| mature miRNA: TTCCCTAGTCCCCCTATTCCTA species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|56535490|gb|CX051199.1|CX051199 UCRCS09_37C12_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone U TTCCCTAGTCCCCCTATTCCTA EST sequence (targeted fragment marked with yellow): TTTTTTTTTGTCACAAAATAAAAAGCATATTAGCCATTGCATAAAGAAAGTAAATAAATAAATAATACACAGAACAACAAATATACGTAGAGTGTTAAAACACAGTTAACGAGAACGAATGGGAAAGAAGCAGGAAATAAAAAGTGAAGGGAAAGAGATTAGAAGCTGAAAATCATAGGAATAGGGGGACTAGGGAAAATTAATTTAGTTATGACAGACAAGTCAAACAAAACCTTCCCTAGCACCCAATTCCAAAAATTTTACAGCATCCTCTCTCTTTCCCTTTCTCTCAATTGATTTGAAAACGGAGATGTACCCTC | |||||||||
gi|188391196|gb|EY681302.1|EY681302 CS00-C1-650-020-E06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN TTCCCTAGTCCCCCTATTCCTA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTTAAGCGTAGGAGGAGAAGAAGAAGGAAGATATTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGACTATGGACATCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTGAAGTAGAGGGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGAACCTCGACTTCCATCTCATGACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGATCGATGCCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAACTGCCCTCAGCCATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATCGCTACAAGATGAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATCGGTAACAATAACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAAGGTTCGAAAAGTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATAAGGTTAAGGATGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCTCGCTCTGCTGCTCTAATCAATCAGAAATGCCATGTGAAGAACAAGGACATTAGGAAATTTCTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTGGAGAAAAATGATGATTAGCTTTCGAATTTTCTTGTTATAATAATGGTATGAATTTTTTTTTAAATCTTTTTAAATTTTGCCTCCTTACTTTGAAGTTGAGGACTTGCTTTTTGGGTTTGGATTTGGGAATTTGGGGACTGGGGAATTCATAAATTTTCATTTTAGGTCCTCCATTGGCATTCCTCCCCAAATTATGGTAGGGATTTTTAAACTCAAAAAAAAAAAAAAAAAGGGGCGGGCCCCCCCCCAAAAGGAGACCCAAACTTAACAAACCCCCGGGGCCGTGGCAACCCCCCACAACCCCTTTTTTAAATGGGGCCCCCCCAAAAATTTCAATT | |||||||||
gi|188447125|gb|EY743813.1|EY743813 CS00-C3-705-108-C11-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD TTCCCTAGTCCCCCTATTCCTA EST sequence (targeted fragment marked with yellow): CCCACGCGTCCGGTAGTTGCAAAGTTTTGTGCCAAGTTTCTTCACCAGCAAGTTCTCAAGAATAAAGCTTATGCAGCTGGAGATGTAGGAACTTCCGTTCAGAAAGCTTTTTTCAGGATGGATGAGATGATGAAGGGACAAAGAGGATGGAGAGAATTAGCTGTTTTGGGAGATAAAATAAATAAGTTCACTGGCATGATAGAAGGGTTGATATGGTCTCCAAGGGGTGGTGATAGTAATGATCAACCTAATGATTGGGCTTTTGAGGAGGGCCCTCACTCTGATTTTGCTGGACCAACTTCTGGAAGCACAGCCTGTGTTGCAATTATCAGAAACAATCATCTCATTGTTGCAAATGCTGGTGATTCTCGATGCGTGATATCTAGAAAGGGCCAGGCATATAATTCTCTCAAGAGATCACGAACCGGATCTTGGAACTGAAAAAAGAAAGGGATATTGAAAGCTGGGTGGATTTATAGCTGAAGGACGAAGTCAATGGGTAGTTGGAAATCTTGGCGAGAGCCAATTAGGGTATCTGGGCCTGGGGGGGATTAAAACTTCCGTGGGCCCAAAATCTTTTTAATCGCTTGAGACGACAAATTATGAGGACAAATTAATAGGATGGTTAGAAATACCATTCTCCCATATAAGGCCAACAAGATTTTTACCTGGGAAAAAATATTTAAGGGAACCGAGGCTGGATGAGTGGAGGGGAAGCTCGTTGCGAGTAGCGCGAGTGGCGAAGAAGGGTTGGGGGAAATTTGTAGAAATTCTCCTCGTACTGGAAGCATCGCGGTTTCGTAACAACGCAGCGGTAGATAAGGAGTAAGGGGATTAGGGAACAATTAGAATAATAAGACGCGTGGATTGCAAGAGAAGAGGAGTAGAGAGAACTATGAGAATGAGTGGAATTTTCTATATTATATGATTGTATGTATAAATTTGACGACGTATGTTACTTTAGTAGTGATGCTACTTATATTATCTACTCTATCTTCACATAGCTGGGATAATACGAG | |||||||||
gi|188368060|gb|EY666576.1|EY666576 CS00-C1-102-016-E01-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) TTCCCTAGTCCCCCTATTCCTA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGCCACTTGCCACAAACTTCATCCTTTCCAAAATTCATCATCAAAGCCGTTGATGATGGCAGCATAATTGTCTCTGCTCCAAATTCAAAAACGTTAGGGGAGGCACTGAACTTCTTCTCAAAGTACAACAAGTTTGCATATGGGAGAGATGGAGACAGAAATAAAATTATTAATCGCTTATCGGCGTTGAATGATGTTGATACTGCTATAGTGGGAATAGGTGGACTAGGGAAAATTGTGGTTTGGAAAAATATTTATTGGTTTTAGATGATGTGTGGAATGAAACATGGTGAATTCAACCAATTAGAAATCTTATTCATCCACACATTTGTTACGAATCCCGCAGCATAGCGGTTGTCATAGAGAATGATATTATAGTCACAATTGAATAGATGCTTTGCTTACTGTGCAATGTTTCTCAACAATTATGAGATTGGGTAGAAATAATGGGTGTTCCTTTAAACAATACGGTTATCAATCAAAAATCAATTTACTTTCTAGGTTTTTTTTTCAAGGTGCAGAAAATGATATCCATGGGTAAAGAAGTCATTGCATAAATTTATGAAGGAATGCATGATCTTTGCCCGAGGTAACTTGCGGGGAAATGGAATGTTCCCAAAAATAAAAATTGGAATTAATGGTAAATAAAGCAATTTGGCATTTTGCGTAAAATCTGAAAAAAATTCAAGGGAAGTGGAAAAAGAAAAAAGGGCCCACCTTTCCAGTAGGGTAAGATGGAAGACCATTTAAATGGGAAAATAAAAAAAAATCCGCTAATTTGCCGAAACAAAGGTGATTAATAATTGTTCAAGGAACCAAGGAGACCTGCGCGAAATTACATCAAAACACTTGCACAAAAAGTCCAAAAAAAAGAACGAAACAAAAAGTAGGTGATACCAAAGAGAGCCAGAACAGCGCCAGGA | |||||||||
gi|188335531|gb|EY730541.1|EY730541 CS00-C3-704-031-C12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cD TTCCCTAGTCCCCCTATTCCTA EST sequence (targeted fragment marked with yellow): CCACGCGTCCGACCCTAGCTGCGGAAGAAAATATTGCTGCGAGTAGCAACCAGTCAAGCCACTTGCCACAAACTTCATCCTTTCCAAAATTCATCATCAAAGCCGTTGATGATGGCAGCATAATTGTCTCTGCTCCAAATTCAAAAACGTTAGGGGAGGCACTGAACTTCTTCTCAAAGTACAACAAGTTTGCATATGGGAGAGATGGAGACAGAAATAAAATTATTAATCGCTTATCGGCGTTGAATGATGTTGATACTGTTATAGTGGGAATAGGTGGACTAGGGAAAATTGTGGTTTGGAAAAATATTTATTGGTTTTAGATGATGTGTGGAATGAAACATGGTGAATTCAACCAATTAGAAATCTTATTCATCCACACATTTGTTACGAATCCCGCAGCATAGCGGTTGTCATAGAGAATGATATTATAGTCACAATTGAATAGATGCTTTGCTTACTGTGCAATGTTTCTCAACAATTATGAGATTGGGTAGAAATAATGGGTGTTCCTTTAAACAATACGGTTATCAATCAAAAATCAATTTACTTTCTAGGTTTTTTTTTCAAGGTGCAGAATATGATATCCATGGTAAAGAGTCAATTGCATAGATTTATGATGGATGCATGATCTTGCCGAGTTACTTGCGGGAATTGAGTGTTCCAAGATAAAATTGAATTATGTTATTAAGCACTTGCATCTGCTGAATCTGAGTAGTTCANGGATTGAGATAAATAGGGCCAACTTCCTAGGTAAGTTGAAGCATTTAATGGAATTAAAAAATCCCCTATTCAGCATCCAGGCTATTAGAATTTAGAACCACAGAATGCTGTGATATTACTGACTTGG | |||||||||