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mature miRNA: TTCCACAGCTTTCTTGAACTG
species: Sorghum bicolor
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|7659475|gb|AW745737.1|AW745737 WS1_37_C05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence

TTCCACAGCTTTCTTGAACTG
|||||||||||.||| || ||
AAGGTGTCGAAGGAAGTTTAC

EST sequence (targeted fragment marked with yellow):
GCACGAGGGTCATCTACAGTGACTTGACAAGGGAAAGCAAAAGAAAGCTTATGCAACTGATGCAACAATGGTCTGAGTGGCAGGCCAGAAGGCAGCACCATTTGAAGGAAGCTGTGGAAGGGACCTTAGAAAGTGGTGAAGAGACTTATTATCCAGCATTACATGTTGGTTCAGAGAAATCTTGTGCTGTGTCATTTTGGGTGGATAACCAAGCAAGGGAAAGTGACATCCACGACGTGGTGTCGTCGTCGTCGTCGCCGGGCGGCAACTGGAAGGTCTACTTCTACGTGTCCCCCTACGCGCGCACCCGCGCCACGCTCCGCGAGATCGGCCGCGCCTTCCCTCGGGACCGCGTCATCGGCGCCCGCGAGGAGTGCCGCGTCCGCGAGCAGGACTTCGGCAACTTCCAGGTCGAGGAGCGCATGCGCGCCGTCAAGGAGACTCGCCAGCGCTTCGGCCGCTTCTTCTTCCGCT