| mature miRNA: TTCCACAGCTTTCTTGAACTT species: Solanum tuberosum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|66837825|gb|DR035930.1|DR035930 20190.2 Swollen Stolon Solanum tuberosum cDNA clone 20190 5', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): AACAGGTTGACTATGTCAATTCTATGAGGGCTGCACGAGAATTCAGTTCAAGGGTTTCTGATTCTCTAAAGATGGAGGTCTTCCCGTATGCAGTGTNNNTATATGTCTTTGAGCAATATTTAAGCATATGGAGGACAGCCCTAATTAACTTAGCGATTGCTATTGGTGCTGTATTTATTGTATGCTTAATTATCACTTGTAGTTTTTGGACTTCAGCAATTATCTTGCTTGTGCTGACCATGATTGTTCTGGATCTTATGGGAGTAATGGCAATTCTAAATATCCAGCTCAATGCTGTATCAGTTGTTAACCTTGTGATGGCCGTTGGTATTGCTGTTGAATTCTGTGTCCATATAACACATGCCTTCTTGGTTAGCAGTGGAGATAGAAACCAACGCATGAAGGAGGCGCTGACTACTATGGGCGCTTCTGTATTCAGTGGTATCACGCTTACAAAGCTTGTCGGTGTCATTGTTCTTTGTTTTTCAAGGACAGAAGTTTTTGTGGTTTACTACTTTCAAATGTACCTGGCTTTGGTTCTCCTTGGTTTTCTACACGGGCTTATATTTTTACCTGTACTATTAAGCATTTTTGGTCCGGCATCAAGATGTGTGCTTGTAGAGAAGCAAGAGGATCGGACATCTACATCTTCCCAATTCCTAATCTAATCAGGTGTAAAGGAGTCTCCTCGGTAGGAAATATATCCTTTTTGTTCCAAAAGCCACGACTTGATGTTTGATCCATTAGATAACAAGGCACGAATAATTGGGTGGATCTTACCTTACAGACACAATTCCTGATTACAAGCTAATGCTTTAAAAAGAGTTACCTTTTGTAGGGATACTAATCTTCCTTTCCCCTAAATTGGGGGTACTCAAGGGACCCCTTAAATGTCCATGGGCGCATTTATAACATTTTAGGAAAAAAGCCCTTCCGGCAATAAGTTTGGTAAAACTGTGGAACGTCAACTCGACACTTAATTTCCTCTGCGAAAGCACGGCAACACGACACGGCCACAACCCAACTCTCGGGTCCCCAGCCTCCGAAAAGAAACAACAAACCCGCGGGGG | |||||||||
gi|78746558|gb|DV622961.1|DV622961 92363.1 Cold Sweetening C Solanum tuberosum cDNA clone 92363 5', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GTCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCGTTTGACTGGAGAGATAAAGGTGTGCTTGTTGGTGTGAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCGGTTGCTGCCATGGAATCAATAAACACGATAGCAACCGGGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAAGTCGTACAATCAAGGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATTCGTCATCAATAATGGAGGAATTGACACTGAAGAAGACTACCCTTACAAAGAACATAATGGCGTATGCGACCAGTATAGGAAAAAGGCCAAGGTTGTTAAAATAGATAGCTATGAAGATGTTCCTGTTAATAACGAAAAGGCGCTACAAAAGGCTGTTGCACATCAACCTGTGAGCATTGCAATTGAAGCTGGTGGCAGAGACTTCCAGCACTACAAATCTGGTATCTTTACTGGAAAATGTAGTACTGCAGTGGATCATGGTGTAGTTGTTGCTGGATATGGTACTGAGAATGGCATGGATTATTGGATCATTAGGAACTCATGGGGAGCTAAATGGGGAGAGAAGGGCTACCTCAGAGTCCAACGTAACGTTGCCAGGTCTAGTGGCTGTGTGGTT | |||||||||
