mature miRNA: TTCCACAGCTTTCTTGAACTT species: Raphanus sativus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|161561700|gb|EY933611.1|EY933611 RS1EA86TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GAACTAACCTTTAGCCAGAAGATCAAACTACATGCAGGTGTCAACAAGCTTGCTTTGTTGAGTGTTGCCGTTGGTCTTCCGAATGTTGGTCAACACTTTGAGACGTGGAATAAAGGGGTTCTTGGACCGGTCACACTGAAGGGAGTTAACTCGGGAACATGGGACATGTCGAAATGGAAATGGTCCTATAAGATTGGTGTGAAGGGTGAAGCTATGAGTCTTCTTACGGACAGTTCCTCTGTGAGATGGAATCAAGGATCATACGTGGTCAAGAAGCAACCATTGACCTGGTACAAGTCTATTTTTGCCGCACCAGCAGGAAACGAACCGTTGGCCATAGACATGAACACTATGGGAAAAGGTCTAGTTTGGATAAACGGTAGAAACATTGGACGTCATTGGCCTGCTTATAAAGCTCAAGGAAACTGTGGACGTTGCAACTACGCTGGAACATTCGACGCAAAGAAATGCTTGAGTAATTGTGGTGAAGCTTCTCAAAGATGGTACCATGTACCACGTTCATGGCTCAAGTCTCAGAACGCTATATTTGTGTTTGAAGAATGGGGTGGTGATCCTTATGGAATCTCACTGGTGAAAAGAACCTGAAAGCTTCTTCTTGATTTTATCCTGAGTTTTCAAGACAAGTAAGATTGTTCGTCTCTCTTGGCTCTGCTTTGAAGATAGAGACAGAGCTGGACAACTACAATAATTGAATTGTGCAGTTACTACAGCATATTATACAACATGTACATTACTGTTTTTTCTTTT | |||||||||
gi|161573332|gb|EY944559.1|EY944559 RS3DV91JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): ATCTCCGGTTTGAAAGAGAGAATGTTCCATTTCTCATCAGAAGCAGTGAGTTCACTCAAATCAAAGGCCAATCAAGACTGCAGAACAACAACGACAATGATGATCTCTTCTCTGCAGTCACTAACCTTTTATATGGAGAAGCATTACAAGAGCAAGGAGCTTATCAAACGATCAAGAAACCACTTGCAGGTTTGCAGTAGGAACTAGAACAAGATTGAATCCACCGTTGCCTACGAATCACTTCGGAGTTTACACATCTCTCGCAAGCACCACTGCCAAAACTGGTGAAGTATTGGAGAATGTGTTAGGATGGGCTGCTTCGAAGCTGCATCAAGCTGTATCAGAAAAAAGCGAGAATATCAGTTCCGAGCTCGAACAGTGGTTGAAGGCTCCTTTTTTTGTGCAGCCGGATAAGTTTTCTGAACCGAACCTAATTCACATGGGAAGCTCGCCGAGGTTTGACAAGTACGGGAGCGAGTTTGGGATGGGGAAAGCTGTTGCGGTTAGGAGCGGTTATAACAGTAAGCATGACGGGAAGGTGTCAGCTTACCCTGGGAGAGAAGGAGGTGGAAGCATTGTTTTGGAGGTCTGTCTTTTGCCAGAGTTTATGGAAGCTTTGGAATCAGATCAAGAGTTCATGTCACTCGTCTCTGATTCTTGATCCTATTCATATTTCTCAGACAACAGAAACTAAGGTTTCTTTGTTTGATAAGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTCTGATTTTGATTTATTAATTGTCAAGATGGATACTGCAGTTGTTGGAGACAAATGTTTCAATTTTTTATTAAGATCAGAGTTGAAGTCAAAAAAAAAAAAAAAAAAA | |||||||||
