| mature miRNA: TTCCACAGCTTTCTTGAACTT species: Mesembryanthemum crystallinum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|26560248|gb|CA832483.1|CA832483 MCS001G10_150244 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GCGCGCGATCTGGGCGTCTGGATTTCAGGGCGTCGTTTGTTTCTCAGGCGGCTGCCATGGCGGATTATTCTGATGAGGAGAAGACGAGAGCGGGTGGCGGTGCCGGTGCCGGTAACGAAGGGCTTGAAATCTCTAAGCTTAATATTCATCAGGATATTGTTAATTGTTTGGCTCAAAAAGGGATCACAAAGCTCTTCCCTATTCAGAGAGCTGTTTTGGAGCCTGCTATGCAGGGTCGTGACATGATTGGTCGTGCTAAGACAGGGACGGGGAAGACACTTGCTTTTGGGATACCCATCATGGATAAAATCACGCGCTTCAACGCGAAAAATGGGTGTGGAAGAAACCCTTTGGCATTGGTTTTGGCTCCAACCAGAGAACTTGCTCGGCAGGTTGAGAAGGAATTTTGTGAGTCTTCAAAATTGGAGACTCTATGTGTGTATGGGGGTACGCCAATCGGACGCCAAATTAGCATTCTTAACCACGGTGTCGATGTGGTCGCCGGAACACCTGGTCGTGTTATTGATCTGTTGAAGAGAGGAGCTTTAGATCTATCTGAAGTTCAGTTTGTTGTCCTGGATGAAGCTGACCAAATGCTTGCTGTGGGGTTTGAGGAAGCTGTTGAAGTTATATTAGAGAAGCTGCCACAAAATCGCCAAACTCTGATGTTCTCTGCCACCATGCCAAACTGGATTGTGAAGCTGACT | |||||||||
gi|86169910|gb|DY030992.1|DY030992 mcr02-1ms1-f03 mcr02 Mesembryanthemum crystallinum cDNA clone mcr02-1ms1-f03 5', mRNA sequenc TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): CCGGTTGGCTTTGTTGTTGTTGTTCTTCCTTGGTGTGGTGTTTTTCTTCTCAGCTTTTGCAGAAATTAATGATGATGAGGAAAAATCAGTTGGGCTTGTGATGAACTTTTACAAGGACAGTTGTCCTCAGGCTGAAGACATCATCAGAGAACAAGTCAAGCTCCTGTACAAGCGCCACAAGAACACTGCTTTCTCTTGGCTCAGGAACATCTTCCATGACTGTGCTGTTGAGTCATGTGATGCATCATTGCTGCTGGACTCAACAAGGAGGATGATGTCAGAGAAGGAAATGGACAGGAGTTTTGGACTGAGGAACTTCAAGTACCTTGAGAGCATTAAGGAAGCTGTGGAAAGAGAGTGCCCTGGTGTTGTCTCCTGTGCTGATATCCTTGTGTTATCTGCTAGAGATGGCATTGTTCAGGTTGGAGGACCTCACATTCCCCTGAAGACTGGAAGGAGGGATGGAAGGAGGAGCAGATCAGAACTATTGGAACAGTACTTGCCTGACCATAATGAAAGCATGAGTATGGTCCTTGACAGGTTCAAGGCCATTGGCATTGACACCAAGGGAGTGGTTGCTTTGCTAGGATCTCACAGTGTGGGCAGAACCCATTGTGTGAAGCTGGTCCACAGGTTGTACCC | |||||||||
gi|26568255|gb|CA840490.1|CA840490 MCT038A05_174075 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GCCCCATTTCTCTCCCCATTTCTCTCTCTCTCTCTCTCTCTCTCTAATCATCAAAAATGCGCACAACACTGTATCCATCTCTGTTCTTCTTCTTCTTCCTCAATTTCACCCACCTCTGCTTCTCATCATCTTCAACCTCCGACCTCTTTGAATCATGGTGCAAAGAACATGGAAAAACATACCCATCAGAGCAGGAAAGGCAGTACAGGCTCAAAGTGTTTGAAGACAATCTGGGTTTTGTTACCCACCATAATAGCTTGGGAAATTCGACTTATACCCTTGACCTTAACGCCTTTGCTGATTTGACCCACCATGAATTTAAATCATCTAAGCTTGGGCTTTCTTTATCTGCTAATGATTTGATCAGGTTAAAGAGGCCTGACCCGGTTTCCGACCCGGTTGGGGATGTTAATGTTCCTTCTTCGGTTGATTGGAGGAAGGAAGGTGCTGTCACTAATGTCAAAGATCAAGGAAGCTGTGGTGCCTGCTGGTCTTTCTCAGCCACGGGAGCTATTGAAGGTATCAACAAGATTGCTACAAGTTCTCTTGTCAGCCTTTCAGAGCAAGAGCTAATTGATTGTGATAGATCCTACAATGAAGGCTGTGATGGAGGGCTCATGGACTATGCATATAAGTTTGTGATAGATAACCATG | |||||||||
