| mature miRNA: TTCCACAGCTTTCTTGAACTT species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|160708764|gb|EH411509.1|EH411509 RTHAIR1_69_B09.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_6 TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): CCTCGTGCCGAATTCGGCACGAGGGATGAGCAGTTGGAGAAGGTTATGAAGACTGAGAGGTTCAAGCCTGACAAGGGATTTACTGGTGCTTCAGAGAGGACTGGCAAGCGAGACAGGCCTGTGGAGTTCGATAAGCAGGAAGAAAATGATCCATTTGGTCTGGATCAGTTCTTGACTGAGGTGAAGAAGGGTAAGAAAGCTGTGGAGAAGATTGGAGGTGGAGGAACCATGAAGGCGAGTGGTGGGTCCTCAATGAGGGACGATTATGATGGTGGATCTGGGAGGTCCCGCATTAATTTTGAAAGGGGGCGCTGAGGTATCTGCTCTGCTTCTGCAGATTTTGAATGCTTTCTCAAATATCTTCTAGCAGGAGGTCATAAGAAGCTGAACTCTGATAAGAAGAGTGTGGCACCTGTGCTGTTACTCATGTGCCTACTTTCAATGGTTGTGCTAAAGAGTGTACTATACGGATCCTATGGTGTCTATGTACTATGTTTTGTATCTGTTCATTATAGGATCTATGAACTCTGTTTACATGTTCCATCAATTTTTATGGTA | |||||||||
gi|57811243|gb|CX612523.1|CX612523 GABR1_2_H09.g1_A002 GA- or brassinolide-treated seedlings Sorghum bicolor cDNA clone GABR1_2_ TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): CAGCAGCCTGCAGCCGGAGAGCGAGAGGCAAAGTACTCCAGAGAAGAGCTGGCAGATATGAAGAGCGGCAGCTGCAGGCACGTCTTCCTCGTGGTGTCGCTGCAGCTGCTTCTTGTGGCGCCATGGCAGGGCGAGACGGCAGCAGCAGCTCGAGCTCTCAACTTCACCAGGCAGGATTTTCCCAGGGCCTTCGTCTTTGGGGCCGGCACATCAGCTTATCAGTACGAAGGGGCAACCGATGAAGATGGAAGGAGCCCAAGCATATGGGACACGTTTACTCATGCAGGGAGGATGCCGGACAAAAGCACTGGCGATCTAGGGGCAGACGGCTACCACAAATACAAGGAAGATGTGGAATTGATGAGTGGTACTGGCCTGGAGGCCTACCGCTTCTCCATTTCTTGGTCCAGGCTTCTTCCAAGAGGAAGAGGACCCATCAACCCCAAGGGTCTTCAGTATTACAACAACCTCATCAATGAGCTAATCAAACGGGGAATCGAGATACACGTGACCCTGTACCACCTGGATTTCCCTCAGATCCTGGAGGACGAGTACCATGGCTGGCTCAGCCCCAGGGTGGTGGAGGACTTCACGGCGTACGCGGACGTGTGCTTCCGGGAGTTCGGCGACCGGGTGAAGCACTGGACGACCATGGACGAGCCGAACGTGATCTCCATCGCGGCCTACGACAACGGCGCCTTCCCGCCGTGCCGCTGCTCCGCGCCGTTCGGGGTCAACTGCACC | |||||||||
gi|12775357|gb|BG240284.1|BG240284 OV1_20_B05.b1_A002 Ovary 1 (OV1) Sorghum bicolor cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GCACGAGGCCGACTCGTGCACAGCAGCACCGCCTCGACTCGGGAGGGAGAAGGAGAGGGGAGGCAGGGCAGCGCGGAGCCCTCCTCCTCCGATCCATCGCCGCTCTCGACAATCCGGGCGTCTGCTCGTGCTCGACGACGATGGATAGAATGGAGAAAACAGAGAGGTTTGTACAGTTAAAGAAATTGGCAGGCTCTGTGATATCATACTGGTCAATCATATCTGTTCCTGTGGAAGAGAAGCTAAACTTCATACCTTTACTTCATTATGCTAAGGCCGAGTCAGTGGATGAGATACCTGAACACCTTGCTGTTTCAGAGGACTTCATGAAAACTGTGGAAAATGAAAGTAATAGGCTTGAGAAGATTGTGGCTGAGATGATTGT | |||||||||