gi|156171844|gb|EW731990.1|EW731990 RS3A462TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GGGTAAGGAAAGAGATGTCACCATCATCGTCTTACTTTCTCTCTCTCACTTTCTTCTTCCTTCTTCTAGTTTCATCTCTGAGCTTCTCGTCATCATCATCTTCCGATGACGACATCTCCGAGCTGTTCGACGCTTGGTGCCAGAGACACGGCAAAACATACGCTTCGGAAGCAGAGAGGCAACGCAGGATCCAAATCTTTAAAGACAATCAAGACTTCGTCACACGCCACAACGACGTCGCTAACTCTACTTACACTCTCTCACTCGACAACGCCTTCGCGGATCTGACTCACCGCGAGTTCAAGGCCTCTCGTCTCGGACTCTCTGCTTCTTCAGCTCCGTTGCTGATGATGGCTAAGGGACAGAGTGTTGAGAAATTCGGTGGAAAGGTTCCAGATTCTGTTGATTGGAGGAAGAAAGGAGCTGTTACTAATGTCAAAGATCAAGGAAGCTGCGGAGCATGTTGGTCTTTCTCGGCGACTGGAGCTATGGAAGGAATCAACCAGATTGTAACAGGAGATCTCATCAGCCTCTCTGAGCAAGAACTCATCGATTGTGACAAGTCCTACAACGATGGCTGCAATGGTGGTCTCATGGACTACGCTTTTCAATTTGTCATTAAAAACCATGGAATCGACACTGAGAAAGATTATCCTTATCAAGAACGTGATGGTACCTGCAAGAAGGATAAGTTGAAAACACGGGTTGTGACAATTGATAGCTATGCTGGTGTGAAATCAAATGACGAGAAAGCGTTACTTGAAGCTGTAGCGGCTCAGCCTGTTAGTGTTGGTATCTGTGGCAGCGAGAGAGCGTTTCAGCTATACTCTAAGGAATATCTC | |||||||||
gi|167438316|gb|FD948731.1|FD948731 RS2H217TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): TTTTTAGATCTTCGCTTCGCCGTCGCTTCTCACCGCTTTAACAACCCAATGGCCACTCAAGCTGCAGCTGCTGCCTCTTTCAATGGCAACCTTAAGAAAGCTGTGGCAGGTATAAAGCGTATCAATCTCGACGGTCTTCGTTGGCGTGTTTTTGATGCCAAAGGCCAGGTTCTCGGTAGACTTGCCTCTCAGATCTCTACTGTCCTTCAAGCCAAAGATAAGCCTACTTATTGTCCTAACCGTGATGATGGCGATATTTGTATCGTTCTCAATGCTAAGGATATCGGCATCACCGGTAGAAAGCTCACCGACAAGTTCTACCGCTGGCATACTGGGTACGTTGGACACCTGAAAGAACGAAGTCTGAAAGATCAGATGGCCAAAGACCCCACCGAGGTCATCCGTAAGGCTGTCTGGCGCATGCTTCCTACTAACAACTTGCGTGATGACAGAGATCGGAAGCTGAGGATCTTTGAAGGCAATGAGCATCCTTTTGGGGACAAGCCACTCGAGCCTTTCGTCATGCCTCCTCGTACCGTGAGAGAGATGCGACCCCGCGCTAGACGTGCTATGATCCGTGCCC | |||||||||
gi|156155892|gb|EW716038.1|EW716038 RS1AP50TFB RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GGATCTATCTCCGCCTCACTCAATTAGCTCCCTCCCACGGAAACAGGCACACCTGATCCGATTATCAGAAGCACTAGCTAGCTGGTTCATTCTCCCAGTGTGAGCAATGGCTTTGGTGATGCACTCGTACAAGGGAAACAAAAACTCTGACAAGGCATTCATTGCCGCAGAGTTCACTGGTGTGAAGATCGATATGCCTTCTGGCTTTGAGATGGGTGTCACCAACAAAACCCCTCACTTCCTCAAGATGAACCCTTTGGGAAAGATTCCTGTACTTGAGACTCCTGAGGGTCCTATCTTTGAGAGTAACGCCATTGCCCGTTATGTAAGCAGATTGAACGGTGACAATTCGTTGAACGGCTCCTCCCTGATCGAATCTGCACATGTTGAGCAATGGATCGATTTCTCCACAAATGAAATTTATGGAAACATCTTCAACTGGTTCGTCCCTAGAATGGGCTTTATGCCATACAGTGTTCCTAGTGAGGAAGCTGCGATCTCTGCTTTGAAAAGAGGACTTGAGGCTCTGAACACACATCTCGCTTCCAACACTTACCTTGTTGGACACTCTGTCACCCTTGCTGATATCATCACCGTCTGCAATTTGAACCTCGGGTTTTCCACTGTCATGACCAAGAGCTTCACCTCTGCATTCCCTCACGTTGAGAGATACTTCTGGACCTTGATCAACCAGCCAAACTTCAAGAAAGTTGTGGGTGATGTCAAACAGACTGAATCTGTC | |||||||||
