATTCACTGCACCATTATTGCCCATGCAGTTGTAGAAAATACAAATTATATATNTTGCTAATATTTATTTTT | |||||||||
gi|8330421|gb|BE035412.1|BE035412 MO04H09 MO Mesembryanthemum crystallinum cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): TGTTCCTCAACTAAGTTACNTACTCNCAGCTCCTTGACCCCCGTCTGAACGCATTCGGTACGCGATCATAGCATTTAAGCCAAATCAAAGTAGCTACTCAGCAATAAACATCAACAGCAACCCAACCCAACCCATCCCAACATCTCCTCTTCCCTTCCATTCTCCCAAAATTCCCAAGACCAAACTTCCAATGGACAAAAGATCCCTAAACCACCTACCCAGATTGTAGCTCAATTTGGGTACTAAATTTCCCTCACCCCTTTACCTTGAAGAAATTGAACAACAAACCCTTGAGATTAAAGCAACCTTATTAGTACTACACTAAATTAGATGTACCACCAACCCAAATGGATATGACCACCACCACCACCACCACAACCACCATTCCCACCACCACCACCGCAACTAAAAGCCCAGAAACCGAGACCGAGACCCCGCCTCGGATCCAACCAACGAGGCCCATTTCCTTCTTCAACGGCGTCTTGAAACGGCACACGACCACAACCAACCCCCACATCACCACCTACACAGAATGTCTCATGAACCACGCCGCAAGCCTTGGCGGCCACGCGCTCGATGGTTGCGGTGAGTTCATGCCCGTCACTACCGNCACGGNCTCTGACCTCACCTGCCTCAAGTGCGCCGACTGTGGCTTGCATCGCAACTTCCATCGNCGTGACCCCGATGACCACCATCAGCACCACCACCACCTCTCTTCAGTCATCGAGTACCATCCCATCACCGCANCACCTGTTCAACGTCTTTCCGGCGTGCTTGGTGGAGCCCCGTCGTTCTCGTTCCCACTGCGATCTTTCTTCTACTACCGGCTCATGTCCACATGTTTCGATGAGCGCGCTTGATACACACTGAAGTCAATCCAGACACACACATCCCAGTGTGATTACTGCATTGGATATCTACGCTGACGTTAGGCCAGTTATCAGTCTTGGGAGATCCAGTTCGGTAAGCTGTGGAAGCGTGCTAATCCGTGTATGGTCATGCCCATGTCTGCCAGTGCAAGCTGTGCCTACAGATTCCCTAAGACCTTCTTCCCTAGTTGTCATGTGTTATACTCATCCCACTGGTCCTTTTTATTCTTCCCCTTATGTCCTCTTCTACGGTCCACTTGCTCTTCACTTCCTCCTTTTATACG | |||||||||
gi|26560248|gb|CA832483.1|CA832483 MCS001G10_150244 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): GCGCGCGATCTGGGCGTCTGGATTTCAGGGCGTCGTTTGTTTCTCAGGCGGCTGCCATGGCGGATTATTCTGATGAGGAGAAGACGAGAGCGGGTGGCGGTGCCGGTGCCGGTAACGAAGGGCTTGAAATCTCTAAGCTTAATATTCATCAGGATATTGTTAATTGTTTGGCTCAAAAAGGGATCACAAAGCTCTTCCCTATTCAGAGAGCTGTTTTGGAGCCTGCTATGCAGGGTCGTGACATGATTGGTCGTGCTAAGACAGGGACGGGGAAGACACTTGCTTTTGGGATACCCATCATGGATAAAATCACGCGCTTCAACGCGAAAAATGGGTGTGGAAGAAACCCTTTGGCATTGGTTTTGGCTCCAACCAGAGAACTTGCTCGGCAGGTTGAGAAGGAATTTTGTGAGTCTTCAAAATTGGAGACTCTATGTGTGTATGGGGGTACGCCAATCGGACGCCAAATTAGCATTCTTAACCACGGTGTCGATGTGGTCGCCGGAACACCTGGTCGTGTTATTGATCTGTTGAAGAGAGGAGCTTTAGATCTATCTGAAGTTCAGTTTGTTGTCCTGGATGAAGCTGACCAAATGCTTGCTGTGGGGTTTGAGGAAGCTGTTGAAGTTATATTAGAGAAGCTGCCACAAAATCGCCAAACTCTGATGTTCTCTGCCACCATGCCAAACTGGATTGTGAAGCTGACT | |||||||||