gi|31385201|gb|CD463933.1|CD463933 ETH1_47_D04.g1_A002 Ethylene-treated seedlings Sorghum bicolor cDNA clone ETH1_47_D04_A002 5' TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): AAAAATCTAAAGTAAGGCAAGAAAAAACAAATGAAATCATATATCGCAATTCTTTTCGTTTTCGCATTAGTGTTCCAGGCACATGCTCTCACGCATAGAAGGAACCAAAAACACTTTTCACTTGGAAAATCAGGTATGAAGGACGGATCAGATCATGAAGACAATTTCCTTGACGTTGAACCACAAGTATTATATGCAACCATTGAAGAACTTGCTGCTGAAGAAGTCGCCACCGCTATTACTGAAGCTGCTGTGGAGGCTGCCGAACACACTGACTGCCTCACTGAACAACAAGTTGAGGAAGTTGTGGAACAAATCATTGAGGATGGAGGCATTGTTGACCAAGTTGCTGAAGCTGTTGAAGATATCCCCATTGAAATCGTTGTTGAAGCCGCTGAACAGGCTGTTGCTACTGAAGAAGCTACTGCTGCTATCGAAGATGCTGGATTAGACACTGAAGATCTTGCTGACGCTGTCGCTGATAATCTCGGCGAAGAAGTCGCTGAACAACAAATTG | |||||||||
gi|160709888|gb|EH408573.1|EH408573 RTHAIR1_26_E11.g1_A002 Sorghum bicolor BTx623 Root hair Sorghum bicolor cDNA clone RTHAIR1_2 TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): TCTCAGTTGACTTTACAAAGGTTGAGGAAGCTGTAGAAAGCCTGAGCAGGGAGATACTGACAATACAGGCAAAGGGTGATAAGCCTTCTGCCCAGTCTCTTCTCCAGTCCCGTGCGACCTTGACACAACCATTGAGAGTGGCATTGGAGAAGATAGAACACATGCAGGTACCTGTTGACATTGCCCCGATATTCGGCACGGCAAACAAGCTACTTGCAAACGTTTAGTTGGATTCAGCAATTCAGCAAACGTTGTGCTTACCCCCCAGGCCCCCAAGAATAAAGGCAGCGCTAGGAATTGCTCAAGAATAAGGCAGCGCTCCATGTCAAGCAAAGCTGATAAAAACAAGGCGATGAGTGACTTTTCATCGGAAGGAAAATTGTTTAGCGCTACTCTTAAAGTGGTGTTTGATTAGTGAGAATGGGAATGCCCCTCCATTGTTTGCTCGGAACTGAATCTAGCTTTGCCTGAGCAATTGTAAAGTATATTTCTTTTGCTGTGAATCACTGGAACTCATGACGTGTTTTTTTT | |||||||||
gi|7659475|gb|AW745737.1|AW745737 WS1_37_C05.b1_A002 Water-stressed 1 (WS1) Sorghum bicolor cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GCACGAGGGTCATCTACAGTGACTTGACAAGGGAAAGCAAAAGAAAGCTTATGCAACTGATGCAACAATGGTCTGAGTGGCAGGCCAGAAGGCAGCACCATTTGAAGGAAGCTGTGGAAGGGACCTTAGAAAGTGGTGAAGAGACTTATTATCCAGCATTACATGTTGGTTCAGAGAAATCTTGTGCTGTGTCATTTTGGGTGGATAACCAAGCAAGGGAAAGTGACATCCACGACGTGGTGTCGTCGTCGTCGTCGCCGGGCGGCAACTGGAAGGTCTACTTCTACGTGTCCCCCTACGCGCGCACCCGCGCCACGCTCCGCGAGATCGGCCGCGCCTTCCCTCGGGACCGCGTCATCGGCGCCCGCGAGGAGTGCCGCGTCCGCGAGCAGGACTTCGGCAACTTCCAGGTCGAGGAGCGCATGCGCGCCGTCAAGGAGACTCGCCAGCGCTTCGGCCGCTTCTTCTTCCGCT | |||||||||
