| mature miRNA: TTCCTAATGCCTCCCATTCCTA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88988710|gb|CI039129.1|CI039129 CI039129 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TTCCTAATGCCTCCCATTCCTA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTAGAGCAATTCAAGAACTTCTAATCATTCCGCACCCAACAAATTGGTGCGCTCTATTTAACCTTTTCTTCTGCAAGGGACACAATAGAACACTATATATACTCCTTGTGTATAGATATTAACACCACACCAGCCGTGCAAAAGGATGCTAAATCCTGACATATTGGATGCTTTACGGTTAGGATTTGTTGGTTTTCAAAGTGTACAAGCAAAGAAAGCTCAAACTGCCACGAATGCGACGTCTCTACTCAAAGTCCGGGAATTGCTTCCAGGTTGTACTTCTCTGATGATGTCAGGCCATTCTCTGGGCCCTGCTGTGTTCTTGGTTGCTCCAGCACGTTCAGCTTCTGAAGGTAGGAGTAGGAGGCATTGGGATTTGGCGGTGGGCTCGGGTTGCTTATTTTGCTTGCCAGGAACCGTCTGATGAGTCCTCTGAGGAATGGAGCCATGGTATCTGGCTCATACTCCAGGAAATACATGATTCCCCCCATGCACATGCAGAAAAGAG | |||||||||
gi|88404747|gb|CI583554.1|CI583554 CI583554 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TTCCTAATGCCTCCCATTCCTA EST sequence (targeted fragment marked with yellow): GATTCGGGGAAGAGAGAAGGGAAGGGCCTCTTCGTCGGCGGCGACCGCGAGCTTCCGCTTCCGACATAGCATCGCCGCTCGCCGGATCGGAGAGCGAGGGGAGCACGCCGTGCGCGAGGAGGGCAGCGGGGGCGCGCGGGGGATACGGTTGGAGGCGCTTCAGCTACGGCCGGCCGAGGACCTGCGGCGAGTTGGTTCCTCTTCAGCTATGCATCAAGTAATTAGAATGCAAGAAGAACATGGAAATGAAGGAATCTTGAATATCATCATTTCGCCTCTGCAAAGTTTCAGAGATATTAATGATTAAATTGGTGTTAGCTGAAAGTAAGAGGAACGAGCACCTAAGAACTATAGGAATGGGAGGCATCAGGAAAATCATCAGACCAAATCTCCAATACCAGAGCTAC | |||||||||
gi|88514635|gb|CI442141.1|CI442141 CI442141 Oryza sativa (japonica cultivar-group) callus UVB iradiated callus, immid after trea TTCCTAATGCCTCCCATTCCTA EST sequence (targeted fragment marked with yellow): ACCAAAAGGATGCTAAATCCTGACATATTGGATGCTTTACGGTCAGGATTTGTTGGTTTTCAAAGTGTACAAGCAAAGAAAGCTCAAANTGCCACGAATGCGACGTCTCTACTCAAAGTCCGGGAATTGCTTCCAGGTTGTACTTCTCTGATGATGTCAGGCCATCCTCTGGGCCCTGCTGTGTTCTTGGTTGCTCCACCACGTCCAGCTTCTGAAGGTAGGAGTAGGAGGCATTGGGATTTGGCGGTGGGCTCGGGTTGCTTATTTTGCTTGCCACGAACCGTCTGATGAGTCCTCTGAGGAATGGACCCATGGTATCTGGCTCATACTCCAGGAACTACATGATCCCCCCCCATGCACATGCACAAAAGAGCCACCTCACCGTCTGCAATATTTGGGAGCAGATGGGGGTTGATTAATATAT | |||||||||
gi|88485068|gb|CI422339.1|CI422339 CI422339 Oryza sativa (japonica cultivar-group) callus 100ppm ZnSO4 for 1week Oryza sativa Ja TTCCTAATGCCTCCCATTCCTA EST sequence (targeted fragment marked with yellow): GTTAAATCCTGACATATTGGATGCTTTACGGTTAGGATTTGTTGGTTTTCAAAGTGTACAAGCAAAGAAAGCTCAAACTGCCACGAATGCGACGTCTCTACTCAAAGTCCGGGAATTGCTTCCAGGTTGTACTTCTCTGATGATGTCAGGCCATTCTCTGGGCCCTGCTGTGTTCTTGGTTGCTCCACCACGTTCAGCTTCTGAAGGTAGGAGTAGGAGGCATTGGGATTTGGCGGTGGGCTCGGGTTGCTTATTTTGCTTGCCAGGAACCGTCTGATGAGTCCTCTGAGGAATGGAGCCATGGTATCTGGCTCATACTCCAGGAAATACATGATTCCCCCCATGCACATGCAGAAAAGAGCCACCTCAGCGTTTTTAATATTTGGGAGCAGATGGCGGTTGAT | |||||||||
gi|29671287|gb|CB667562.1|CB667562 OSJNEd14P05.f OSJNEd Oryza sativa Japonica Group cDNA clone OSJNEd14P05 5', mRNA sequence TTCCTAATGCCTCCCATTCCTA EST sequence (targeted fragment marked with yellow): GGAACACCTTCTGGGGTGTCTGTTCTGAATGAGATGGAAGCACAAGATTATAATCTGCTTCATGACTTTACTGGATATGTGACCAACAAGAAATACTTGGTTGTGCTTAATGGCCTGTCTACAATAGAAGAGTGGGACTGGATAAAAACTTATCTTCCAAACAATCATAACGGGAGCCGAGTCCTAGTGTGCACACAGCAAGCTGAAGTTGCAAGCTGTTGTACTTGTACCGATGATAAGTACAAGGTGTCTGAGATTCAACACGAAGGGTCATTTTCCAAACCTCTTTATGTCTTCTACAAGGAGGTGGTCTCTCAGCCAGTTAATTCAGATTCCACTAAGATGAAATCAGAGACCAGGTCCAGCATGGAGGGTGCCTCTACTACTAGTGACAGCAAAACAGTACCTTCTGATGGCGTGATACAGGAGGATGGCCCGAAGGACCTGCCTGAAAGCAGTTTACCCCCTCACCTCAACAGAGATTCCAACACTGTGTCTGTGAAGGAACTTTCTCGCAGCACGACACAGCTCATTGGTAGAGGAAAAGAAAAGGATGACGTCATCAAACTGCTTTCTGATTGTAATCCGATCCGTCAAGTGATTTCGGTGTGGGGAATGGGTGGCATTGGGAAAACCACTCTCGTCAAAAGCATCTATCAGAGCTCCGAGCTTGAGAAGCTTGGGTTTGAGAGGCGTGCTTGGGTAACTGTATTGCGTCCTTTCCAGCTTACTGAGCTCC | |||||||||