gi|18957834|gb|BM658323.1|BM658323 MCR058F10_70429 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment presc TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): GGGAATTCTTCCCTCAAATTCCCAAGATTAAGTATGAGGGGCCTAATACCAAGAATCATCTGGCTTTTAAATATTACAATGCTGAAGAGGAGGTCCTAGGGAGGAAAATGAAGGATTGGCTTAGATTCAGTGTAGCATTTTGGCACACATTCCGTGGAACAGGGGGTGACCCGTTTGGTGCACCCACCAAACATTGGCCATGGGAAGATGGCACCAATTCTGTGGCCATGGCCAAGAGAAGAATGAGAGCTAACTTTGAGTTCATCGATAAGCTCGGAGTTGAGTTCTGGTGCTTCCATGACAGGGATATTGCTCCAGATGGTAAAACTTTGGAGGAATCGAATAAAAACCTGGATGAAGTGGTAGCTCTAGCCAAGGAACTGCAGGGTTCAAAGATCCATGTATTGTGGGGTACAGCTCAATTGTTCCATCATCCTCGTTACATGCATGGTGGTGCTACGAGCCCGGAGTTGGGTGTATATGCATATGCTGCTGCACAGGTGAAGAAAGCTATGGAGGTTACACATTATCTTGGTGGTGAAAACTATGTTTTCTGGGGCGGTCGTGAGGGATATCAGACGCTGCTGAACACAGATATGGGAAGAGAGCTTGACCATTTGGCAAGGTTTCTTCAGGCTGCTGTGAACTATAAGAAGAAGATTGGGTTTAATGCAACTNTGCTTATTGAACCGAAGCCCCAAGAACCTACCAAGCATCAGTATG | |||||||||
gi|18023049|gb|BM300674.1|BM300674 MCA052E08_21718 Ice plant Lambda Uni-Zap XR expression library, 0 hours NaCl treatment prescr TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): ACTGAAGCTAAAGATGAAGATGAAGATGATAATAGAGGTACATTCACCGGGTCGACTCAGTTGACCGAGTCATCCTCCATTGAAGAAGCTGCAGCAGCAGCTCCTTCTTCTCCCTCTTCTTCCTCTGCTGCTGCTGGTGCGGCGGCCATTGATTCGAGTTTGGAGGTTGAGGATGAGAGGTCGAAGCCGGTTATTCTCGTCACAAATGGCGACGGAATCGAGTCGCCGGGGATTGTTTCTCTCGTTGATGCTCTTGTTCGTGATGGCCGTTTCGATGTTCACGTTTGTGCTCCTCAATTTGATAAATCTGCATCTGGACATTCGTTGACAGTTCGTGAGACAGTTGAGGTGTCTTCTGCTGAAATCAGTGGTGCCACCGCTTTTGAAGTTTCAGGTACACCAGCAGATTGTGTGTCGTTAGCTTTATCTCAGGCATTGTTTTCATGGGCAAAGCCTCTGTTGGTAATTAGTGGAATTAATAGGGGATCAAGCAGCGGTCAAAATATGCTCTACTCGGGTGCTATTGCTGGAGCTAGAGAGGCATTGATTTGTGGAGTGCCATCTCTTTGTCTATCACTGGAATGGAAAAAGGATGTAAGCTCTGAGAATGACTTCAAGGAAGCTGTTGACATTTGTCTTCCATTGATAAATGCAGCAATTAGAGATATTGAG | |||||||||
gi|26568255|gb|CA840490.1|CA840490 MCT038A05_174075 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): GCCCCATTTCTCTCCCCATTTCTCTCTCTCTCTCTCTCTCTCTCTAATCATCAAAAATGCGCACAACACTGTATCCATCTCTGTTCTTCTTCTTCTTCCTCAATTTCACCCACCTCTGCTTCTCATCATCTTCAACCTCCGACCTCTTTGAATCATGGTGCAAAGAACATGGAAAAACATACCCATCAGAGCAGGAAAGGCAGTACAGGCTCAAAGTGTTTGAAGACAATCTGGGTTTTGTTACCCACCATAATAGCTTGGGAAATTCGACTTATACCCTTGACCTTAACGCCTTTGCTGATTTGACCCACCATGAATTTAAATCATCTAAGCTTGGGCTTTCTTTATCTGCTAATGATTTGATCAGGTTAAAGAGGCCTGACCCGGTTTCCGACCCGGTTGGGGATGTTAATGTTCCTTCTTCGGTTGATTGGAGGAAGGAAGGTGCTGTCACTAATGTCAAAGATCAAGGAAGCTGTGGTGCCTGCTGGTCTTTCTCAGCCACGGGAGCTATTGAAGGTATCAACAAGATTGCTACAAGTTCTCTTGTCAGCCTTTCAGAGCAAGAGCTAATTGATTGTGATAGATCCTACAATGAAGGCTGTGATGGAGGGCTCATGGACTATGCATATAAGTTTGTGATAGATAACCATG | |||||||||