gi|30972369|gb|CD228935.1|CD228935 CCC1_10_F10.g1_A007 Callus culture/cell suspension Sorghum bicolor cDNA clone CCC1_10_F10_A00 TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): TCTCTTCTTCCTTCTCCCAACCGGCTCAAAACCCTAGCCCAACACCGCAGGGTCGCCGACGCTCGCCCGGCCGCCGCCACTGCCGCCGCCGGGGACGATGGCGAAGCCTCGGCGCGGCCGCTCCGCGTCTCGCTCCTCCTCGGGCTCTTCCTCCCGCTCGCCGTCCCACTCCGTCTCCTCCGGCTCCGTCTCGTCGCGCTCGCGGTCGCGCTCCCGCTCCTTCTCGTCGTCGTCCTCGCAGTCCCGGAGCCGCTCTCCTCCTCCGGCTAAGCGCGGTTCGCCTGGAGCACGGAAAGGCCGATCACCTTCACCGCTCCCTTAGTGCTTGTTCCACACGATCATCGAACACGACGACGGCAACGATGGCCAGCACGGCGGAGCGAGCCGACGAGGAGGAGGAGGCGTGCCGGGTGGCGCTGCTGGACGCCGGCGTGAAGAAGGAGGAGTGGCAGGTGGTGGTCGGCGGCGGCGGCGACGGCGACGGCGGCAATAATAAGCAGCAGCTCGCGGCGCGGGTGTGGGAGGAGTCGAGGAAGCTGTGGAACATCGTGGCGCCGGCCATCTTCAGCCGCGTCGTCACCTACAGCATGAACGTCATCACGCAGGCCTTCGCCGGCCACCTCGGCGACCTCGAGCTCGCCG | |||||||||
gi|18065134|gb|BM325997.1|BM325997 PIC1_64_D11.b1_A002 Pathogen-infected compatible 1 (PIC1) Sorghum bicolor cDNA, mRNA sequence TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): GCACGAGGGAAGAATGAGAGCTCACTTTGAGTTCATGGAGAAGCTGGGAGTTGACAAATGGTGCTTCCATGATAGGGATATTGCCCCTGATGGGAAAACTCTTGAAGAAACAAATGCTAACTTGGATGAGATAGTTAAGCTAGCAAAGCAGCTCCAGGGTGAGACCAACATAAAGCCATTGTGGGGTACGGCACAGCTCTTTATGCATCCACGTTACATGCATGGAGCTGCTACTAGCCCAGAGGTTAAAGTATATGCTTATGCGGCTGCACAAGTTAAGAAAGCTTTGGAGGTCACTCACTACC | |||||||||
gi|31333537|gb|CD427274.1|CD427274 SA1_18_F02.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_18_F02_A00 TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): AAAAACAGCAGCAGCCTGCAGCCGGAGAGCGAGAGGCAAAGTACTCCAGAGAAGAGCTGGCAGATATGAAGAGCGGCAGCTGCAGGCACGTCTTCCTCGTGGTGTCGCTGCAGCTGCTTCTTGTGGCGCCATGGCAGGGCGAGACGGCAGCAGCAGCTCGAGCTCTCAACTTCACCAGGCAGGATTTTCCCAGGGCCTTCGTCTTTGGGGCCGGCACATCAGCTTATCAGTACGAAGGGGCAACCGATGAAGATGGAAGGAGCCCAAGCATATGGGACACGTTTACTCATGCAGGGAGGATGCCGGACAAAAGCACTGGCGATCTAGGGGCAGACGGCTACCACAAATACAAGGAAGATGTGGAATTGATGAGTGATACTGGCCTGGAGGCCTACCGCTTCTCCATTTCTTGGTCCAGGCTTCTTCCAAGAGGAAGAGGACCCATCAACCCCAAGGGTCTTCAGTATTACAACAACCTCATCAATGAGCTAATCAAACGGGGAATCGAGATACACGTGACCCTGTACCACCTGGATTTCCCTCAGATCCTGGAGGACGAGTACCATGGCTGGCTCAGCCCCAGGGTGGTGGAGGACTTCACGGCGTACGCGGACGTGTGCTTCCGGG | |||||||||
