| mature miRNA: TTCCACAGCTTTCTTGAACTG species: Lactuca sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|90503424|gb|DY965282.1|DY965282 CLSM16527.b1_M03.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM16527, mRNA sequen TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): ATCTGCTTATCGAGAGAGGCACCAGCAATGGCTTCTTTGATCCACAAGCACTTCTTTCCTCTTTGCAAATCCAAGTCCAATTTTTACCCAGACGCCCCATTTCCTCAATCGTCCTGCACTTGCTTTTTCGCTTGGTCTCAAGAAGCCCTCCTTCTCCTCCTTCCCATGTAGCCCAATCGTATGTAAGGCTGTTTCTGTGAAACCACAAGAGACTCAAGTCGAAGGTCTTAACGTCGCAGACGATGTTACTCAGCTTATTGGAAAGACTCCAATGGTGTACTTGAATGACATTGCAAAGGGATCAGTTGCTAATATTGCTGCCAAGCTTGAAATTATGGAGCCATGCTGTAGTGTGAAAGACAGGATAGGAAACAGTATGATAGCAGATGCTGAAGAAAAAGGACTTATAACACCAGGGAAGAGTATATTGGTTGAGCCTACAAGTGGGAACACAGGCATTGGGCTTGCATTTATAGCTGCTTCAAAAGGGTATAAGCTGATCTTGACAATGCCTGCATCAATGAGTCTGGAGAGAAGGGTTCTTCTAAAAGCATTTGGAGCGGATCTTGTTCTCACAGACTCCTCAAAGGGCATGAAAGGAGCAGTTCAGAAAGCTGAGGAAATAGTCAACAGCACACCCAATTCTTACATGCTTCAACAATTTGATAATCCTGCTAATCCAAAGGTACACTTTGAGACAACTGGCCCAGAAATCTGGGAAGACACCAAAGGGAAAGTGGATATATTTGTTGCAGGGATTGGAACTGGTGGAACTATATCTGGGGTTGGCCGCTTTCTCAAAAATCAAATCCTGATGTTA | |||||||||
gi|22251736|gb|BQ866271.1|BQ866271 QGC7I05.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC7I05, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): AGGTCTTATGTGGCACTAGGGAAGATATTAGGCAAGCAATCAAAATCAACCGAAGCAAGAACAGTCTATGAGAAAGGTTGTCAAGCAACACAAGGCGAAAACGCCTACATTTGGCAGTGTTGGGCTGTTCTTGAAAACAAAATGGGAAACATAAGAAAAGCTAGACAGCTATTCGATGCTGCAACAGTAGCTGATAAGAAACACGTTGCAGCATGGCATGGATGGGCAGTTTTGGAATTAAAAGTTGGAAATGTGAAAAAAGCTAGATATCTTCTTAGTAAAGGACTCAAGAATTGTGGTGGAAATGAGTACATTTATCAAACACTTGCAATGCTTGAAGCCAAGTCAAACCGGTTTGACCAAGCTCGATACTTGTTCAGACAGGCCACTAAATGTAACCCCAAAAGTTGCGCCAGCTGGCTCGCATGGGCTCAGCTTGAGGTACAACAGGAAAATTACCGTGTTGCCAGACAGCTTTTTGAGAAAGCTGTGGAAGCTAGTCCAAAGAACAGATTTGCATGGCATGTATGGGGAGTTTTTGAAGCAAATGTTGGGAATATTGATCAAGGAAGAAATTACTAAAAATTGGTCATGCATTGAATCCAAGAGACCCTGTTTTACTTCAATCACTTGGGTTGTTGGGATACAAACATTCAGCTGCAAATCTTGCTAGAGCTTTATTCAGAAGAGCATCAGAATT | |||||||||
gi|90505400|gb|DY967258.1|DY967258 CLSM18379.b1_F12.