gi|26565131|gb|CA837366.1|CA837366 MCT004D11_164663 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): GATGGAGTAGAAAGAGCAAGAGCAGTGAGTGGTGAGAAGTTGCTGAGGAGCATTATGGCGGATAACAAGATCGAACTTTATGCCACGTATGGAAAAGTGATGAATTGTGGAGGTGGAGGAAGTTGTGGAACTTGTATTGTTGAGATTCTCGATGGGAAGGATCTTCTGAATGAAAGAACAAATACAGAACTCAAATATTTGAAGAAGAAACCTGAATCTTGGAGGCTTGCTTGCCAAACTATTGTTGGAAATAAAGAGAATTCTGGCAAGATTGTGGTTCAAAGGCTGCCTCAATGGAAGAAGAAATGATAAGCTAGTTCATGATCTAGCTAGCCATATATATTCTTTGTGATTTTTATAATTAAAAAGGTGAAAGTACCTTTGAAATTTGAATGTGTTTATCATGTCACATTAGCAACACTGCAACAGTAAGATAGCAGAGGTACACTGCTTACAGATTTGAATGGAAATTTTGATTTTCTGT | |||||||||
gi|18024526|gb|BM302151.1|BM302151 MCA047H12_23486 Ice plant Lambda Uni-Zap XR expression library, 0 hours NaCl treatment prescr TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): CTCTTTCTCTCTCTACTTTTTTTTTCTCTGTTTCTCTCTCTACCCCTAACTAGGGTTTAGCCCCTTCCTTAGGTCGGGCCAAATACCTAATAGATACACATACATACCCAATCAAATCAAAATCCAAATTATCAATACATATGGTCCTCTTTGTATTCTTCCTCAGCTTTCTTGAACTGCATCTTCCCTAATTTTTTTATCTTTTGTTTTTCCTCTCTCAGATCCAATTTTTTCTTTGGTAAATACTTATAATTTATCAAAAAAAAAAAAAGATGGATTTTTGGGAATTGAAAGATGGAAAATTTTAATTTGTGGGTTGCGGTTCAATAAAGCTGTGGGAAGATACAAATAGGCCCAACAAAAATTCAAGATCCGCCCTTTTTTTTTGCTGATCGATGATGGCTCTCTTCTTCTATTATGGTTCCTAAGTCCATCTTTTTTTCAATATATTTTTATCTTTTTGATCGCTATTTATTTAGATTTATCTTTTTTTTTTTCACGTCTTTTTATTTTTCTTACCTCATCTTTGTGGGTCTAACCCTAGTGTCCATAAGGGAAAGGGAA | |||||||||
gi|18022616|gb|BM300241.1|BM300241 MCR057H06_25010 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment presc TTCCACAGCTTTCTTGAACT EST sequence (targeted fragment marked with yellow): ATGAAGCTGACCAAATGCTTGCTGTGGGGTTTGAGGAAGCTGTTGAAGTTATATTAGAGAAGCTGCCACAAAATCGCCAAACTCTGATGTTCTCTGCCACCATGCCAAACTGGATTGTGAAGCTGACTCGGAAGTACCTGAAAAACCCAGTGACAATTGATCTTGTTGGGGATTCGGATCAGAAGCTCGCAGAAGGGATCTCACTATACGCAGTTGCGGTGGAACATCGTTCAAAAGCAGGAGTTATTGGACCTCTTGTTACTGAACATGCAAATGGTGGAAAATGCATTGTCTTCACCCAAACTAAACGCGATGCTGATAATTTGTCTTATGCATTGGGAAGAAAAAACTACAGATGTGAGCCATTACACGGGGATATCTCTCAAGCTCAAAGGGAAAGGACACTTCAACGGTTTAGAAATGGGGATATCAACTTGTTGGTTGCCACTGATGTGGCTGCCCGTGGCCTTGACATACCAAATGTTGACCTGGTGATACATTATGAACTGCCTACCACATCCGAGATTTTTGTTCATCGATCGGGTCGAACAGGGCGTGCTGGGAAAAAAGGAAGTGCAATCCTCATCCACTCAATGGATGAATCAAGGTCTGTCAGAGTTATTGAGCGTGATGTCGGATCCAGATTCAGAGAGCTTCCTCCAGTTGCCTCGGATGGCGCAGAGCTGGATATGTCTCGTGGCATGG | |||||||||