gi|78751165|gb|DV627568.1|DV627568 98213.1 Cold Sweetening C Solanum tuberosum cDNA clone 98213 5', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): CCTATTGAAAATAGATTTCCCTTGCTTCCACTTCCCCCACGCACCATTAATGAGGCACTTCCCCTAACAAAGAAATGGTGGCCATCTTGGGATCCACGGACAAAGTTAAATTGTTTGCAAACAGCTATTGGAAGTGCAAGATTGACTGATAGGATCAGGAAAGCTGTGGAGGCCTTTGACGGTGAGCCACCTATGAGGGTGCAAAAGTTTGTTCTTGATCAATGTCGGAAGTGGAATTTGGTGTGGGTTGGGAGAAACAAAGTTGCTCCTTTGGAGCCAGATGAATTTGAAATGCTATTGGGGTTTCCAAAGAACCATACCAGGGGAGGTGGTATAAGTAGGACCGATAGATACAAATCGCTTGGTAACTCATTCCAGGTTGACACAGTGGCATACCATTTATCAGTGTTGAAAGACATGTTTCCAAATGGGATGAACGTCTTATCACTCTTCTCTGGGATTGGCGGTGCTGAAGTTGCTCTTTACCGTCTTGGGATTCAACTAAACAATGTGGTCTCTGTGGAAAAATCTGAAGTGAACAGAAACATTGTGAGAAGTTGGTGGGAGCAAACTAATCAGAGAGGCAATCTTATTGATTTTGATGATGTGCAGCAGTTGAATGGAGACCGCTTGGAGCAACTGATAGATTCATTTGGCGGATTTGATTTACTGATTGGTGGAAGCCCGTGCAACAATCTTGCAGGCAGTAACACCGTGAGCACGGACGGTCTTGAAGCAAAAATCGTCTCTATTTATGACTATTTCGGATACT | |||||||||
gi|280982630|gb|GT888890.1|GT888890 VB_D01-100 Potato tubers 24 h infected with Fusarium eumartii Solanum tuberosum cDNA clone V TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): ATGGTAGCTCACAGCTCAACTCTCACCATATCCCTACTTCTCATGCTCATCTTCTCCACCTTATCCTCCGCTTCCGACATGTCAATTATTAGCTACGACGAGACTCATATTCACCATCGTACCGACGATGAAGTCTCGGCGTTGTACGAGTCCTGGCTAATCGAGCACGGAAAATCGTACAACGCCTTAGGAGAAAAGGATAAGAGATTCCAGATCTTCAAGGATAACTTGAAATATATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTGACGAAATTCGCCGATCTGACTAATGAGGAGTACAGGTCGATTTACTTGGGTACGAAGAGTTCCGGTGACCGGAGGAGGTTGTCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCAGTTGACTGGAGAGATAAAGGTGTGCTTGTTGGTGTTAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCCGTTGCTGCCATANAATCAATAAACGCGATAGTAACCGGGAATTTGATATCNCTATCNNAGCANGAGTTGGTGGATTGTGATAAGTCNTACAATTCA | |||||||||
gi|78747071|gb|DV623474.1|DV623474 92918.1 Cold Sweetening C Solanum tuberosum cDNA clone 92918 5', mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): AACAAAAAAAAAACATCAACCTATCATGGCAGCTCACAGCTCAACTCTCACCATATCCCTACTTCTCATGCTTATCTTCTCCACCTTATCCTCCGCTTCCGACATGTCAATTATTAGCTACGACGAGACTCATATTCACCATCGTTCCGACGATGAAGTTTCGGCGTTGTACGAGTCCTGGCTAATTGAGCACGGAAAATCGTACAACGCTTTAGGGAGAAAAGGATAAGAGATTCCAGATCTTCAAGGATAACTTGAAATATATAGACGAACAGAACTCTGTTCCGAATCAGAGTTATAAGCTCGGATTGACGAAATTCGCCGATCTGACTAATGAGGAGTACAGGTCGATTTACTTGGGCACTAAGAGTTCCGGTGACCGGAGGAAGTTGTCGAAGAACAAAAGTGATCGGTATCTTCCTAAAGTTGGGGATAGCTTGCCGGAATCAGTTGACTGGAGAGATAAAGGTGTGCTTGTTGGTGTGAAGGATCAAGGAAGCTGTGGGAGTTGTTGGGCATTCTCTGCCGTTGCTGCCATGGAATCAATAAATGCGATAGTAACCGGGAATTTGATATCACTATCAGAGCAAGAGTTGGTGGATTGTGATAACGTCGTACAATGAAGGTTGCGATGGTGGTCTTATGGACTACGCCTTTGAATTCGTCATCAATAATGGCACGAATTGACACTGAAGAAGACTACCCTTACAAAGAACGTAATGACGTATGGCGACCAATATAGGAAAAATGCCAAGGTTGTTACAAATAGATAGGCTATGAAGAATGTTCCTGGTTAATAACAGAAAAGGGCGCTACAAAAAGGCTGTTG | |||||||||