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM18379, mRNA sequen TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCTCGGCGGGAGTATAGGTAGTGGTCGACAACCTCATTTCCTCCGACAGCACTGGTGTCAGTGTCACCGTCGAGGCGCATTCTCAGGCAATTTCCAACTTCTGAATAACACACACAAGTCTCGTTGCTTCGAAATTTGTTGAAGAACTGTTGGATACAAGATGAAGAAAAAATTGACACCGGAAGAAGGCTTAAGTATATTGAATGAAGGAATTTCAAAGGCCTTTATGATACTGGATGGGTACCCCACCAGTGCATTATTTACTTGTGAAGAATACATGAAACTCTACGACTGTGTGTATGATATGTGTGTTCAACATCCTCCTTATGAATACTGTGCAAAGCTCTATGACATATTCAAGAAAGCTTTGGAAGATGGCATTACTTCAAGGGTGATCCCAGCTGTGAAAGATAAATCACATATCTTTCTGTTATACGAGCTTTGGAACATGTGGTCAAAATACAAAATCATGGCAAAATGTCTTGGAGGTTTCTTCTTGTACCTTGATCGATACTTTGTTGAAGATCGAAAAGCAGCTTCTCTTAGTAATCTCTCCATTTCTTGCTTCCATGATCTGGTGTGCATTGAATTGTATCCCAAGTTATTAGAAGCTGCAATTTGTCTAATCAATGAGGATCGTGATGGTAAATCGGTTTGCAGGGATTTGCTAAAACATGTTTCAACTTTTTTTGTGGAAATTGGGAGGGGGGATATGTGCTATTATGAGAACTTTGAGGGAGCAGTACTATCAAGTACTGAAAATTACTACAACTTCTTGGTTCCACAGTGGCTTCAGCATTACTCATCTGCTGATTATGTTTTGAAGGCTGAATATCGTTTGAGCCAAGAAAAGAAAGAGCTAGCCAATTCTTACATC | |||||||||
gi|90511676|gb|DY973534.1|DY973534 CLSM7227.b1_F08.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM7227, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): ACCCACTTCTAACTCATACATACAACCCTATACACACACTCCACACAGTGCTTGTGTTATCACGAACCCTAATTTGGGTTTCAATTGTGAAGAAGAAGAAGAAGAAACTTGAATGAATGGTGCTCTTTCTGTTCTTCCACAGCTTTCTTGAACTGCATGGTTCAACATTGATCTATTCGAATCTTTGCTGTTCAATAAAGCTGTGGGAAGATAGAGAGAGGATCAACCCAGAAAATTAAACACCGAGAAAGTAATCCTAGATCTACCCTTTATGGTATATATGTATATATATCTAATATCTACCTTTCTTGTTCTTCATGTTCTTGGACTTCTAAATTTATTAACTAAATGTTATTTACTGATAATTATATGCATTTGATCACTAGTGTTGCATCTGTTATTTTGGTTCTTGATTAAAAACATTAAAGCCCTGTTATTTTTTAACATTTGATTCATTTGAAACTCAATCGTTGTGAGATCTATATGTATATGTGTGTGATTGCCAACATTACATGAGATTTTCTTATTTAGTTTTTTAACACACACACACACACACGTACACACGTACTTATTTATTTCCTTGAATATAATTGGTTGAAGACGTGGTTAACATTCTAGTAGTTAAACTTTTCACTAATTTGATGTAATTTAACAATATTTAGACTTTGAATTCTATACAATCAGATTTATGGTTTTTAAGCCTCACAAATGGCTCAAGAAAATCTCTTTGGATTAGATAGCATGAAACCTCAGAGTATTCCAAAACGCTATAAGGATTTTGTTACCTTTCATGTCATCGCCACACAATTTGATAGCATGGAAAGGGTATCATTTTGT | |||||||||
gi|90505442|gb|DY967300.1|DY967300 CLSM18418.b1_D22.ab1 CLS(LMS) lettuce sativa Lactuca sativa cDNA clone CLSM18418, mRNA sequen TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CACAAAAACTCCTAGGCTTCATCTGTCACTCTCCGACCACCGCAGCATTCGACAACCGACTCATCATCCGTCCATCTCGCCGTAAATTCCGATCAAAAATCCATCTGTTTCTCCGAATTTCAGGTTCAAACACAATCACAAACACGCGCTGCATCTGTGTGATACAAAATTTCAGATCTGCTTATCGATCAGATACTTAGTAGTTTGGAAACGCCATGATTTGGCGACACTGGATACATCTTCTGGTGCAACTGTAACAACTAACAAGTAACAACCTTCTGAAGTGTTAAAGATCCTTATGATGTTCAGATCCAAAATCAAATAGGTGGCACTTGGGGGCCTGGTTTTGTCATTTTTGTCTTTGTTAGTGCACATGTTTCTTGCAAATACAAGTGTGGAGTTAGTACAATACAGTGTGATGACACGATTTATTGAGGATCTGAATATAGATGTTGTGGGGAAACAGAGTGTCAGATCTAAAAAGTTGTGGAAAAAGGTCAAGTCTTTAGAGGTTTTGCAGCCATATGCAAACCCTAGAAGTAAATATCCTGTTCCAGTTGAACAAAGTAATGGCTTCATATATGCTAAAATTTTTGGTGAATTTGAGAAAATCAGATCTTCGATTTGTGATCTTGTTGCCATATCCAGGCTTCTCAATGCTACTCTGGTCATCCCAGAGATTCAAGAAAGTACAAGTTCAAAAGGCATCAGTTCTGAGTTTAAAAGCTTTTCATACCTCTACAACGAAGAACAATTCATAACCTCTCTTAATAATGATGTAATCATTGTGAAAAATCTGCCTACTAAGCTTAAGGAGGCAAGAAAACGCANAGAATTTCCTACTTTNCAGCCCAAAAAATCAGCTTCTCCCTGATATTACATTAAAGAACTGTTGCC | |||||||||
gi|83978971|gb|DW125080.1|DW125080 CLSX1565.b1_I07.ab1 CLS(XYZ) lettuce sativa Lactuca sativa cDNA clone CLSX1565, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): GCTCTAGAACAGAGAACTTCCATCTGTATCCTCCTCTTCGGTCTCAGGAAATGGCAATGGCGGCATACCTTTCTAGAATCGCTAGGCTCTCTGCCTCCCATCAAAACCCAGTACGAACCTTCTCCTCATCCATAACCCCTTTTTCATCATTTCGCGCTTTGAAATCTGCTATCAAAACAGAAGAAGACCCACTTAAGATCGCCAAACTCTTCGAATTATCCATTTCGATACCCACATTTAGACGCTTTCGACCTCTCTTTACCCTATCCGTTCACAAGCTCTCTCGATCCAAACGCTTCGACCTTATCGACCGCATACTCACCAACTCCATCACCAGTTCCCCTCCTCCTCAGCTTGCTTCCGAAGGCTACTGGCTCCGGATCGCGATGTTATACTCCCAGGTAGGAATGGTTGACAATGCACTCCAACTGTTCGACAAAATGCTTCAACAACAGAACTGCACCCTCACTGAAAAATCACTTTGTGGGATTCTGTCTGTGATGATAGATAACAAAATTTACGATGATAAATTGCAACAGACGTTCGAGGCTTTTGTAACCAAAACAGGTATTTCCCCTGGTGTAAAATCCTATAATTTGATTTTAAAAGCCCATTGTAAAGGAGGTCATGTGGATGAGGCTCAGGCATTGATTGAGAAGATGGAAACCGAAAACAATGTGCATCCAAACATTGATTCCTACAACATATTGCTGGGAGGTTACTTGGATAGCAAGAAAAAGAGTGCGTTTGATATGGTGGTGAAACAGATCAACGAGAAAGGTTTGGAACATAACTTGACCACTTACAATCACAGAATCTTGAGGTATTGCAAGAACAAAGAGTGTGTNTAGGGCAAGAAAGCTGTGGATGAAATGATATCAAAAGGAGTTGAACCCCTATTCTGTAGCTA | |||||||||
gi|22236348|gb|BQ850879.1|BQ850879 QGB13N01.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB13N01, mRNA sequence TTCCACAGCTTTCTTGAACTG EST sequence (targeted fragment marked with yellow): CATGACGCAAAGACAGCACTAACAGGTGCAGAAGTAGGACCACTTTTATCCAGTTCAGAGAAGGTGTGGAAAACATTTCAAGCTGTTGGAGACATTGCTTTCGCTTATGCCTACTCAACTGTTCTTATCGAAATTCAGGACACATTGAAATCATATCCACCGGAAAACAAGATGATGAAAAGAGCATCGCTAATTGGTGTCTCGACGACCACTTTGTTTTACATGCTTTGTGGCTTAATCGGTTATGCAGCATTTGGAAACGATGCGCCAGGCAACTTCTTAACTGGCTTTGGATTTTATGAACCCTTTTGGCTTATCGACTTTGCTAATATATGCATTGCCATCCATCTTATTGGCGCATATCAGGTATTTTGTCAACCAATATTCGGGTTTGTTGAGAAGAAATGTCGGGAAAAGTGGCCGGAAGGCAAGTTCATAATGACGGATCATACTATTAATGTGCCATTTTGCGGAGAGTACTACTTCAACATGTTTAGATTGGTGTGGAGGACAACGTATGTGACGATAACTACACTAATTGCAATGATTTTTCCCTTTCTTCAATAGCTTCTTAGGGGTGATCGGGGCCGGGTCATTTTACCCTTTGGACAGTTTAT | |||||||||