gi|18022616|gb|BM300241.1|BM300241 MCR057H06_25010 Ice plant Lambda Uni-Zap XR expression library, 48 hours NaCl treatment presc TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): ATGAAGCTGACCAAATGCTTGCTGTGGGGTTTGAGGAAGCTGTTGAAGTTATATTAGAGAAGCTGCCACAAAATCGCCAAACTCTGATGTTCTCTGCCACCATGCCAAACTGGATTGTGAAGCTGACTCGGAAGTACCTGAAAAACCCAGTGACAATTGATCTTGTTGGGGATTCGGATCAGAAGCTCGCAGAAGGGATCTCACTATACGCAGTTGCGGTGGAACATCGTTCAAAAGCAGGAGTTATTGGACCTCTTGTTACTGAACATGCAAATGGTGGAAAATGCATTGTCTTCACCCAAACTAAACGCGATGCTGATAATTTGTCTTATGCATTGGGAAGAAAAAACTACAGATGTGAGCCATTACACGGGGATATCTCTCAAGCTCAAAGGGAAAGGACACTTCAACGGTTTAGAAATGGGGATATCAACTTGTTGGTTGCCACTGATGTGGCTGCCCGTGGCCTTGACATACCAAATGTTGACCTGGTGATACATTATGAACTGCCTACCACATCCGAGATTTTTGTTCATCGATCGGGTCGAACAGGGCGTGCTGGGAAAAAAGGAAGTGCAATCCTCATCCACTCAATGGATGAATCAAGGTCTGTCAGAGTTATTGAGCGTGATGTCGGATCCAGATTCAGAGAGCTTCCTCCAGTTGCCTCGGATGGCGCAGAGCTGGATATGTCTCGTGGCATGG | |||||||||
gi|18024526|gb|BM302151.1|BM302151 MCA047H12_23486 Ice plant Lambda Uni-Zap XR expression library, 0 hours NaCl treatment prescr TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): CTCTTTCTCTCTCTACTTTTTTTTTCTCTGTTTCTCTCTCTACCCCTAACTAGGGTTTAGCCCCTTCCTTAGGTCGGGCCAAATACCTAATAGATACACATACATACCCAATCAAATCAAAATCCAAATTATCAATACATATGGTCCTCTTTGTATTCTTCCTCAGCTTTCTTGAACTGCATCTTCCCTAATTTTTTTATCTTTTGTTTTTCCTCTCTCAGATCCAATTTTTTCTTTGGTAAATACTTATAATTTATCAAAAAAAAAAAAAGATGGATTTTTGGGAATTGAAAGATGGAAAATTTTAATTTGTGGGTTGCGGTTCAATAAAGCTGTGGGAAGATACAAATAGGCCCAACAAAAATTCAAGATCCGCCCTTTTTTTTTGCTGATCGATGATGGCTCTCTTCTTCTATTATGGTTCCTAAGTCCATCTTTTTTTCAATATATTTTTATCTTTTTGATCGCTATTTATTTAGATTTATCTTTTTTTTTTTCACGTCTTTTTATTTTTCTTACCTCATCTTTGTGGGTCTAACCCTAGTGTCCATAAGGGAAAGGGAA | |||||||||
gi|26561010|gb|CA833245.1|CA833245 MCS020A12_151768 Ice plant Lambda Uni-Zap XR expression library, 5 days 0.5 M NaCl treatment, TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): CGATCTCAGGATCGATTCAATGTTGATCAATGAGCGAGCTAGCTCCACAGGCAGGAACAATTACAAGTCCTGCCATGCTTTTCCACAGCTTTCTTGAACTTTCCGGTTCTTTTCTTCTTTTTTTTTCTTTCTAGTGAGAAACAAACCATCATTGGGAAAGTTCAAGAAAGCTGTGGGAAAATATGGCGTTTCCCAGGACTTGGACCGACTTATTTCCAATGACAGACCGTACACGGTTCATCTATTCCGTTTTGTGGTAAGTTTTTCCCCAATTATGTTCTCCTGGTAGTAATCAGGAAGATATATATATAAATCAGTATCATATGAGCAATATTTGATGAGCATGAATTATTGCATATCTGTAATCTTTGAGGAGTCATTAGAATTTAGTTGTTGATCTACAGTATCAGATTTGGGTAATTATTCCTTCTGCTGTTCCAATTCTTGAGATATTCTAGGGAATTTATTTGGGATCTGTTTGGATGGTAACTCACTGAAATTCAAGAAGATTTGAACACAAAAAAGAAGAAACTTTCAAAATGCTATCATTTTATTTATCTTTTTCTCTATTTACTTCTTCCTTGCTAATTTCAGAAAACAATTCCCATTCACTGCACCATTATTGCCCATGCAGTTGTAGAAAATACAAATTATATATNTTGCTAATATTTATTTTT | |||||||||