| mature miRNA: TTCCACAGCTTTCTTGAACTT species: Populus trichocarpa x Populus deltoides database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|46840135|gb|CN521766.1|CN521766 GQ0114.B3_G21 GQ011 Populus trichocarpa x Populus deltoides cDNA clone GQ0114_G21 5', mRNA se TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GTTTAATCTCGCAAGTCCTGGTCATGCTTTTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCCTATATATATAAATATATGTATGTATAGCGCCATGGAAGCTCAAGAAAGCTGTGGGAGAACATGGCAATTCAGGATTTTTTTGGGCTCTTTTCTTGCTGTTACGGTCAAGACCTCTCCTTTCCTTCATGGAATGCATACAAAAACCTTTCATCTTCTTCCTCCCTGTATGGATCGTGGATGAGCTCGTGCTTTGAAAGAAGAAGNACAACTACACCACAAATTAAAGCTAGCTNNNNNNGTGTTTATGGNNNNTCATAATTGNAGTNGGGGAAAAGANNTATANGATAAAAATAATGAAGCTTTG | |||||||||
gi|73932386|gb|DT515696.1|DT515696 WS02429.B21.1_E11 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS02429_ TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): ACAACAGGTAGCAGCTGATCTCTTGAAGCAATACAAGGAGAAGTTCCAAGGTGGGACTCTGGCTGTTACCTGGAACTATTTGAGAGAATCGATGAACACATACCTCTCTCAGCCAAATCCTGTAACATCACGTTGGGAAGGTGCAGAACACTTGCAAGACCCTAAATTCCAGTTAGATGCCTTCAGATACCGGACATCTAGATTGCTTCAAAGTGCTGCTGTCCGACTTCGCAAGCACTCTAAAACTCTTGGGGGCTTTGGAGCTTGGAATCGATGCTTGAATCACCTTCTCACGCTTGCAGAGTCCCATATTGAGTCTGTCATCCTTGCAAAGTTCATTGAAGCTGTGGAGAAATGCCCTGATGCAAGTTCGCAGGCTGCTTTGAAACTTGTCTGCGATCTTTATGCCTTGAATCGAATCTGGAATGACATAGGAACCTATCGAAACGTTGACTATGTGGCACCAAACAAAGCTAAGGCAATCCACAAGCTCACAGATTACCTAAGTTTCCAAGTGAGAAATATTGCGAAGGAGCTTGTTGACGCATTTGATCTTCCTGATCACGTTACAAGGGCCCCAATTGCCATGCAGTCGGAAGCATATGCTCGGTACACGCACCATGTTGGGTTCTGATTTCAATAGAAAGCAAAGGGCAGTGAAGGATAAAGAGCTTGTGTGAGAGTACATTCCATATTACTTTTTAAAGTGATTTTTATTTGTAAATATATTAAAATAATATTTTTTTTATTTTTAAAATACAAAAAAAAAAAAAAAAAA | |||||||||