| mature miRNA: TTCCATTGCTGATCAGCAAC species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52493621|gb|CV240646.1|CV240646 WS0251.B21_P08 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS0251_P08 3', mRNA sequence TTCCATTGCTGATCAGCAAC EST sequence (targeted fragment marked with yellow): GTTTTTCTTGGTTTTGCAATCTTGGCCCTTTACAGCTACCCCTCTCTTCTTCCTTCAAGAAAAATGGCTGAAGAAAGTCCCAAGTCCATCTATGACTTCACTGTCAAGGATATCCATGGAAACGATACGAGTCTAAGTGAATACAGTGGGAAGGTGCTCCTTATCGTGAATGTTGCTTCCAAATGTGGCCTCACACATTCAAACTACAAGGAATTGAATGTTTTGTATGAAAAGTACAAAAACCAAGGGTTTGAGATCTTGGCATTTCCTTGCAACCAGTTTGCTGGACAAGAACCAGGAAGCAATGAAGAGATTCAGGACACTGTATGCACAATTTTCAAAGCTGAATTCCCAATCTTCGATAAGATTGATGTGAATGGGAAGAACACAGCACCTGTCTACAAGTTCTTAAAATCAGAGAAAGGAGGGTATTTTGGAGATGCCATCAAGTGGAACTTTACCAAATTTTTGGTAAACAAAGAAGGAAAGGTTGTTGAGAGATATGCTCCTACTACATCACCTCTTAAGATTGAGAAAGACATTCAGAATCTGCTGGGATCTTCCTAAGGACCAAGGAAATTGGCATATACTGGGAATATTGTTGAAGTACATGAAATGTGGAATGTTATGTGCTTGTGGACTTGATTTATGAATTTGTATTATTGATCAGCATTGGAAGTATTTATTTTCATAATGGATAAGATGGACCTTGTACTTGGATGATTGCCTGGAAAAAATAAAGATGATTTTAGATGCCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73889062|gb|DT491800.1|DT491800 WS02548.C21_N04 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02548_N04 3', mRNA sequence TTCCATTGCTGATCAGCAAC EST sequence (targeted fragment marked with yellow): TTCCCGGAACACAGTCCAGGATAACCGTGACCATGTATATTTCTCTTCGATGCTGTCATTTCGAAATGACCGCTTCAACCGCTGTTTCACCTCCCAAAAAGCAAGGTTGGCTTGACGAGTGCAGATGTGGAGCAATAAAAAAAATCTCTTTCTTTCGGGCAAAGAGAAGCGCTTTTGCTACTGAGAAAACGAACGGTCAGCGCGAAGGTTCAAGACTTAGCCGAGCGTTAGCGAAGCTAGATTCTCATAGCGAGGCGCTTCGAGTTAGCGAAGCGCTGTAGTAGAAGCCCTATGTGCTATAATGCTGAGCCAAGGACGCTCCGCCTTAGCTATAGAAGCAGTCAACTGAGTTCTGAACGACTCCGCTCCTTGGTAATGGCTTAATCTATAGATAGAAAGCCTTATGATGGGAAACTATCACGTTAGGTTTGGAGAGAGATGGGACCGGTTATACAATAGGGGGAGCAAATGCAAGCTTTTTTCTTTCAATAGCCGGCCAAATGACTACAGGATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTTCTTCTACCTATACCGCAGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCTTACCGTCGTAAAATAAGAGCACCTGGCTTTGCCCATTTACAAGGACTCGATTCTATGTCCAAACATCACATGCTAGCGGATGTGGTCACCATCATAGGTACTCAAGATATTGTCTTTGGAGAGGTGGATAGATAGGCTTTCTATGAAAGCTCGATTAGGACCCTAGCTTTATTACAAGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73886784|gb|DT489522.1|DT489522 WS02542.B21_H09 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02542_H09 3', mRNA sequence TTCCATTGCTGATCAGCAAC