| mature miRNA: TTCCACAGCTTTCTTGAACTA species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|211864521|gb|CO485291.2|CO485291 GQ0204.B3_A08 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0204_A08 5 TTCCACAGCTTTCTTGAACTA EST sequence (targeted fragment marked with yellow): AGTAATTGCGCCGTTTGATTATTCCTTGCTATTGTCTGTCCCATTCGAATCGGGATTTCCATCCAAAACCAAATCTGAAAATTCTGGATTAGTTTCCATTCAAACCGAAGCTTACTGATTCTGGTTTCGATTTGTGATCAAACCCGCAGTATGACATCTGGGAAAAACGGCCTCTTGCCACCTTCCTTTGTTTCTAATTTGCAAAATGTCTTGAAAAACAGAAAGTTAGAAAAACCCCCAGAAGAAGAAGAACAAAAACACCAAGAAGAAGAAGCTAAGATCGAGGTTCCTGCCGAACAGAAGACGTGCATTGAGGATTTAGAGAGGAATGAGGATTTAAGGCCCATTGTTCTTGTGACCAACGAGGATGGAATAGAAGCTCCGGGGCTCAAATGCCTTGTTGAAGCTCTTGTCAATGGAGGTCGCTTTAATGTTCATGTCTGCGCTCCCGAATCAGATAAATCTGGAAGCGGGCATTGCGTGTCGGTTCGTCAGACTCTGGTCGCAAGTTCTGTTGGTATCAAAGGGGCTACAGCTTATGAGGTTTCTGGTACCCCGGCGGATTGTGTCTCATTAGGTTTATCTGGAGCACTCTTTCCTTGGAAGAAGCCTTCTTTGGTAATTAGTGGAATCAACAAGGGATCAAATTGCGGATATCACATCATTTATTCTGGCGCTGTTGCAGGTGCAAGGGAAGCTCTCATGTCAGGGGTTCCCTCTATTGCAATATCTTTGAATTGGAAGAAAGCTGAGAGCAGCGATAGTGATTTCAAGGAAGCAGTGGAAGTATGTCTGCCTTTAATATATGCTGCAGTACAAGATACTGAAAAGGATCTGTTTCCCAAGGTTGTCTACTAAAGGTTGATATTCCNACACGCCCATCTGCAAATAAGGGATTTAAGCTTACTGGGCAAAGCACGTTGCGCTTGACTTCAAAT | |||||||||
gi|211885455|gb|CO479691.2|CO479691 GQ0187.T24_E09 GQ018: Clean ROOTS systems - N treatments Picea glauca cDNA clone GQ0187_E09 TTCCACAGCTTTCTTGAACTA EST sequence (targeted fragment marked with yellow): CTCAGTCCTGCAGAATATTTACAGTGGAGGAAAAGATGGAAAGTTAATCATTGTTAAGGAGACCTCCAGGGAGTCTGTCTCGATGAAAATGATTCATGAAAGCTGTGGGAGCTCGTCAGCAGCTTCAATATGACTTTTTCTGTGCACTATTTTTCCTTTTAATGTTGTTTTCTTCGGCCAGAGGATCCCTAGTAAAGGAGGTTTTCATTGAAGTGATATACATGAATGCTACAGTTTATAATGGTCCAAGAAGAAAAAATTGCTTGCAACATCAACTTCACGCAGCTGCCAAAATAGGAGCGATTTGACAGTATTGCTTCGTTTCAAGTTCAGGTATCACATGTGTTTCGTTCCTGCTCTGCTTCTTCCTGTCGTCTATTGCCTCTAAATGTGTAACCAGATTTCTTGTTCCAGCACAAGAAAGATAAATAACATTGATTTGTTGTTAGCACAACATCTTCTTTTTTCTATTCTTGAAGCATTTATATATGAAACTTGCTGTTTTACTTAACAGAGTTAAGGCTTCCTTTGAAGACACACTTTCCTTTTCACAAAGACCTTATCTTTGCAGAAGCAAACCAAGTTATCATCCCATTTCAATGAGGAATATCGTGAACAGGGATTTTAATCATGGTGTTAGATGAGTATTCTAGTTATAATTACG | |||||||||
