| mature miRNA: TTCTCACCATTGCAGGAGGGT species: Hordeum vulgare database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|16332603|gb|BG416339.2|BG416339 HVSMEk0011I02f Hordeum vulgare testa/pericarp EST library HVcDNA0013 (normal) Hordeum vulgare TTCTCACCATTGCAGGAGGGT EST sequence (targeted fragment marked with yellow): CGCCCTCGCGCTCATCACGGGGAACGAAGCCCACTACTCGATCCTGAAGCAGGTGCAGCTGGTCCACCTGGACGACCTCTGCGACGCCATGACTTTCCTCTTCGAGCACCCGGAGGCCAACGGCCGCTACATCTGCTCCTCCCACGACGCCACCATCCACGGCCTCGCCAGGATGCTCCAGGACAGGTTCCCGGAGTACGACATCCCGCAGAAGTTCGCGGGGGTCGACGACAACCTTCAGCCCATCCACTTCTCCTCCAAGAAGCTCCTAGACCACGGCTTCAGCTTCCGGTACACCACCGAGGACATGTTCGACGCCGCCATCCACACCTGCAGGGACAAGGGCCTCATTCCGCTGGGAGACGTCCCGGCACCTGCAGCCGGCGGCAAGCTGGGAGCTCTTGCTGCGGGGGAAGGCCAAGCCATTGGTGCAGAGACGTAATAAGCTAGAGCTGCTGCATGAATATTCCTATTCTTGTGTGTTCGGAATTTGCATGGGCAGTGCCCTGGTATCGGTGGGATATCATGGACAATATAAAATAAATATATTAAGTATATTTAATTGAATATATAATTATATATAATAATTTCTTGGGGGTGGCCCCGGAGGGGGCCCGGCCCCCCAATAGGCCCTTTTTAGAGTTGTTTTGCAATTCTTTGCGCGCCGGTTTTAACAAGGAAAACCCGGGAGAAAACCCTGGTTTTCTCCACTTATAACGACTTTGCCGTTATAACCGCTCTTTTGTAATGGTGGGAAAAAACAAAAAAAGGCCCCTCTCATACCCTTTTCCACATATTGTGGGCGCCTTGGTGGAAATAGGCGCAATTATTCGCGTTAAATTTTGGGTAAAAATTCCGGAAAATATGGTTAATAAATAACCATTTTTGACCACATTGGGCCAAAATCGGTAATATCTCTTATAATTCACAAATATATGTCCCCTATGGGGGTATGTTTTGTTCCACTTGTGCAATATAGAAACACTTTAAAAAAGCGGTACCGCGGCAAAAGGCGATAAAAGCGGTTTGGGCGGGAGGGGCACATACAAAAATAATCTTT | |||||||||
gi|21162764|gb|BJ484316.1|BJ484316 BJ484316 K. Sato unpublished cDNA library, strain H602 adult, heading stage top three leaves TTCTCACCATTGCAGGAGGGT EST sequence (targeted fragment marked with yellow): CTTCTTGTTCTTCCTCTTAAATTCCTGAACNNAAGTGGTTGACCATCCGGTTGTCGAAGTCCTCACCTCCCAGGTGGGTATCTCCGGCAGTGGCCTTTACCTCGAAGATACCCTCCTCAATGGTGAGGAGCGAGACATCGAAGGTACCGCCGCCGAGATCAAAGATGAGCACGTTCTTCTCGCNGACGCTGGTCGACTTCTTGTCNAGACCGTAGGCGATGGCGACGGCGGTAGGCTCGTTGATGATCCGCATGACGTTGAGGCCGGAGATGACGCCTGCATCCTTGGTGGCCTGGCGCTGGGAGTCGTTGAAGTAGGCGGGGACGGTGACGACTGCGTTCTTGATGGTTGTGCCGAGGTAGGCCTCGGCCGTCTCCTTCATCTTGTTGAGCACCATGNAGGAGATCTCCTCGGCCGAGAACTGCTTGTCCTCGCCTCTGTACTGTACCCCGATC | |||||||||
gi|16295168|gb|BI951867.1|BI951867 HVSMEm0003G12f Hordeum vulgare green seedling EST library HVcDNA0014 (Blumeria infected) Hord TTCTCACCATTGCAGGAGGGT EST sequence (targeted fragment marked with yellow): GCACGAGGTGATTTCTCTCTCTTCAATGGGGTGGGTGACAGAGTTGATTGCCGCCCTCTCTCTTCCTACTACTTCACGCTTTAGAACTTCATTCTCACGGCCGGCGGTTTCTTCGTATAGCCGCCGAGGTTTGCCGGAATTTAAAGGGTTGAAAATCCAATCCTATTCACTGATTTCGTTCGCGTGCACGAGTTGCAGATATCCTAGGGTTTCCAAGCATAGTGGACGCGTTGTTTGCGAAGCTCAGGAAACTGCTATTGATATTCCAGCTGTGAACGATGAAACATGGCAATCACTTGTGCTCAACGCTGATGGACCTGTACTAGTTGAGTTCTGGGCTCCTTGGTGCGGACCATGCCGCATGATCGATCCCGTAATAGGTGAACTAGCACAGCAATACGCAGGAAAACTCAAGTGCTTCAAACTGAATACAGATGATAGCCCCTCGATCGCTTCCCAATATGGAACCCGAAGCATCCCGACACTCATGATCTTCTTGAATGGTGAGAAAAAAGATGCAGTTATTGGTGCTGGGCCAAAAACTACTCTATCAGCAAGGCATAGAGAGATTCTTGGTGATAGCCATTCATAAGAGGGGATATTGGACTGTGGAATTCTGGAAGGGGTCCAGAATTATTACCCACCTGGGCTAGGGTAATATGCTTTATTTCTTCCGTGGGAGGGTGGAAAATTCCCTAATTTTACGTCAAAATTGGGAACCCGTGCCTTGGCTAGTACCACATGCTTTGTGCAGTGTATTTGAAAATATCTATGTTTGGCCAAATTTTTCTTTTATTTTCGGGTGGCAAGACAAAAAAAAAACAAAAGTTGTGAAGAGTTTTTTGAGGCGAGGTGGGGGCCCATGAATTATCACCCCGCGGGGGGGGGCCTCTCAAGTACCGGTCATTCTCCCCAN | |||||||||