gi|31333748|gb|CD427485.1|CD427485 SA1_30_H09.g1_A002 Salicylic acid-treated seedlings Sorghum bicolor cDNA clone SA1_30_H09_A00 TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): ACAGCAGCAGCCTGCAGCCGGAGAGCGAGAGGCAAAGTACTCCAGAGAAGAGCTGGCAGATATGAAGAGCGGCAGCTGCAGGCACGTCTTCCTCGTGGTGTCGCTGCAGCTGCTTCTTGTGGCGCCATGGCAGGGCGAGACGGCAGCAGCAGCTCGAGCTCTCAACTTCACCAGGCAGGATTTTCCCAGGGCCTTCGTCTTTGGGGCCGGCACATCAGCTTATCAGTACGAAGGGGCAACCGATGAAGATGGAAGGAGCCCAAGCATATGGGACACGTTTACTCATGCAGGGAGGATGCCGGACAAAAGCACTGGCGATCTAGGGGCAGATGGCTACCACAAATACAAGGAAGATGTGGAATTGATGAGTGATACTGGCCTGGAGGCCTACCGCTTCTCCATTTCTTGGTCCAGGCTTCTTCCAAGAGGAAGAGGACCCATCAACCCCAAGGGTCTTCAGTATTACAACAACCTCATCAATGAGCTAATCAAACGGGGAATCGAGATACACGTGACCCTGTACCACCTGGATTTCCCTCAGATCCTGGAGGACGAGTACCATGGCTGGCTCAGCCCCAGGGTGGTGGAGGACTTCACGGCGTACGCGGACGTGTGCTTCCGGGAGTTCGGCGACCGGGTGAAGCACTGGACGACCATGGACGAGCCGAACGTGATCTCCATCGCGGCCTACGACAACGGCGCCTTCCCGCCGTGCCGCTGCTCCGCGCCGTTCGGGGTCAACTGCACCGCGGGCAACTCCAGC | |||||||||
gi|45993458|gb|CN150821.1|CN150821 WOUND1_71_E02.g1_A002 Wounded leaves Sorghum bicolor cDNA clone WOUND1_71_E02_A002 5', mRNA s TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): TGTTCACGACCAGCCGAGTTCGCAGCAGCACTCTCCTCAGTGGAGTCCCTCTTGGTCATCGTCTCGTCGTTATCCCATCCCATCCCCTCCCCGGGGATTGGCGGCGTGGGGGAGCATCTATCGGTCTTCTGGAGATTGCCTGGTGCCCCTACAAAGGCTTGGCCTTGGGAGGATGGCACAAATTCGTTGGCCATGGCTAAGAGAAGAATGAGAGCTCACTTTGAGTTCATGGAGAAGCTGGGAGTTGACAAATGGTGCTTCCATGATAGGGATATTGCCCCTGATGGGAAAACTCTTGAAGAAACAAATGCTAACTTGGATGAGATAGTTAAGCTAGCAAAGCAGCTCCAGGGTGAGACCAACATAAAGCCATTGTGGGGTACGGCACAGCTCTTTATGCATCCACGTTACATGCATGGAGCTGCTACTAGCCCAGAGGTTAAAGTATATGCTTATGCGGCTGCACAAGTTAAGAAAGCTTTGGAGGTCACTCACTACCTAGGTGGTGAAAACTATGTGTTTTGGGGTGGAAGAGAGGGTTACTAAACTCTTCTGAATACTGATATGAACAGAGAACCTGACCATCTGGCTAACTTTCTTCAAGCTGCTGTTGACCA | |||||||||
gi|45977232|gb|CN140963.1|CN140963 OX1_48_B01.g1_A002 Oxidatively-stressed leaves and roots Sorghum bicolor cDNA clone OX1_48_B0 TTCCACAGCTTTCTTGAACTT EST sequence (targeted fragment marked with yellow): AAGAGCTGGCAGATATGAAGAGCGGCAGCTGCAGGCACGTCTTCCTCGTGGTGTCGCTGCAGCTGCTTCTTGTGGCGCCATGGCAGGGCGAGACGGCAGCAGCAGCTCGAGCTCTCAACTTCACCAGGCAGGATTTTCCCAGGGCCTTCGTCTTTGGGGCCGGCACATCAGCTTATCAATACGAAGGGGCAACCAATGAAGATGGAAGGAGCCCAAGCATATGGGACACGTTTACTCATGCAGGGAGGATGCCGGACAAAAGCACTGGCGATCTAAGGGCAGACGGCTACCACAAATACAAGGAAGATGTGGAATTGATGAGTGATACTGGCCTGGAGGCCTACCGCTTCTCCATTTCTTGGACCAGGCTTCTTCCAAGAGGAAGAGGACCCATCAACCCCAAGGGTCTTCAGTATTACAACAACCTCATCAATGAGCTAATCAAACGGGGAATCGAGATACACGTGACCCTGTACCACCTGGATTTCCC | |||||||||