gi|156160285|gb|EW720431.1|EW720431 RS1AR68JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): CAACCGAACTTCAAGAAAGTTGTGGGTGATGTCAAACAGACTGAAGCTGTCCCTCCTGTCGCTTCCAAGAAAGCTGCCCAGTCTGCAAAGCCCAAGGAGGAGCCTAAGAAAAAGGCTGCCCCTGCACCAGAGGCACCTAAGGTTGTTGAAGAGGAAGAAGAGGCACCAAAGCCCAAAGCAAAGAACCCTCTTGATTTGCTACCACCAAGCCCAATGGTTCTGGATGAGTGGAAGAGGCTTTACTCGAACACCAAATCTAACTTCCGTGAGGTTGCTATTAAAGGATTTTGGGACATGTATGACCCAGAGGGATACTCACTATGGTTTTGTGACTACAAGTACAACGACGAGAACATGGTGTCCTTTGTGACGCTCAACAAGGTAGGCGGGTTCCTTCAGAGAATGGACTTGGCTTGTAAGTACGCCTTTGGAAAGATGCTGATTTGCGGGTCAGAGGCTCCGTTCAAGGTGAAGGGTTTGTGGTTGTTCAGAGGGCCAGAGATCCCAAAGTTCATAATGGACGAGGTGTACGACATGGAGCTGTACGAATGGACAAAGGTTGACATTTCGGATGAAGCACAGAAGGAGCGTGTTAGCCAGATGATTGAAGACGCAGAGCCATTTGAAGGTGAAGCTTTTTTGGACGCCAAGTGCTTCAAGTGAAAAGATAATTGGTTTGGTTTGACAATTAGTTTTTGGTTTTGATATACTATGAGTCGCTTATGTTTAGTACAGTGGTTTAAGGACAAGAGGTTGTGGTTTTAAGTAATACTTAATAGTTTTGG | |||||||||
gi|161568029|gb|EY939532.1|EY939532 RS2DW30TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GGGAGTTATCTTCGCCGCTAGAGACACCCCGGCGAGTGTGATGACGTGGATACTTAAGTACTTAGCTGACAATCCCAACGTTCTAGAGGCCGTTACTATGAGCAAATGGCAATAAGGAAAGACAAAGAAGAAGGAGAGTCTCTAACGTGGGTTGATACAAAGAGGATGCCAATAACTTCAAGAGTTATTCAAGAAACGTTAAGAGTCGCTTCAGTCTTATCTTTCACGTTCAGAGAAGCTGTGGAAGATGTAGAATACGAAGGATATTTGATACCTAAAGGATGGAAAGTGTTGCCGCTTTTCAGAAACATTCATCATAGTGCTGATATCTTTTCGAATCCTGGGAAGTTTGACCCATCAAGATTTGAGGTGGCTCCAAAACCCAATACTTTCATGCCATTTGGTAATGGGACACACTCGTGTCCTGGAAATGAATTAGCCAAGTTTGAAATATCTATCATGATTCATCATCTGACCACCACGTACAGATGGTCAATAGTTGGAGCTAGTGACAGGATTCAGTATGGGCCATTTGCGCTTCCCCAAAACGGACTGCCCATTATGCTTGCTCGGAAGTCGGAGATCCATATGTAGTACTACTACGTGATTGCCCTTAGCTTTCTATAATTGGAAAGAGAGGGGGGGCTAGAGAAGAAATTAAACTATTCTTTATTTTCTTGCTAAAGAAATAGGAGAGTGAAGGAAATGAATCA | |||||||||
gi|166141534|gb|FD574875.1|FD574875 RS2FK77JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): TTTTTCCACAGCTTTCTTGAACTTCCTTTTTCATTTCCCTTCTTTTAAAGATGTAATAACTAAAGATTGTTTTTAAACATTTAACACTCTAGAAACAAAAAAAAAAGCTCAAGAAAGCTGTGGGAAAACATGTCAGGTTCTTTTAAAGGCACTAATTTTATCATAATTTGAAGGTAAGTGTTATTTATGTGAATCGTAACTTGGTACCTTTAGGTAGGATCTGTTTACTGGAAAGTAGATAAGAGATTATATATTTGTCTCCAATGAAGGGATACATATATATGGGTATCTGAATATTTTGTACTGAAAATTGCCAAATTCTATACAGCTTCTAATTTCCCGTAAATCCTTTTCTTATTTTTGAAATTGAATGTAAAATTTTATTCAATAAAAGCATTTTTACTACTATTGCAGCCAATTGTTATTTTTGTACATTTTCCGATTTTAAGTTTGAGTTTGAGTTTGGGTTTAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|167435483|gb|FD939455.1|FD939455 RS1GE42TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TTCCACAGCTTTCTTGAACTT |