gi|270050653|gb|GT739649.1|GT739649 GQ04013.B7P5_K14 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ04 TTCCACAGCTTTCTTGAACTA EST sequence (targeted fragment marked with yellow): GATCCTCCTCAGTTCTGCACGATATTTACAATGGAGGAAAAGATGGAAAGTTCATTATTGTTAAGGAGACCTCCAGTGAGTCTGTCTCAATGAAAATGATTCATGAAAGTTGTGGGAGCTCGTCAACAGCTTCAATATGACTTTTTCTGTGCACTATTTTTCCTTTTAATGCTATTTTCTTCGACCAGAGGATCCCTAGTAAAGGAGGTTTACATTGAAGTGATATACATGAATGCTACAGTTTACAACGGTTCTCTGGCTGCCTTGGCACAAGAACAGTCCCAAAAAAGTGCTTGCAGCATCAACGTCACGCAGGTGCCGAAATAGGAGCCATTTGACAGTATTGCTTCATTTCAAAAGTCCAAGTGTCAGATGAGTTTCCATCCAGCTCTGCTACTCTCTGTCACTTATTGCCGCTAAGTGTATAACCATATGTCTTGTTCGAGCCCAAAAAGGATTAATAACATTGATTCGTTGCTAGCACAATATCTCCTTTTCTCTATCCTTGAAGCATTTATATAGGCAACTTGTTCTTTTACTTAACAGAGTTAAGACTGCCTTTGAAGACACACTTGCCTTTTCATAAATACCTTATCTTTGCAGAAGCAAACCAAGTTATCAACTCATTTCAATGAGGAATATTGTGAACAGGGATTTTAATCATGGTGTTAGATGAGTATTCTTGTTATAATTTACAATGCCTGCTTCACTTTTTTGATGTGGCAGATGATTCTCAGTTGTTAAAAA | |||||||||
gi|211895230|gb|CO484043.2|CO484043 GQ0204.TB_A08 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ0204_A08 3 TTCCACAGCTTTCTTGAACTA EST sequence (targeted fragment marked with yellow): GGAGCACTCTTTCCTTGGAAAGAAGCCTTCTTTGGTAATTAGTGGAATCAACAAGGGATCAAATTGCGGATATCACATCATTTATTCTGGCGCTGTTGCAGGTGCAAGAGAAGCTCTCATGTCAGGGGTTCCCTCTATTGCAATATCTTTGAATTGGAAGAAAGCTGAGAGCAGCGATAGTGATTTCAAGGAAGCAGTGGAAGTATGTCTGCCTNTAATATATGCTGCAGTACAAGATACTGAAAAGGATCTGTTTCCCAAAGGTTGTCTACTAAAGGTTGATATTCCAACACGCCCATCTGCAAATAAGGGATTTAAGCTTACTGGGCAAAGCACGTTGCGCTTGACTTCAAATTGGCAACCTGTGACTCTACATCGGCATTTGGCAGGGCAGTATATGTCCAAGGAACAAAGCCTTGGTATCCAGCTAGCACAACTGAGCCAAGCTGCTTCTGCCGCAGGTGCAGCTCGTCGTCTTAATTTACGAAGGAAGAATATAGAGGTGGAATCAGTCGGAGAAGCAGGAAAGCAAGAAACACAAAGTGTGGCAGTCAAAAAGTACTTCCGTGTTGAGTTTTCTGAGCATGAACATGGAGAAATGGATGACGATCTTGACTATGGAGCACTTGAACAAGGATTTGTAACCATTACACCTCTAGGACTGACGTGTAATGCTCAATTGGATGCATGCACTTCTGTGGCCACTTGGATTACTACTGCAATTGATCAGGATGCACCAGCATCTCTCTGATAAAGATATGAAACATGGTTATTTATTGCCTGTCATTATTGACCCAAGTTTGGTGTAGATATTCTGCATATATTTGAGTGTAATCTACTTACTACTATATTTTAGACACCTAAAATGGAAACATGGAACCATGTAAAATCTGCAGGATACCCTGCAATATAAGTAGAGATCCCTGTAAATAGTTTTTTTCTCTGCTGCAAAAATTCAGCCAGGTATG | |||||||||
gi|292517854|gb|GW735342.1|GW735342 WS04910.CR_G19 WS-CBM-34 Picea glauca cDNA clone WS04910_G19 3', mRNA sequence TTCCACAGCTTTCTTGAACTA EST sequence (targeted fragment marked with yellow): GGGGAGAAATCTGCTGTCGAGAAGAAAGGTGCGGCAACGAGGAGAAGGAAGTGACCATCGAAAGGACGAAACCGCTGAGAAAAGAGAGAATCGAGCTGTGTGGAGAAAAATCCTGACACAGAATAAATACACAGCCACATATGCAAAATGTGGAGGAGGTCTGCGTGATGTTGAGGAGAAGCCTGGAGAAATTTTTCGTGGGCGATTTTTCAAAAATTATGAGGAAGAAGGGGCACCCATTTATTGTCTCTACCACTGTTGAGGAAGAAGGGGCGCCCACTTATTGTCTCTACCGCTGGTGAGAACCCTGGAGCGATTTTCATGGGCGATTTTTCAAGAAAGCTGAGGAAGAAGGGGCACTACAGTTCGACGCTACCCTAATTATAAAGACCGTAAGCAATGGAGAAATGTGCGGTCGACTTTACAGAGGAGAAAAATTAATGTTGAGGCTGTGTGAAGGAGCTGGGAAGGAATAAATTCCAAGAAGAGTTGTAAAGATCACTGATCCTCCTTTACTATATATAATCTCTCGTCAATTTTGTTGAAAGTTTTTTTTAGGGCTTGATTTAAAAAAAAAAAAAAAA | |||||||||
