| mature miRNA: TTCCGTCGGTAAATTCGTTGG species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73870511|gb|DT473249.1|DT473249 WS01229.BR_B01 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_B01 5', mRNA sequence TTCCGTCGGTAAATTCGTTGG EST sequence (targeted fragment marked with yellow): GGTCTCTTTAAAACACACTCCGTTACTATCTCCACACTCTCCTTCTCTCTCTCTAAGAATAGGGATCGAGTGCGAAAGTCTCCGTTTCGGGTGGATTTTGAAGCCTCTCTTTTTAGGTTGCCGATGAGCTAATGACACCGATATTAAAATTTGCTGTTTTGCTGATTCTTAGATGAAACTCTGCGAATTGTTGTTGGGGGAATTGGTGGGGATTTGAAATCATGAAGATGTTTATGAGCTGCTTGTTTGGTTTTGTTGATTGAGGGTGCGAAGGTCTGTAAATATATAGATATATATATATATATATATATATCTATATTTTTTGTTTTTGGTTTTTATTCGCGTGTCCAATAAAGATGTTAGTCATCAGCCTTTAGTAGTTGTGGTGCCGGGATTGCAAATCACAAGCCCAGAAGCAAGAAAAACAGTGATGGGGGAAGCTCTTCTAACGACTTTATCGATGGAAAATTACCACCCATCTACACTTCTTTCGATGGATTCAGGTTCTCTTGCACATGATGAGTTGGAGAGGGAGATGAACCGGTCAATCATTCTTTCACGGCCTCCTGATATCAATCTCCCATTGTCATCTGAGCCTAGTCCACCTCCTCCCCTTACTTGGAACGATCCGTGTGACATCCTGGATGTAGGTCTTGGGCCTCAGATCTATGAGACTGAGACAATTGTCACTATTCCAAAAATTGCGAAGAAATGTGCAAAACGCCTGGATAGCATTTGGGGTGCCTGGTTCTTCTTTAGCTTCTATTTCAAGCCTGTTTTGAATGAGAAGTCGAAATCCAAAATAAATAGGGATAGTAAGGGTGTTTCTGGGTTTGAGAAACCTGATTTGCAGCTTGATGCTTTTTTGGTTCAGCATGACATGGAGAACATGTACATGTGGGTGTTCAAGGAA | |||||||||
gi|60711165|gb|DN500975.1|DN500975 UM43TG10.5pR Populus female catkins cDNA library Populus trichocarpa cDNA clone UM43TG10 5', TTCCGTCGGTAAATTCGTTGG EST sequence (targeted fragment marked with yellow): GGCCGGGGATGATAAGAGTAGAAAGAATGTGGTTTTTGAGCAGAAAAGGAACATCTGGGTTCTCAGCTTCTTCCACAGCTGAAGATGTTACACAAGGGATTGATGGCTCTGGTCTCACTGCCATTGTCACAGGAGCATCAAGTGGGATTGGAGCAGAAACAGCACGGGTGCTTGCATTACGGGGTGTTCATGTAGTTATGGGAGTGAGGAATCTGGAAGCTGGCAGGGCGGTCAAAGAAGCAATTGTTAAGGGAAACCCTAATGCAAAACTTGATGCCATGGATTTGGATTTAAGTTCCATGGCATCAGTAAAGAAATTTGCAGAAGACTTCAAGTCCTTGAATCTTCCCTTAAACCTTCTCATTAACAATGCAGGAATCATGGCAACACCATTCATGCTTTCCAAGGACAACATAGAACTTCAATTCGCAACAAACCATGTCGGTCATTTTCTGTTGACGAATTTACTGATGGAAACCATTAGAAAGACAGCTCGTGCAAGCAGGAAAGAAGGAAGGATTGTGAATGTCTCATCACGCCGGCACAAATTCTCATACCCAGAAGGGATTCGTTTTGCTAAACTCAATGATCCATCCGGGTATAACAGTTTATCTGCATATGGTCAGTCGAAGCTTGCAAATATTTTGCATGCTAATGAGCTTGCAAGACAACTAAAGGAAGACAGGGTGGAGGTAACTGCAAATTCAGTTCATCCAGGATTGATAGCCACCAATCTTTTT | |||||||||