EST sequence (targeted fragment marked with yellow): GCGAAGCTAGATTCTCATAGCGAGGCGCTTCGAGTTAGCGAAGCGCTGTAGTAGAAGCCCTATGTGCTATAATGCTGAGCCAAGGACGCTCCGCCTTATCTATAGAAGCAGTCAACTGAGTTCTGAACGACTCCGCTCCTTGGTAATGGCTTAATCTATAGATAGAAAGCCCTATGATGGGAAACTACCACGTTAGGTTTGGAGAGAGATGGGACCGGTTATACAATAGGGGGAGCAAATGCAAGCTTTTTTCTTTCAATAGCCGGCCAAATGACTACAGGATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCCGTACCAGCTTCTTCTACCTATACCGCAGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTCTGCCCATTCACAAGGACTCGATTCTATGTCCAAACATCACATGCTAGCGGATGTGGTCACCATCATAGGTACTCAAGATATTGTCTTTGGAGAGGTGGATAGATAGGCTTTCTATGAAAGCTCGATTAGGACCCTAGCTTTATTACAAGCCAAAAAAAAAAAAAAAAAA | |||||||||
gi|73889526|gb|DT492264.1|DT492264 WS02550.C21_C05 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02550_C05 3', mRNA sequence TTCCATTGCTGATCAGCAAC EST sequence (targeted fragment marked with yellow): CCTTTACAGCTACCCCTCTTTTCTTCCTTCAAGAAAAATGGCTGAAGAAAGTCCCAAGTCCATCTATGACTTCACTGTCAAGGATATCCATGGAAACGATACGAGTTTAAGTGAATACAGTGGGAAGGTGCTCCTTATCGTGAATGTTGCTTCCAAATGTGGCCTCACACATTCAAACTACAAGGAATTGAATGTTTTGTATGAAAAGTACAAAAACCAAGGGTTTGAGATCTTGGCATTTCCTTGCAACCAGTTTGCTGGACAAGAACCAGGAAGCAATGAAGAGATTCAGGACACTGTATGCACAATTTTCAAAGCTGAATTCCCAATTTTCGATAAGATTGATGTGAATGGGAAGAACACAGCCCCTGTTTACAAGTTTTTAAAATCAGAGAAAGGAGGGTATTTTGGAGATGCCAAAAAAAGGAACTTTACCAAATTTTTGGTAAACAAAGAAGGAAAGGTTGTTGAGAGATATGCTCCTACTACATCCCCTTTTAAGATTGAGAAAGACATTCAGAATTTGCTGGGATTTTCCTAAGGACCAAGGAAATTGGCATATACTGGGAATATTGTTGAAGTACATGAAATGTGGAATGTTATGTGCTTGTGGACTTGATTTATGAATTTGTATTATTGATCAGCATTGGAAGTATTTATTTTCATAATGGATAAGATGGCCCTTGTACTTGGATGATTCCCTGGAAAAAATAATTAAGGTTTTAGTTTTTTCAAAAAAAAAAAAAAAAAACTTTAAAGGAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|3857974|gb|AI166690.1|AI166690 xylem.est.498 Poplar xylem Lambda ZAPII library Populus trichocarpa cDNA 5', mRNA sequence TTCCATTGCTGATCAGCAAC EST sequence (targeted fragment marked with yellow): AGGAAGAGGAGGAGAAGTCTGGACCGGTCAGCTTGGGTCCTAAGAGTTTCGGATCAGCAGTGGAGATGTTTGATTATTTCTACAATTTCCTCCATCAGTGGCCTCCCAATATTAAAGTCAACAAGTATGAGCACATGGTGCTGGTGGACTTGCTTAAGACTGGTCACTCAGAGCCTGACAAAAAGATTGGTAGTGGCATCCAAGCTTTCCAAGTTCGGTTTCATCCAAGGTTTAAGAGTCGGTGCTTATTCCTAATTAGGGATGATGACTCTGTTGATGATTTCAGCTTTAGGAAGTGTGTGGATCACATACTTCCGCTGCCCGAGGACTTGAAAGTAAAATCTGACAACTTTCTAGGTGGAGGTAAGGGTCACGGAGGGAAAGGTGGTCCTGGTGGAAGAGGTGGCCGAGGCCGTGGCCGTGGTTATGGAAGAGGTGGTAGATCAAGGAACTGATGAATCATANAAGACAATTGAGGATCACATGTTTCTCTTCTTATTGTCTAGCTAAGCTATTCTCTCCGATCCAAGTTTTGACTGTTAAATTCTTATAGTTTAATGCCTTTTCATGTGGCCTTAGAGATCGTCTGTTTTTGCCGCTTCAATTTATTACTTGTCCGAGCTGTCCTTTAAAAAA | |||||||||