gi|238892089|gb|GR223502.1|GR223502 GQ0178.T3.r_N06 GQ017: Immature somatic EMBRYOS Picea glauca cDNA clone GQ0178_N06 5', mRNA TTCCACAGCTTTCTTGAACTA EST sequence (targeted fragment marked with yellow): CTCGATTGCTCGGGAGGAGAACGCTTCCGAAGTTCGGTGTTGGTTTTTGTCGCTTGATTTTAGGGTTTTCCACCCTTTTAATCTTGTTGTAGGCCCTAGATTGTTCGGGAGGAGAACGCTTCGAAAGTTCGGTGTTGGAATTTGTCGCTTGATTTTAGGGTTCTCCACAAACCTGATTTTCCAGCCTTTTAATCTTGGTGTAGGCCTTCGGATTTGTTGGAAAAAATTTCCTTTCCCTTTGTATGCTAATCGAGAGAGATCTTGCCTGTTGTTGTAATCTCAGATTGGAATGACATGGCCCGAGAGAAAATAGAGATGAAGAGAATAGCTAACGCTTCGGCGAGGCAGATGACGTTCTCGAAGAGGCGGAGGGGGTTGTTCAAAAAAGCTGAGGAGCTATCGATTCTATGTGCAGCAGATGTAGCCCTCGTCGTTTTTTCTTCCACTGGGAAGCTGTACAACTACTCGAGCTCCAGTATGGAGGTGATATTGGACAAGTACGTTTTGTATCCGAGCACAATTCAAAAGGATGGACAACAAATTCTCGAGTTCGAGAGTCAAGATCCCAAAAGGATAAAACAACAATTTGAAGATGCTAGTCAAGATTTGAGGGAGGAACTTGAAGGATTAACTTTAAAAGATTTAGAAAAACTAGAAGAACAATTTGAAATGGAGTTGAGTTGTATTCGATCACAAAAGGTGGAACATCTTTCTAAGAAGATAAATGAGCTTCAACAAAAGGTAATACAAATGATAGAGGAGAATACAAAACTCCGTGGACAGCTAAATGAAGGAGATGGCAGTCTTGTGGAAAATAATGATGGATGCTAATCTTTCTTCATTCAGTCATTGGAAAATCAGACCCCCCGTCATCTGAATCTATAACTACTTATTCCTATCAAAGACTGATGATTATGTTACTTCCTTGCAGCTAG | |||||||||
gi|238891618|gb|GR223110.1|GR223110 GQ03806.SP6.r_I20 GQ038 - Stem - Active growth Picea glauca cDNA clone GQ03806_I20 3', mRNA TTCCACAGCTTTCTTGAACTA EST sequence (targeted fragment marked with yellow): AGAGGCGGAGGGGGTTGTTCAAAAAAGCTGAGGAGCTATCGATTCTATGTGCAGCAGATGTAGCCCTCGTCGTTTTTTCTTCCACTGGGAAGCTGTACAACTACTCGAGCTCCAGTATGGAGGTGATATTGGACAAGTACGTTTTGTATCCGAGCACAATTCAAAAGGATGGACAACAAATTCTCGAGTTCGAGAGTCAAGATCCCAAAAGGATAAAACAACAATTTGAAGATGCCAGTCAAGATTTGAGGGAGGAACTTGAAGGATTAACTTTAAAAGATTTAGAAAAACTAGAAGAACAATTTGAAATGGAGTTGAGTTGTATTCGATCACAAAAGGTGGAACATCTTTCTAAGAAGATAAATGAGCTTCAACAAAAGGTAATACAAATGATAGAGGAGAATACAAAACTCCGTGGACAGCTAAATGAAGGAGATGGCAGTCTTGTGGAAAATAATGATGGATGCTAATCTTTCTTCATTCAGTCATTGGAAAATCAGACCCCCCGTCATCTGAATCTATAACTACTTATTCCTATCAAAGACTGATGATTATGTTACTTCCTTGCAGCTAGGGTATGCAATTATACTTATCAAATTCTGTTTTTATTTATTTTTAATTGGTGTTATCTTAACATTTTATGTTATGGTATTTTTTTGTTTAAATTTGATTATATAAATTTGGACGAAATTTTATTTTTGTTGTTGTTTAAATTGCATTTGAATGTATAAATGGATTTAGTTCAGCTTATTAAAAAA | |||||||||