gi|73879137|gb|DT481875.1|DT481875 WS02533.BR_D12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02533_D12 5', mRNA sequence TTCCATTGCTGATCAGCAAC EST sequence (targeted fragment marked with yellow): GTCGAGTTTTTTTTTTTTTTTTTTGCTGAGTATTTTCTTCGATACAAACTGATTGTTATTCGTTTAATAGCCAAGATATTCCGCCATTAAACTGATGACGGATTCGAAACGGCAATTATAAGAAAAATAATTCGTGTTTTATGCTGAGAGGCATGATTAATTGTATCGAAAGTGAAATATAATTCGAGAATAATTTGATTCGATTCCTGAACTGCTTTCATCACGTTGTCTTTGCGAATAGTTAAGTTTAATTCGCGTTAAATCGATTGCGGTCATCGTTCTTTAAGGAGAAATTAATACAATTTTGTGATAAAAATGACTGTGGAAGTTGCACACCATGATAGCATTGTTGACAGCAATGGAAAAATCCCAACAACATTGACTGAAGCACCAACAACGCCATTAACACCCGCTAAAGAAAATATTTTCGTTTCAATCATACAAACTATTTATGATGTAATCGTATTCTTAGGCATTTCCATTGGATACATTCTTCAAGATCTATTCTACAAAGTGTTCGGCTTTCCCGAACAGGTAATCAAAGGTGAATTAGCTCTAGTTACTGGAGGCGGTGGTGGACTTGGCCGTTTATTAGCATTGCGTTTATCCAAATTGGGAGTTGACATAGTCATTTGGGACATCAATCAAGAAGGTATCGATGAAACAATTGAATTAATTCGGGCCAACGGCGGAACATGTGTTGGTTACAAGGTCGACATTTCGAAAAAAGAAGAAGTTTACATAGCAGCTGATGCCATTCGACGAGATGTTGGTGATATTACAATGCTCATAAACAAT | |||||||||
gi|52495382|gb|CV242407.1|CV242407 WS02514.B21.1_P16 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02514_P16 3', mRNA sequence TTCCATTGCTGATCAGCAAC EST sequence (targeted fragment marked with yellow): AATTTTAAATCATTACTTTGCTTTAACTACTCATGCTATGGATGTGGGAGCATTAACTCCGTTCCTGTGGGCTTTTGAGGAGCGGGAGAAATTGTTGGAATTCTATGAAAGAGTATCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTCGAGATATTGATTCCTTCACACAACAATTTTCTTCTCGTATCGACGAATTAGAAGAGATGTTAACCGGCAACCGTATCTGGAAACAACGATTAGTGGATATTGGTACTGTCACTGCACAGCAAGCAAAGGATTGGGGATTCAGTGGTGTAATGTTAAGAGGTTCAGGGGTATGCTGGGATTTGCGAAAAGCAGCACCTTACGATGTTTATGACCAATTGGATTTTGACGTACCAGTAGGTACCAGAGGAGATTGCTATGATCGTTACTGTATCCGTATTGAAGAGATGCGACAAAGTCTTCGGATCATTGTGCAATGTCTTAATCAAATGCCTAGTGGCATGATCAAAGCCGATGATCGTAAGCTATGTCCTCCATCACGATGTCGAATGAAACTATCCATGGAATCCTTAATTCACCATTTCGAACTTTATACAGAAGGTTTTTCTGTACCAGCTTCTTCTACCTATACCGCAGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCTTACCGTTGTAAAATAAGAGCACCTGGCTTTGCCCATTTACAAGGACTCGATTTTATGTCCAAACATCACATGCTAGCGGATGTGGTCACCATCATAGGTACTCAAGATATTGTCTTTGGAGAGGTGGATAGATAGGCTTTCTATGAAAGCTCGATTAGGACCCTAGCTTTATTGCAAGCCAAAAAAAAAAAAAAAAAA | |||||||||